Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014980

Physical Location & Seq

Genomic Coordinates Forward (+)

21777026 .. 21779577

Gene Structure 2552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g26720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCAGCAGCATCCTAGCTCAGAAGTCAACGTGAATCAACGGATTGCTAGAATCTCCGCCCATCTGGACCCTCCAAATATCCAGATGGAGAACGCTGCCACTGTTAGCCGCTTGAATTGCCGCGCCAAAGGCGGTACCGCTGGTTACAAAGTAGCCATACTCGGAGCAGCCGGCGGCATAGGCCAGCCTCTCGCCATGTTGATGAAGATGAACCCTTTGATCTCCGTTCTCCACCTATACGACGTCGTCAACACCCCCGGCGTCACCTCCGATATCAGCCACATGGACACCGGCGCCGTCGTGCGCGGGTTTTTGGGGCAGCAGCAGCTGGACGAAGCGCTAACCGGAATGGAACTGGTGATCATCCCGGCCGGCGTGCCTCGAAAACCCGGAATGACAAGGGACGATTTGTTTAACATCAATGCCGGAATTGTCAAGACGATCAGTGAAGCAATCGCCAGGTGCTGTCCGAACGCCATTGTTAACGTGATTAGCAACCCTGTGAACTCCACTAAACTGTTGGGAGTTACCATGCTTGATGTTGTTAGAGCCAATACTTTTGTGGCAGAGGTTTTGGGACTTGATCCTAGGGACGTCGATGTTCCCGTTGTTGGGGGTCATGCAGGGGTTACAATTTTGCCTCTTCTGTCTCAGGTTAAGCCTCCATGTTCTTTCACCCCGAAAGAAGTTGATGATCTAACGTATCGCATTCAGAATGGTGGAACTGAGGTTGTGGAGGCAAAAGCTGGAGCTGGTTCTGCAACATTATCAATGGCATATGCTGCTGTTAAATTTGCAGATGCATGCCTCCGAGGCTTGCGAGGAGATGCTGGCATAGTCGAATGTGCATTTGTGGCTTCTCAGGTTACTGAACTTCCCTTCTTTGCATCCAAGGTACGGCTTGGCCGTACTGGAGCTGAGGGAATATACCCTCTTGGTCCCCTGAATGAGTATGAGAGGGCCGGCTTGGAGAAGGCAAAGAGAGAACTAGCAACAAGCATTCAGAAGGGGGTTTCTTTCGTCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0009514 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

344

Amino Acids

36.21

Weight (kDa)

8.18

Isoelectric Point (pI)

