FvH4_1g19610

Protein SGT1 homolog At5g65490-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011479
Physical Location & Seq
Forward (+)
11841864 .. 11847119
5256 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19610.t1

Sequence Viewer

Length: 1965 bp
ATGGCGGCACCACCAGACCTGGACCCGTCCTCAATTTTCTCCGAAAAACACTCCCGCCTCCCAGACGACACCGTTTTCTACGCCATATTCCCCGACTTCTCCCTCACCTCCACCGCCACCTCCGCCGCCTCCCTCCACTCCCTCCACCTCCAAATCCTCCAAACCCTAACTCCCCTCACCTCCGACTACATCTGGCAGCACCAGCCCTTCTCTCTCTCCCCCTCCGCCTCCCCCAAACCCTCCTGCCTCTGCTCCAACCACCTCCCCCACCTCCACGGCCACCTCCGCGTCGGCGACAATCTCGACGACGAGTGGTTCACCGTCTTCCTCCTCTTCCACATCTCCACTGTCTTCCCCGACCTCTCCATCCGCGTCTGGGACTCCGACGGCGAGTTTCTACTCATCGAAGCCGCCTTTCATCTCCCTCGGTGGCTCAACCCTCAGACGAGCTCCAACCGCGTCTTCATCCGCCGCGGGAAGGTTCATATTGTTCCCCGGCACCGCCTCCGGAACCCTAACCTCGCCGAAGCGTTGAGCTTCGTTGTGAGTTTCGGCGAGGAGTCGGTTGCGGCGGAGGCGGTGCAGGCTGCGGTGAGGAAGAGGATAGAGGAGTATCCGGAGAAGGCGAGGAGGAATATGCATAGGGTTAGGGTTAGGGTTCCGGCGGCGGTGGCTCAGGTGTTGAGCCAGGAGCCGTGTCTGGTTGCGTTGGCGGTTGAGGGGTTCTATGACAGGGACATTGACACTATGAAGTATGCGGCGAAGATGGAGAGGTTCTTGAGCAGAGGGAGAGAGGAGGAGGAGTTGGTGTGCATTTCGGTGAAAATGTCGAGGGCAATGTATGCACAGCTGGTGCAGCAGACATTTCAGGCGCCGAAATGCTATCCGATGCCGAATAGGAGTGATTCGGCATATGTGGAGGCTGAATTGGGGATGAAGATTGCGTGTGGGTTGGAAATGATGTATCAGCATAGGAGGAAGGAGGGGTCAGAAGGGAAAGGGAGTACTTGGGAGGCGTTTAGGGAAAGTTTGGAGAGGAGTGGTTATTTTGGAGGGTTGCTTCCAGGTTCAAAAGAGTACCAGAGGTTGATGCAGAATGCGGAGGAGTATTACCGGAGCAGTGCTTCCTTTTCAAGGGCTAGTGAGATGATGAGTGCTCCAGTGAGGCGCATAGATGAGATTCTTGCTTTACCTTATTCAGTGGATGACTTTAAGTGTGTAGATGTGCCACCTTCTGATGATGATTCTTGGCTTTACAATGGAGAGGATGAATTGAACTCTGAACTTTTAGAGAGACAAAAGGAGATGGAACTGTATGATTTAAAACATAAGAAGACGCAGAAGTCAAAAGAGCAGGACAATGTTGGTCCATCCTCTAGCTCTAACTCTGATGCGTTCAATCCTGGTGATATAGCCAAAACCATGCAGGCCTTTGTCGAAAAAGTGTCAAGCTACAAGGGAGCCGAGGTTCCTGAGAACAGGAACCTAAAAGACGTGGACCTTGATGCGGACTGTTTCTTCAAAGATGTAGAGTCAATGATGAAAAGTCATGGTGGTGAAGAAGGTAGAAGTGATGATGATATTGAAGAAGGGTCTTCATCCGACTTGGATTTTGATGATTCGGAAGATGGAATAGATGGTGCAGAACTTTCTGAAGATATTGAGGACGGAGAGGATACTTTCATGCATTCTTACTCTGATGCTTTAAATGAAGAATTGAAGAGCACTACACTTGAGAAGAGTTTTGTGCGTGCTAATGAACAAGCCCCAAAGAAAGATGAGGGAACATCGAATGCAGCAGAAGATATGGAGGAGGATTTCACTCCTGTGGATGTGGATGTGAATCTGGTAAAGAGTCTTCTTGATTCCTTCTCTAGCCAACAAGGCCTTCCTGGTCCTGCTTCCAATTTGCTTGGCCTTATGGGTTTACAACTCCCACAAGAGGACAAAAAGGAGGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SGT1

