MD15G1304800.v1.1

Malate dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
29689886 .. 29693511
3626 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1304800.v1.1.491

Sequence Viewer

Length: 1083 bp
ATGCAGCAGCATCCTAGCTCAGAAGTAAACGCGAATCAACGGATTGCTAGAATCTCCGCCCATCTGGACCCTCCAAATCTCCAGATGGAGAACGCTGCCACTGTTAACCGCTTGAATTGCCGCGCCAAAGGTGGTACCGCTGGTTACAAAGTAGCCATACTCGGAGCAGCCGGCGGCATAGGCCAGCCTCTCGCCATGTTGATGAAGATGAACCCTTTGGTCTCCGTTCTCCACCTATACGACGTCGTCAACACCCCCGGCGTTACCTCCGATATCAGCCACATGGACACCGGCGCCGTCGTGCGCGGGTTTTTGGGGCAGCAGCAGCTGGACGAAGCGCTGACCGGAATGGAACTGGTGATCATCCCGGCCGGCGTGCCTCGAAAACCCGGAATGACAAGGGACGATTTGTTTAACATCAATGCCGGAATTGTCAAGACGATCAGTGAAGCAATCGCCAGGTGCTGTCCGTACGCCATTGTTAACGTGATTAGCAACCCTGTGAACTCCACTGTTCCCATTGCTGCTGAAGTTTTAAAAAAAGCCGGTACCTTTGACCCTAAGAAACTGTTGGGAGTTACCATGCTTGATGTTGTTAGAGCCAATACTTTTGTGGCAGAGGTTTTGGGACTTGATCCTAGGGATGTCGGTGTTCCCGTTGTTGGGGGTCATGCAGGGGTTACAATTTTGCCTCTTCTGTCTCAGGTTAAGCCTCCATGTTCTTTCACCCCGAAAGAAGTTGATGATCTAACATATCGCATTCAGAATGGTGGGACTGAGGTTGTGGAGGCAAAAGCTGGAGCTGGTTCTGCAACATTATCAATGGCATATGCTGCTGTTAAATTTGCAGATGCATGCCTCCGAGGCTTGCGAGGAGATGCTGGCGTAGTCGAATGTGCATTTGTGGCTTCTCAGGTTACTGAACTTCCCTTCTTTGCATCCAAGGTACGGCTTGGCCGTACTGGAGCTGAGGAAATATACCCTCTTGGTCCCCTGAATGAGTATGAGAGGGCCGGCTTGGAGAAGGCAAAGAGAGAACTAGCAACAAGCATTCAGAAGGGGGTTTCTTTCGTCAGAAAATGA

Protein Analysis

361

Amino Acids

38.01

Weight (kDa)

8.46

Isoelectric Point (pI)