23.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22780
fragaria_vesca	FvH4_1g18690 FvH4_1g18690 FvH4_1g18690
malus_domestica	MD02G1194500.v1.1 MD15G1304800.v1.1
prunus_persica	Prupe.6G212400_v2.0.a1 Prupe.6G212400_v2.0.a1
pyrus_communis	pycom02g15840 pycom15g26720
rosa_chinensis	RchiOBHm_Chr2g0109561
rosa_laevigata	RLG00000017745
rosa_multiflora	Rmu_sc0000332.1_g000042
rosa_roxburghii	Rroxscaffold_2G00134150
rosa_rugosa	Rorug02G0160600
rosa_samantha	Rh2BG223200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	246, 597
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	134, 293
AccII	CGCG	2 cut(s)	123, 306
AciI	CCGC	7 cut(s)	57, 109, 121, 132, 138, 174, 306
AclWI	GGATC	1 cut(s)	578
AcoI	YGGCCR	2 cut(s)	369, 904
AcsI	RAATTY	1 cut(s)	791
AcyI	GRCGYC	4 cut(s)	243, 261, 294, 594
AfaI	GTAC	3 cut(s)	136, 897, 910
AfeI	AGCGCT	1 cut(s)	339
AfiI	CCNNNNNNNGG	3 cut(s)	611, 612, 897
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	5 cut(s)	18, 328, 746, 752, 917
AluI	AGCT	5 cut(s)	18, 328, 746, 752, 917
Alw26I	GTCTC	1 cut(s)	654
AlwI	GGATC	1 cut(s)	578
AlwNI	CAGNNNCTG	2 cut(s)	328, 465
Aor51HI	AGCGCT	1 cut(s)	339
AoxI	GGCC	4 cut(s)	181, 369, 904, 960
ApeKI	GCWGC	8 cut(s)	4, 7, 95, 167, 319, 322, 325, 782
ApoI	RAATTY	1 cut(s)	791
Asp718I	GGTACC	1 cut(s)	134
AspA2I	CCTAGG	1 cut(s)	587
AspLEI	GCGC	4 cut(s)	125, 296, 306, 340
AspS9I	GGNCC	3 cut(s)	67, 938, 960
AsuC2I	CCSGG	3 cut(s)	258, 368, 390
AsuHPI	GGTGA	3 cut(s)	256, 370, 667
AvaII	GGWCC	2 cut(s)	67, 938
AvrII	CCTAGG	1 cut(s)	587
BanI	GGYRCC	2 cut(s)	134, 293
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	8 cut(s)	16, 19, 82, 179, 331, 334, 337, 769
BccI	CCATC	2 cut(s)	69, 79
BceAI	ACGGC	3 cut(s)	281, 891, 914
BciT130I	CCWGG	1 cut(s)	460
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	3 cut(s)	258, 368, 390
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	4 cut(s)	15, 48, 588, 989
BfoI	RGCGCY	2 cut(s)	297, 341
BglI	GCCNNNNNGGC	1 cut(s)	813
BlnI	CCTAGG	1 cut(s)	587
Bme1390I	CCNGG	4 cut(s)	258, 368, 390, 460
Bme18I	GGWCC	2 cut(s)	67, 938
BmgT120I	GGNCC	3 cut(s)	67, 938, 960
BmiI	GGNNCC	4 cut(s)	69, 136, 295, 940
BmrFI	CCNGG	4 cut(s)	258, 368, 390, 460
BmsI	GCATC	4 cut(s)	19, 790, 817, 896
BpmI	CTGGAG	2 cut(s)	768, 933
Bpu10I	CCTNAGC	1 cut(s)	918
BpuMI	CCSGG	3 cut(s)	258, 368, 390
BsaHI	GRCGYC	4 cut(s)	243, 261, 294, 594
BsaJI	CCNNGG	4 cut(s)	256, 587, 811, 891
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	3 cut(s)	611, 612, 897
Bse118I	RCCGGY	4 cut(s)	170, 290, 371, 962
Bse1I	ACTGG	2 cut(s)	360, 916
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	4 cut(s)	256, 587, 811, 891
BseGI	GGATG	3 cut(s)	10, 363, 887
BseLI	CCNNNNNNNGG	3 cut(s)	611, 612, 897
BseMII	CTCAG	5 cut(s)	33, 665, 717, 875, 909
BseNI	ACTGG	2 cut(s)	360, 916