Protein Analysis

655

Amino Acids

73.51

Weight (kDa)

4.78

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGT1 PF07093 25 - 613 1.3e-201 SGT1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1342
AccB1I GGYRCC 3 cut(s) 7, 498, 871
AccII CGCG 4 cut(s) 288, 372, 459, 474
AccIII TCCGGA 2 cut(s) 507, 616
AcoI YGGCCR 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 1674
AcyI GRCGYC 1 cut(s) 872
AfaI GTAC 2 cut(s) 1006, 1079
AfiI CCNNNNNNNGG 5 cut(s) 376, 478, 1134, 1507, 1942
AgsI TTSAA 7 cut(s) 1071, 1134, 1276, 1399, 1522, 1586, 1720
AjiI CACGTC 1 cut(s) 1495
AjnI CCWGG 5 cut(s) 18, 687, 1063, 1402, 1891
AjuI GAANNNNNNNTTGG 4 cut(s) 446, 478, 1872, 1904
AleI CACNNNNGTG 1 cut(s) 1826
AloI GAACNNNNNNTCC 2 cut(s) 1452, 1484
AluBI AGCT 5 cut(s) 450, 537, 850, 1380, 1452
AluI AGCT 5 cut(s) 450, 537, 850, 1380, 1452
Alw21I GWGCWC 3 cut(s) 452, 1159, 1727
Alw26I GTCTC 1 cut(s) 1288
Aor13HI TCCGGA 2 cut(s) 507, 616
AoxI GGCC 4 cut(s) 277, 1428, 1885, 1915
ApeKI GCWGC 4 cut(s) 196, 587, 856, 1796
ArsI GACNNNNNNTTYG 2 cut(s) 1595, 1627
AspLEI GCGC 2 cut(s) 874, 1170
AspS9I GGNCC 4 cut(s) 22, 1367, 1498, 1895
AsuC2I CCSGG 1 cut(s) 496
AsuHPI GGTGA 7 cut(s) 97, 169, 310, 604, 832, 1418, 1568
AvaII GGWCC 4 cut(s) 22, 1367, 1498, 1895
BanI GGYRCC 3 cut(s) 7, 498, 871
BanII GRGCYC 1 cut(s) 452
BarI GAAGNNNNNNTAC 2 cut(s) 1842, 1874
BbsI GAAGAC 6 cut(s) 316, 343, 454, 1340, 1587, 1850
Bbv12I GWGCWC 3 cut(s) 452, 1159, 1727
BbvI GCAGC 4 cut(s) 208, 574, 868, 1808
BccI CCATC 6 cut(s) 374, 760, 1300, 1378, 1622, 1631
BceAI ACGGC 3 cut(s) 292, 403, 679
BciT130I CCWGG 5 cut(s) 20, 689, 1065, 1404, 1893
BciVI GTATCC 2 cut(s) 624, 1669
BcnI CCSGG 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 1288
BfaI CTAG 3 cut(s) 1140, 1377, 1875
BfoI RGCGCY 1 cut(s) 875
BfuI GTATCC 2 cut(s) 624, 1669
BglI GCCNNNNNGGC 1 cut(s) 1884
BmcAI AGTACT 1 cut(s) 1006
Bme1390I CCNGG 6 cut(s) 20, 496, 689, 1065, 1404, 1893
Bme18I GGWCC 4 cut(s) 22, 1367, 1498, 1895
BmgBI CACGTC 1 cut(s) 1495
BmgT120I GGNCC 4 cut(s) 22, 1367, 1498, 1895
BmrFI CCNGG 6 cut(s) 20, 496, 689, 1065, 1404, 1893