25.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ldh_1_N PF00056 50 - 192 1.5e-45 lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C PF02866 194 - 357 2.9e-43 lactate/malate dehydrogenase, alpha/beta C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014980)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 246
Acc65I GGTACC 2 cut(s) 134, 548
AccB1I GGYRCC 3 cut(s) 134, 293, 548
AccII CGCG 3 cut(s) 32, 123, 306
AciI CCGC 6 cut(s) 57, 109, 121, 138, 174, 306
AclWI GGATC 1 cut(s) 629
AcoI YGGCCR 2 cut(s) 369, 955
AcsI RAATTY 1 cut(s) 842
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 2 cut(s) 243, 294
AfaI GTAC 5 cut(s) 136, 473, 550, 948, 961
AfeI AGCGCT 1 cut(s) 339
AfiI CCNNNNNNNGG 3 cut(s) 662, 663, 948
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 1 cut(s) 458
AluBI AGCT 5 cut(s) 18, 328, 797, 803, 968
AluI AGCT 5 cut(s) 18, 328, 797, 803, 968
Alw26I GTCTC 2 cut(s) 226, 705
AlwI GGATC 1 cut(s) 629
AlwNI CAGNNNCTG 2 cut(s) 328, 465
Aor51HI AGCGCT 1 cut(s) 339
AoxI GGCC 4 cut(s) 181, 369, 955, 1011
ApeKI GCWGC 9 cut(s) 4, 7, 95, 167, 319, 322, 325, 524, 833
ApoI RAATTY 1 cut(s) 842
Asp718I GGTACC 2 cut(s) 134, 548
AspA2I CCTAGG 1 cut(s) 638
AspLEI GCGC 4 cut(s) 125, 296, 306, 340
AspS9I GGNCC 3 cut(s) 67, 989, 1011
AsuC2I CCSGG 3 cut(s) 258, 368, 390
AsuHPI GGTGA 2 cut(s) 370, 718
AvaII GGWCC 2 cut(s) 67, 989
AvrII CCTAGG 1 cut(s) 638
BanI GGYRCC 3 cut(s) 134, 293, 548
BbvCI CCTCAGC 1 cut(s) 969
BbvI GCAGC 9 cut(s) 16, 19, 82, 179, 331, 334, 337, 511, 820
BccI CCATC 2 cut(s) 69, 79
BceAI ACGGC 3 cut(s) 281, 942, 965
BciT130I CCWGG 1 cut(s) 460
BclI TGATCA 1 cut(s) 360
BcnI CCSGG 3 cut(s) 258, 368, 390
BcoDI GTCTC 2 cut(s) 226, 705
BfaI CTAG 4 cut(s) 15, 48, 639, 1040
BfoI RGCGCY 2 cut(s) 297, 341
BglI GCCNNNNNGGC 1 cut(s) 864
BlnI CCTAGG 1 cut(s) 638
Bme1390I CCNGG 4 cut(s) 258, 368, 390, 460
Bme18I GGWCC 2 cut(s) 67, 989
BmgT120I GGNCC 3 cut(s) 67, 989, 1011
BmiI GGNNCC 5 cut(s) 69, 136, 295, 550, 991
BmrFI CCNGG 4 cut(s) 258, 368, 390, 460
BmsI GCATC 4 cut(s) 19, 841, 868, 947
BpmI CTGGAG 3 cut(s) 65, 819, 984
Bpu10I CCTNAGC 1 cut(s) 969
BpuMI CCSGG 3 cut(s) 258, 368, 390
BsaHI GRCGYC 2 cut(s) 243, 294
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 4 cut(s) 256, 638, 862, 942
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 3 cut(s) 662, 663, 948
Bse118I RCCGGY 5 cut(s) 170, 290, 371, 545, 1013
Bse1I ACTGG 2 cut(s) 360, 967
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 4 cut(s) 256, 638, 862, 942
BseGI GGATG 4 cut(s) 10, 363, 649, 938
BseLI CCNNNNNNNGG 3 cut(s) 662, 663, 948
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 5 cut(s) 33, 716, 768, 926, 960
BseNI ACTGG 2 cut(s) 360, 967