BseRI	GAGGAG	1 cut(s)	837
BseX3I	CGGCCG	1 cut(s)	369
BseXI	GCAGC	8 cut(s)	16, 19, 82, 179, 331, 334, 337, 769
Bsh1236I	CGCG	2 cut(s)	123, 306
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	4 cut(s)	183, 371, 906, 962
BshNI	GGYRCC	2 cut(s)	134, 293
BsiEI	CGRYCG	1 cut(s)	372
BsiSI	CCGG	9 cut(s)	171, 258, 291, 345, 368, 372, 390, 426, 963
BslFI	GGGAC	4 cut(s)	416, 591, 605, 924
BslI	CCNNNNNNNGG	3 cut(s)	611, 612, 897
BsmAI	GTCTC	1 cut(s)	654
BsmFI	GGGAC	4 cut(s)	416, 591, 605, 924
BsmI	GAATGC	2 cut(s)	708, 999
BsnI	GGCC	4 cut(s)	183, 371, 906, 962
Bsp143I	GATC	5 cut(s)	219, 360, 441, 583, 694
BspACI	CCGC	7 cut(s)	57, 109, 121, 132, 138, 174, 306
BspANI	GGCC	4 cut(s)	183, 371, 906, 962
BspCNI	CTCAG	5 cut(s)	32, 664, 718, 874, 910
BspFNI	CGCG	2 cut(s)	123, 306
BspLI	GGNNCC	4 cut(s)	69, 136, 295, 940
BspPI	GGATC	1 cut(s)	578
BspT107I	GGYRCC	2 cut(s)	134, 293
BsrFI	RCCGGY	4 cut(s)	170, 290, 371, 962
BsrI	ACTGG	2 cut(s)	360, 916
BssAI	RCCGGY	4 cut(s)	170, 290, 371, 962
BssECI	CCNNGG	4 cut(s)	256, 587, 811, 891
BssMI	GATC	5 cut(s)	219, 360, 441, 583, 694
BssNI	GRCGYC	4 cut(s)	243, 261, 294, 594
BssT1I	CCWWGG	2 cut(s)	587, 891
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	2 cut(s)	103, 519
Bst6I	CTCTTC	1 cut(s)	648
BstACI	GRCGYC	4 cut(s)	243, 261, 294, 594
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	8 cut(s)	172, 185, 373, 377, 805, 818, 832, 964
BstDEI	CTNAG	5 cut(s)	19, 651, 726, 861, 918
BstF5I	GGATG	3 cut(s)	10, 363, 887
BstFNI	CGCG	2 cut(s)	123, 306
BstH2I	RGCGCY	2 cut(s)	297, 341
BstHHI	GCGC	4 cut(s)	125, 296, 306, 340
BstKTI	GATC	5 cut(s)	222, 363, 444, 586, 697
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	5 cut(s)	219, 360, 441, 583, 694
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	8 cut(s)	117, 129, 180, 325, 758, 782, 813, 854
BstNI	CCWGG	1 cut(s)	460
BstNSI	RCATGY	1 cut(s)	807
BstSCI	CCNGG	4 cut(s)	256, 366, 388, 458
BstUI	CGCG	2 cut(s)	123, 306
BstV1I	GCAGC	8 cut(s)	16, 19, 82, 179, 331, 334, 337, 769
BstZI	CGGCCG	1 cut(s)	369
BsuRI	GGCC	4 cut(s)	183, 371, 906, 962
BtsCI	GGATG	3 cut(s)	10, 363, 887
BtsIMutI	CAGTG	2 cut(s)	99, 451
Cac8I	GCNNGC	8 cut(s)	172, 185, 373, 377, 805, 818, 832, 964
CaiI	CAGNNNCTG	2 cut(s)	328, 465
CfoI	GCGC	4 cut(s)	125, 296, 306, 340
Cfr10I	RCCGGY	4 cut(s)	170, 290, 371, 962
Cfr13I	GGNCC	3 cut(s)	67, 938, 960
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	3 cut(s)	135, 896, 909
CviAII	CATG	6 cut(s)	196, 283, 532, 620, 666, 804
CviQI	GTAC	3 cut(s)	135, 896, 909
DdeI	CTNAG	5 cut(s)	19, 651, 726, 861, 918
DinI	GGCGCC	1 cut(s)	295
DpnI	GATC	5 cut(s)	221, 362, 443, 585, 696
DpnII	GATC	5 cut(s)	219, 360, 441, 583, 694
EaeI	YGGCCR	2 cut(s)	369, 904
EagI	CGGCCG	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