BmsI GCATC 5 cut(s) 879, 1080, 1381, 1495, 1690
BpiI GAAGAC 6 cut(s) 316, 343, 454, 1340, 1587, 1850
BpmI CTGGAG 1 cut(s) 1143
Bpu10I CCTNAGC 1 cut(s) 675
BpuEI CTTGAG 2 cut(s) 799, 1754
BpuMI CCSGG 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 1842
BsaHI GRCGYC 1 cut(s) 872
BsaJI CCNNGG 5 cut(s) 274, 425, 472, 494, 1464
BsaWI WCCGGW 3 cut(s) 507, 616, 1113
BsaXI ACNNNNNCTCC 8 cut(s) 154, 184, 788, 794, 818, 824, 1452, 1482
Bsc4I CCNNNNNNNGG 5 cut(s) 376, 478, 1134, 1507, 1942
Bse1I ACTGG 1 cut(s) 1160
Bse3DI GCAATG 1 cut(s) 843
Bse8I GATNNNNATC 1 cut(s) 1842
BseAI TCCGGA 2 cut(s) 507, 616
BseBI CCWGG 5 cut(s) 20, 689, 1065, 1404, 1893
BseDI CCNNGG 5 cut(s) 274, 425, 472, 494, 1464
BseGI GGATG 9 cut(s) 366, 465, 939, 1210, 1273, 1370, 1598, 1837, 1843
BseJI GATNNNNATC 1 cut(s) 1842
BseLI CCNNNNNNNGG 5 cut(s) 376, 478, 1134, 1507, 1942
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 3 cut(s) 455, 689, 1464
BseNI ACTGG 1 cut(s) 1160
BseXI GCAGC 4 cut(s) 208, 574, 868, 1808
BsgI GTGCAG 3 cut(s) 602, 875, 1662
Bsh1236I CGCG 4 cut(s) 288, 372, 459, 474
BshFI GGCC 4 cut(s) 279, 1430, 1887, 1917
BshNI GGYRCC 3 cut(s) 7, 498, 871
BsiHKAI GWGCWC 3 cut(s) 452, 1159, 1727
BsiSI CCGG 5 cut(s) 496, 508, 617, 662, 1114
BslFI GGGAC 2 cut(s) 392, 749
BslI CCNNNNNNNGG 5 cut(s) 376, 478, 1134, 1507, 1942
BsmAI GTCTC 1 cut(s) 1288
BsmFI GGGAC 2 cut(s) 392, 749
BsmI GAATGC 3 cut(s) 1102, 1687, 1798
BsnI GGCC 4 cut(s) 279, 1430, 1887, 1917
Bsp1286I GDGCHC 3 cut(s) 452, 1159, 1727
Bsp13I TCCGGA 2 cut(s) 507, 616
BspANI GGCC 4 cut(s) 279, 1430, 1887, 1917
BspCNI CTCAG 3 cut(s) 454, 688, 1465
BspEI TCCGGA 2 cut(s) 507, 616
BspFNI CGCG 4 cut(s) 288, 372, 459, 474
BspQI GCTCTTC 1 cut(s) 1715
BspT107I GGYRCC 3 cut(s) 7, 498, 871
BsrDI GCAATG 1 cut(s) 843
BsrI ACTGG 1 cut(s) 1160
BssECI CCNNGG 5 cut(s) 274, 425, 472, 494, 1464
BssNI GRCGYC 1 cut(s) 872
Bst2UI CCWGG 5 cut(s) 20, 689, 1065, 1404, 1893
Bst4CI ACNGT 5 cut(s) 73, 322, 349, 1314, 1514
Bst6I CTCTTC 4 cut(s) 338, 593, 1715, 1733
BstACI GRCGYC 1 cut(s) 872
BstAPI GCANNNNNTGC 1 cut(s) 842