BseRI GAGGAG 1 cut(s) 888
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 9 cut(s) 16, 19, 82, 179, 331, 334, 337, 511, 820
Bsh1236I CGCG 3 cut(s) 32, 123, 306
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 4 cut(s) 183, 371, 957, 1013
BshNI GGYRCC 3 cut(s) 134, 293, 548
BsiEI CGRYCG 1 cut(s) 372
BsiWI CGTACG 1 cut(s) 471
BslFI GGGAC 4 cut(s) 416, 642, 787, 975
BslI CCNNNNNNNGG 3 cut(s) 662, 663, 948
BsmAI GTCTC 2 cut(s) 226, 705
BsmFI GGGAC 4 cut(s) 416, 642, 787, 975
BsmI GAATGC 2 cut(s) 759, 1050
BsnI GGCC 4 cut(s) 183, 371, 957, 1013
Bso31I GGTCTC 1 cut(s) 226
Bsp143I GATC 4 cut(s) 360, 441, 634, 745
BspACI CCGC 6 cut(s) 57, 109, 121, 138, 174, 306
BspANI GGCC 4 cut(s) 183, 371, 957, 1013
BspCNI CTCAG 5 cut(s) 32, 715, 769, 925, 961
BspFNI CGCG 3 cut(s) 32, 123, 306
BspLI GGNNCC 5 cut(s) 69, 136, 295, 550, 991
BspPI GGATC 1 cut(s) 629
BspT107I GGYRCC 3 cut(s) 134, 293, 548
BspTNI GGTCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 519
BsrFI RCCGGY 5 cut(s) 170, 290, 371, 545, 1013
BsrI ACTGG 2 cut(s) 360, 967
BssAI RCCGGY 5 cut(s) 170, 290, 371, 545, 1013
BssECI CCNNGG 4 cut(s) 256, 638, 862, 942
BssMI GATC 4 cut(s) 360, 441, 634, 745
BssNI GRCGYC 2 cut(s) 243, 294
BssT1I CCWWGG 2 cut(s) 638, 942
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 3 cut(s) 103, 514, 570
Bst6I CTCTTC 1 cut(s) 699
BstACI GRCGYC 2 cut(s) 243, 294
BstAPI GCANNNNNTGC 1 cut(s) 833
BstC8I GCNNGC 8 cut(s) 172, 185, 373, 377, 856, 869, 883, 1015
BstDEI CTNAG 6 cut(s) 19, 561, 702, 777, 912, 969
BstF5I GGATG 4 cut(s) 10, 363, 649, 938
BstFNI CGCG 3 cut(s) 32, 123, 306
BstH2I RGCGCY 2 cut(s) 297, 341
BstHHI GCGC 4 cut(s) 125, 296, 306, 340
BstKTI GATC 4 cut(s) 363, 444, 637, 748
BstMAI GTCTC 2 cut(s) 226, 705
BstMBI GATC 4 cut(s) 360, 441, 634, 745
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 7 cut(s) 117, 180, 325, 809, 833, 864, 905
BstNI CCWGG 1 cut(s) 460
BstNSI RCATGY 1 cut(s) 858
BstSCI CCNGG 4 cut(s) 256, 366, 388, 458
BstUI CGCG 3 cut(s) 32, 123, 306
BstV1I GCAGC 9 cut(s) 16, 19, 82, 179, 331, 334, 337, 511, 820
BstZI CGGCCG 1 cut(s) 369
BsuRI GGCC 4 cut(s) 183, 371, 957, 1013
BtsCI GGATG 4 cut(s) 10, 363, 649, 938
BtsIMutI CAGTG 3 cut(s) 99, 451, 510
Cac8I GCNNGC 8 cut(s) 172, 185, 373, 377, 856, 869, 883, 1015
CaiI CAGNNNCTG 2 cut(s) 328, 465
CfoI GCGC 4 cut(s) 125, 296, 306, 340
Cfr10I RCCGGY 5 cut(s) 170, 290, 371, 545, 1013
Cfr13I GGNCC 3 cut(s) 67, 989, 1011
Csp6I GTAC 5 cut(s) 135, 472, 549, 947, 960
CviAII CATG 6 cut(s) 196, 283, 583, 671, 717, 855
CviQI GTAC 5 cut(s) 135, 472, 549, 947, 960
DdeI CTNAG 6 cut(s) 19, 561, 702, 777, 912, 969
DinI GGCGCC 1 cut(s) 295
DpnI GATC 4 cut(s) 362, 443, 636, 747