EciI	GGCGGA	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	369
Eco130I	CCWWGG	2 cut(s)	587, 891
Eco32I	GATATC	1 cut(s)	274
Eco47I	GGWCC	2 cut(s)	67, 938
Eco47III	AGCGCT	1 cut(s)	339
Eco52I	CGGCCG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	458
EcoRV	GATATC	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	587, 891
EcoT22I	ATGCAT	1 cut(s)	805
EgeI	GGCGCC	1 cut(s)	295
EheI	GGCGCC	1 cut(s)	295
ErhI	CCWWGG	2 cut(s)	587, 891
FaeI	CATG	6 cut(s)	199, 286, 535, 623, 669, 807
FaqI	GGGAC	4 cut(s)	416, 591, 605, 924
FatI	CATG	6 cut(s)	195, 282, 531, 619, 665, 803
FauI	CCCGC	1 cut(s)	299
FauNDI	CATATG	1 cut(s)	778
FbaI	TGATCA	1 cut(s)	360
FokI	GGATG	2 cut(s)	350, 874
FspBI	CTAG	4 cut(s)	15, 48, 588, 989
GlaI	GCGC	4 cut(s)	124, 295, 305, 339
GsuI	CTGGAG	2 cut(s)	768, 933
HaeII	RGCGCY	2 cut(s)	297, 341
HaeIII	GGCC	4 cut(s)	183, 371, 906, 962
HapII	CCGG	9 cut(s)	171, 258, 291, 345, 368, 372, 390, 426, 963
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	4 cut(s)	125, 296, 306, 340
Hin1I	GRCGYC	4 cut(s)	243, 261, 294, 594
Hin1II	CATG	6 cut(s)	199, 286, 535, 623, 669, 807
Hin6I	GCGC	4 cut(s)	123, 294, 304, 338
HinP1I	GCGC	4 cut(s)	123, 294, 304, 338
HincII	GTYRAC	3 cut(s)	28, 250, 484
HindII	GTYRAC	3 cut(s)	28, 250, 484
HinfI	GANTC	2 cut(s)	34, 51
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	9 cut(s)	171, 258, 291, 345, 368, 372, 390, 426, 963
HphI	GGTGA	3 cut(s)	256, 370, 667
Hpy166II	GTNNAC	4 cut(s)	28, 250, 484, 505
Hpy188I	TCNGA	8 cut(s)	22, 164, 271, 471, 714, 812, 1005, 1025
Hpy188III	TCNNGA	3 cut(s)	65, 82, 436
Hpy8I	GTNNAC	4 cut(s)	28, 250, 484, 505
Hpy99I	CGWCG	4 cut(s)	245, 248, 302, 599
HpyAV	CCTTC	3 cut(s)	889, 967, 1000
HpyCH4III	ACNGT	2 cut(s)	103, 519
HpyCH4IV	ACGT	5 cut(s)	30, 243, 486, 594, 701
HpyCH4V	TGCA	7 cut(s)	4, 623, 761, 797, 803, 848, 887
HpyF10VI	GCNNNNNNNGC	8 cut(s)	117, 129, 180, 325, 758, 782, 813, 854
HpyF3I	CTNAG	5 cut(s)	19, 651, 726, 861, 918
HpySE526I	ACGT	5 cut(s)	30, 243, 486, 594, 701
Hsp92I	GRCGYC	4 cut(s)	243, 261, 294, 594
Hsp92II	CATG	6 cut(s)	199, 286, 535, 623, 669, 807
HspAI	GCGC	4 cut(s)	123, 294, 304, 338
KasI	GGCGCC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	138
KroI	GCCGGC	3 cut(s)	170, 371, 962
KroNI	GCCGGC	3 cut(s)	172, 373, 964
Ksp22I	TGATCA	1 cut(s)	360
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	5 cut(s)	219, 360, 441, 583, 694
LmnI	GCTCC	3 cut(s)	164, 749, 914
Lsp1109I	GCAGC	8 cut(s)	16, 19, 82, 179, 331, 334, 337, 769
LweI	GCATC	4 cut(s)	19, 790, 817, 896
MaeI	CTAG	4 cut(s)	15, 48, 588, 989
MaeII	ACGT	5 cut(s)	30, 243, 486, 594, 701
MaeIII	GTNAC	5 cut(s)	143, 262, 526, 628, 865
MalI	GATC	5 cut(s)	221, 362, 443, 585, 696
MboI	GATC	5 cut(s)	219, 360, 441, 583, 694
MboII	GAAGA	2 cut(s)	217, 635
MluCI	AATT	4 cut(s)	115, 429, 633, 791
Mly113I	GGCGCC	1 cut(s)	294