BstC8I GCNNGC 3 cut(s) 585, 1428, 1752
BstDEI CTNAG 3 cut(s) 441, 675, 1473
BstDSI CCRYGG 2 cut(s) 274, 472
BstENI CCTNNNNNAGG 1 cut(s) 1132
BstF5I GGATG 9 cut(s) 366, 465, 939, 1210, 1273, 1370, 1598, 1837, 1843
BstFNI CGCG 4 cut(s) 288, 372, 459, 474
BstH2I RGCGCY 1 cut(s) 875
BstHHI GCGC 2 cut(s) 874, 1170
BstMAI GTCTC 1 cut(s) 1288
BstNI CCWGG 5 cut(s) 20, 689, 1065, 1404, 1893
BstSCI CCNGG 6 cut(s) 18, 494, 687, 1063, 1402, 1891
BstUI CGCG 4 cut(s) 288, 372, 459, 474
BstV1I GCAGC 4 cut(s) 208, 574, 868, 1808
BstV2I GAAGAC 6 cut(s) 316, 343, 454, 1340, 1587, 1850
BsuI GTATCC 2 cut(s) 624, 1669
BsuRI GGCC 4 cut(s) 279, 1430, 1887, 1917
BtgI CCRYGG 2 cut(s) 274, 472
BtrI CACGTC 1 cut(s) 1495
BtsCI GGATG 9 cut(s) 366, 465, 939, 1210, 1273, 1370, 1598, 1837, 1843
BtsI GCAGTG 1 cut(s) 1126
BtsIMutI CAGTG 4 cut(s) 345, 1126, 1167, 1206
Cac8I GCNNGC 3 cut(s) 585, 1428, 1752
CfoI GCGC 2 cut(s) 874, 1170
Cfr13I GGNCC 4 cut(s) 22, 1367, 1498, 1895
Cfr42I CCGCGG 1 cut(s) 475
CseI GACGC 4 cut(s) 277, 361, 448, 1345
Csp6I GTAC 2 cut(s) 1005, 1078
CviAII CATG 3 cut(s) 1423, 1550, 1684
CviQI GTAC 2 cut(s) 1005, 1078
DdeI CTNAG 3 cut(s) 441, 675, 1473
DinI GGCGCC 1 cut(s) 873
DraI TTTAAA 2 cut(s) 1323, 1707
DrdI GACNNNNNNGTC 1 cut(s) 1342
DseDI GACNNNNNNGTC 1 cut(s) 1342
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 4 cut(s) 338, 593, 1715, 1733
EarI CTCTTC 4 cut(s) 338, 593, 1715, 1733
EciI GGCGGA 4 cut(s) 112, 214, 458, 587
Ecl136II GAGCTC 1 cut(s) 450
Eco147I AGGCCT 2 cut(s) 1430, 1887
Eco24I GRGCYC 1 cut(s) 452
Eco47I GGWCC 4 cut(s) 22, 1367, 1498, 1895
Eco53kI GAGCTC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 1674
EcoICRI GAGCTC 1 cut(s) 450
EcoNI CCTNNNNNAGG 1 cut(s) 1132
EcoRII CCWGG 5 cut(s) 18, 687, 1063, 1402, 1891
EcoT22I ATGCAT 2 cut(s) 642, 1689
EcoT38I GRGCYC 1 cut(s) 452
EgeI GGCGCC 1 cut(s) 873
EheI GGCGCC 1 cut(s) 873
FaeI CATG 3 cut(s) 1426, 1553, 1687
FaqI GGGAC 2 cut(s) 392, 749
FatI CATG 3 cut(s) 1422, 1549, 1683
FauI CCCGC 2 cut(s) 62, 467
FauNDI CATATG 1 cut(s) 913