DpnII GATC 4 cut(s) 360, 441, 634, 745
DraI TTTAAA 1 cut(s) 537
EaeI YGGCCR 2 cut(s) 369, 955
EagI CGGCCG 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
EciI GGCGGA 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 638, 942
Eco31I GGTCTC 1 cut(s) 226
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 2 cut(s) 67, 989
Eco47III AGCGCT 1 cut(s) 339
Eco52I CGGCCG 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 458
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 638, 942
EcoT22I ATGCAT 1 cut(s) 856
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
ErhI CCWWGG 2 cut(s) 638, 942
FaeI CATG 6 cut(s) 199, 286, 586, 674, 720, 858
FaqI GGGAC 4 cut(s) 416, 642, 787, 975
FatI CATG 6 cut(s) 195, 282, 582, 670, 716, 854
FauI CCCGC 1 cut(s) 299
FauNDI CATATG 1 cut(s) 829
FbaI TGATCA 1 cut(s) 360
FokI GGATG 3 cut(s) 350, 656, 925
FspBI CTAG 4 cut(s) 15, 48, 639, 1040
GlaI GCGC 4 cut(s) 124, 295, 305, 339
GsuI CTGGAG 3 cut(s) 65, 819, 984
HaeII RGCGCY 2 cut(s) 297, 341
HaeIII GGCC 4 cut(s) 183, 371, 957, 1013
HhaI GCGC 4 cut(s) 125, 296, 306, 340
Hin1I GRCGYC 2 cut(s) 243, 294
Hin1II CATG 6 cut(s) 199, 286, 586, 674, 720, 858
Hin6I GCGC 4 cut(s) 123, 294, 304, 338
HinP1I GCGC 4 cut(s) 123, 294, 304, 338
HincII GTYRAC 3 cut(s) 106, 250, 484
HindII GTYRAC 3 cut(s) 106, 250, 484
HinfI GANTC 2 cut(s) 34, 51
HpaI GTTAAC 2 cut(s) 106, 484
HphI GGTGA 2 cut(s) 370, 718
Hpy166II GTNNAC 5 cut(s) 28, 106, 250, 484, 505
Hpy188I TCNGA 7 cut(s) 22, 164, 271, 765, 863, 1056, 1076
Hpy188III TCNNGA 3 cut(s) 65, 82, 436
Hpy8I GTNNAC 5 cut(s) 28, 106, 250, 484, 505
Hpy99I CGWCG 3 cut(s) 245, 248, 302
HpyAV CCTTC 3 cut(s) 940, 1018, 1051
HpyCH4III ACNGT 3 cut(s) 103, 514, 570
HpyCH4IV ACGT 2 cut(s) 243, 486
HpyCH4V TGCA 7 cut(s) 4, 674, 812, 848, 854, 899, 938
HpyF10VI GCNNNNNNNGC 7 cut(s) 117, 180, 325, 809, 833, 864, 905
HpyF3I CTNAG 6 cut(s) 19, 561, 702, 777, 912, 969
HpySE526I ACGT 2 cut(s) 243, 486
Hsp92I GRCGYC 2 cut(s) 243, 294
Hsp92II CATG 6 cut(s) 199, 286, 586, 674, 720, 858
HspAI GCGC 4 cut(s) 123, 294, 304, 338
KasI GGCGCC 1 cut(s) 293
KpnI GGTACC 2 cut(s) 138, 552
KroI GCCGGC 3 cut(s) 170, 371, 1013
KroNI GCCGGC 3 cut(s) 172, 373, 1015
Ksp22I TGATCA 1 cut(s) 360
KspAI GTTAAC 2 cut(s) 106, 484
Kzo9I GATC 4 cut(s) 360, 441, 634, 745
LmnI GCTCC 3 cut(s) 164, 800, 965
Lsp1109I GCAGC 9 cut(s) 16, 19, 82, 179, 331, 334, 337, 511, 820
LweI GCATC 4 cut(s) 19, 841, 868, 947
MaeI CTAG 4 cut(s) 15, 48, 639, 1040
MaeII ACGT 2 cut(s) 243, 486
MaeIII GTNAC 5 cut(s) 143, 262, 577, 679, 916
MalI GATC 4 cut(s) 362, 443, 636, 747
MboI GATC 4 cut(s) 360, 441, 634, 745
MboII GAAGA 2 cut(s) 217, 686
MluCI AATT 4 cut(s) 115, 429, 684, 842
Mly113I GGCGCC 1 cut(s) 294