Mph1103I	ATGCAT	1 cut(s)	805
MroNI	GCCGGC	3 cut(s)	170, 371, 962
MseI	TTAA	4 cut(s)	414, 483, 657, 789
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	140, 328
MspI	CCGG	9 cut(s)	171, 258, 291, 345, 368, 372, 390, 426, 963
MspR9I	CCNGG	4 cut(s)	258, 368, 390, 460
Mva1269I	GAATGC	2 cut(s)	708, 999
MvaI	CCWGG	1 cut(s)	460
MvnI	CGCG	2 cut(s)	123, 306
MwoI	GCNNNNNNNGC	8 cut(s)	117, 129, 180, 325, 758, 782, 813, 854
NaeI	GCCGGC	3 cut(s)	172, 373, 964
NarI	GGCGCC	1 cut(s)	294
NciI	CCSGG	3 cut(s)	258, 368, 390
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	5 cut(s)	219, 360, 441, 583, 694
NgoMIV	GCCGGC	3 cut(s)	170, 371, 962
NlaIII	CATG	6 cut(s)	199, 286, 535, 623, 669, 807
NlaIV	GGNNCC	4 cut(s)	69, 136, 295, 940
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	1 cut(s)	807
PaeI	GCATGC	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	2 cut(s)	603, 904
PctI	GAATGC	2 cut(s)	708, 999
PdiI	GCCGGC	3 cut(s)	172, 373, 964
PfeI	GAWTC	2 cut(s)	34, 51
PflFI	GACNNNGTC	1 cut(s)	245
PluTI	GGCGCC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PspN4I	GGNNCC	4 cut(s)	69, 136, 295, 940
PspPI	GGNCC	3 cut(s)	67, 938, 960
PstNI	CAGNNNCTG	2 cut(s)	328, 465
PsyI	GACNNNGTC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	3 cut(s)	136, 897, 910
RsaNI	GTAC	3 cut(s)	135, 896, 909
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	4 cut(s)	414, 483, 657, 789
Sau3AI	GATC	5 cut(s)	219, 360, 441, 583, 694
Sau96I	GGNCC	3 cut(s)	67, 938, 960
ScrFI	CCNGG	4 cut(s)	258, 368, 390, 460
SfaNI	GCATC	4 cut(s)	19, 790, 817, 896
SfoI	GGCGCC	1 cut(s)	295
SgrAI	CRCCGGYG	1 cut(s)	290
SinI	GGWCC	2 cut(s)	67, 938
SmiMI	CAYNNNNRTG	1 cut(s)	200
SphI	GCATGC	1 cut(s)	807
Sse9I	AATT	4 cut(s)	115, 429, 633, 791
SsiI	CCGC	7 cut(s)	57, 109, 121, 132, 138, 174, 306
SspDI	GGCGCC	1 cut(s)	293
SspMI	CTAG	4 cut(s)	15, 48, 588, 989
StyD4I	CCNGG	4 cut(s)	256, 366, 388, 458
StyI	CCWWGG	2 cut(s)	587, 891
TaaI	ACNGT	2 cut(s)	103, 519
TaiI	ACGT	5 cut(s)	33, 246, 489, 597, 704
TaqI	TCGA	3 cut(s)	382, 597, 840
TasI	AATT	4 cut(s)	115, 429, 633, 791
TauI	GCSGC	3 cut(s)	111, 123, 177
TfiI	GAWTC	2 cut(s)	34, 51
Tru1I	TTAA	4 cut(s)	414, 483, 657, 789
Tru9I	TTAA	4 cut(s)	414, 483, 657, 789
TscAI	CASTG	2 cut(s)	106, 451
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	8 cut(s)	4, 7, 95, 167, 319, 322, 325, 782
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	218, 224
TspGWI	ACGGA	2 cut(s)	55, 214
TspRI	CASTG	2 cut(s)	106, 451
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	67, 938
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	1 cut(s)	807
XcmI	CCANNNNNNNNNTGG	2 cut(s)	517, 559
XmaJI	CCTAGG	1 cut(s)	587
XspI	CTAG	4 cut(s)	15, 48, 588, 989
ZraI	GACGTC	2 cut(s)	244, 595
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.