Mph1103I ATGCAT 1 cut(s) 856
MroNI GCCGGC 3 cut(s) 170, 371, 1013
MseI TTAA 6 cut(s) 105, 414, 483, 536, 708, 840
MslI CAYNNNNRTG 1 cut(s) 200
MspA1I CMGCKG 2 cut(s) 140, 328
MspR9I CCNGG 4 cut(s) 258, 368, 390, 460
Mva1269I GAATGC 2 cut(s) 759, 1050
MvaI CCWGG 1 cut(s) 460
MvnI CGCG 3 cut(s) 32, 123, 306
MwoI GCNNNNNNNGC 7 cut(s) 117, 180, 325, 809, 833, 864, 905
NaeI GCCGGC 3 cut(s) 172, 373, 1015
NarI GGCGCC 1 cut(s) 294
NciI CCSGG 3 cut(s) 258, 368, 390
NdeI CATATG 1 cut(s) 829
NdeII GATC 4 cut(s) 360, 441, 634, 745
NgoMIV GCCGGC 3 cut(s) 170, 371, 1013
NlaIII CATG 6 cut(s) 199, 286, 586, 674, 720, 858
NlaIV GGNNCC 5 cut(s) 69, 136, 295, 550, 991
NsiI ATGCAT 1 cut(s) 856
NspI RCATGY 1 cut(s) 858
PaeI GCATGC 1 cut(s) 858
PcsI WCGNNNNNNNCGW 2 cut(s) 654, 955
PctI GAATGC 2 cut(s) 759, 1050
PdiI GCCGGC 3 cut(s) 172, 373, 1015
PfeI GAWTC 2 cut(s) 34, 51
Pfl23II CGTACG 1 cut(s) 471
PflFI GACNNNGTC 1 cut(s) 245
PluTI GGCGCC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 458
PspGI CCWGG 1 cut(s) 458
PspLI CGTACG 1 cut(s) 471
PspN4I GGNNCC 5 cut(s) 69, 136, 295, 550, 991
PspPI GGNCC 3 cut(s) 67, 989, 1011
PstNI CAGNNNCTG 2 cut(s) 328, 465
PsyI GACNNNGTC 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 5 cut(s) 136, 473, 550, 948, 961
RsaNI GTAC 5 cut(s) 135, 472, 549, 947, 960
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 6 cut(s) 105, 414, 483, 536, 708, 840
Sau3AI GATC 4 cut(s) 360, 441, 634, 745
Sau96I GGNCC 3 cut(s) 67, 989, 1011
ScrFI CCNGG 4 cut(s) 258, 368, 390, 460
SfaNI GCATC 4 cut(s) 19, 841, 868, 947
SfoI GGCGCC 1 cut(s) 295
SgrAI CRCCGGYG 1 cut(s) 290
SinI GGWCC 2 cut(s) 67, 989
SmiMI CAYNNNNRTG 1 cut(s) 200
SphI GCATGC 1 cut(s) 858
Sse9I AATT 4 cut(s) 115, 429, 684, 842
SsiI CCGC 6 cut(s) 57, 109, 121, 138, 174, 306
SspDI GGCGCC 1 cut(s) 293
SspMI CTAG 4 cut(s) 15, 48, 639, 1040
StyD4I CCNGG 4 cut(s) 256, 366, 388, 458
StyI CCWWGG 2 cut(s) 638, 942
TaaI ACNGT 3 cut(s) 103, 514, 570
TaiI ACGT 2 cut(s) 246, 489
TaqI TCGA 2 cut(s) 382, 891
TasI AATT 4 cut(s) 115, 429, 684, 842
TauI GCSGC 2 cut(s) 123, 177
TfiI GAWTC 2 cut(s) 34, 51
Tru1I TTAA 6 cut(s) 105, 414, 483, 536, 708, 840
Tru9I TTAA 6 cut(s) 105, 414, 483, 536, 708, 840
TscAI CASTG 3 cut(s) 106, 451, 517
TseI GCWGC 9 cut(s) 4, 7, 95, 167, 319, 322, 325, 524, 833
TspDTI ATGAA 2 cut(s) 218, 224
TspGWI ACGGA 3 cut(s) 55, 214, 459
TspRI CASTG 3 cut(s) 106, 451, 517
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 67, 989
XapI RAATTY 1 cut(s) 842
XceI RCATGY 1 cut(s) 858
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmaJI CCTAGG 1 cut(s) 638
XspI CTAG 4 cut(s) 15, 48, 639, 1040
ZraI GACGTC 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.