FokI GGATG 9 cut(s) 353, 452, 946, 1217, 1280, 1357, 1585, 1844, 1850
FriOI GRGCYC 1 cut(s) 452
FspBI CTAG 3 cut(s) 1140, 1377, 1875
GlaI GCGC 2 cut(s) 873, 1169
GsuI CTGGAG 1 cut(s) 1143
HaeII RGCGCY 1 cut(s) 875
HaeIII GGCC 4 cut(s) 279, 1430, 1887, 1917
HapII CCGG 5 cut(s) 496, 508, 617, 662, 1114
HgaI GACGC 4 cut(s) 277, 361, 448, 1345
HhaI GCGC 2 cut(s) 874, 1170
Hin1I GRCGYC 1 cut(s) 872
Hin1II CATG 3 cut(s) 1426, 1553, 1687
Hin6I GCGC 2 cut(s) 872, 1168
HinP1I GCGC 2 cut(s) 872, 1168
HpaII CCGG 5 cut(s) 496, 508, 617, 662, 1114
HphI GGTGA 7 cut(s) 97, 169, 310, 604, 832, 1418, 1568
Hpy166II GTNNAC 3 cut(s) 318, 1498, 1928
Hpy188III TCNNGA 6 cut(s) 302, 508, 617, 778, 1472, 1862
Hpy8I GTNNAC 3 cut(s) 318, 1498, 1928
Hpy99I CGWCG 4 cut(s) 293, 308, 311, 389
HpyCH4III ACNGT 5 cut(s) 73, 322, 349, 1314, 1514
HpyCH4IV ACGT 1 cut(s) 1494
HpyF3I CTNAG 3 cut(s) 441, 675, 1473
HpySE526I ACGT 1 cut(s) 1494
Hsp92I GRCGYC 1 cut(s) 872
Hsp92II CATG 3 cut(s) 1426, 1553, 1687
HspAI GCGC 2 cut(s) 872, 1168
KasI GGCGCC 1 cut(s) 871
Kpn2I TCCGGA 2 cut(s) 507, 616
KspI CCGCGG 1 cut(s) 475
LguI GCTCTTC 1 cut(s) 1715
LmnI GCTCC 6 cut(s) 257, 455, 691, 1116, 1162, 1460
Lsp1109I GCAGC 4 cut(s) 208, 574, 868, 1808
LweI GCATC 5 cut(s) 879, 1080, 1381, 1495, 1690
MaeI CTAG 3 cut(s) 1140, 1377, 1875
MaeII ACGT 1 cut(s) 1494
MhlI GDGCHC 3 cut(s) 452, 1159, 1727
MluCI AATT 5 cut(s) 33, 926, 1271, 1715, 1906
Mly113I GGCGCC 1 cut(s) 872
MlyI GAGTC 4 cut(s) 374, 569, 1541, 1864
MmeI TCCRAC 6 cut(s) 207, 279, 408, 477, 933, 1626
Mph1103I ATGCAT 2 cut(s) 642, 1689
MroI TCCGGA 2 cut(s) 507, 616
MseI TTAA 3 cut(s) 1212, 1322, 1706
MslI CAYNNNNRTG 3 cut(s) 818, 1554, 1826
MspA1I CMGCKG 2 cut(s) 474, 850
MspI CCGG 5 cut(s) 496, 508, 617, 662, 1114
MspR9I CCNGG 6 cut(s) 20, 496, 689, 1065, 1404, 1893
Mva1269I GAATGC 3 cut(s) 1102, 1687, 1798
MvaI CCWGG 5 cut(s) 20, 689, 1065, 1404, 1893
MvnI CGCG 4 cut(s) 288, 372, 459, 474
NarI GGCGCC 1 cut(s) 872
NciI CCSGG 1 cut(s) 496
NdeI CATATG 1 cut(s) 913
NlaIII CATG 3 cut(s) 1426, 1553, 1687
NmeAIII GCCGAG 1 cut(s) 1489
NsiI ATGCAT 2 cut(s) 642, 1689
OliI CACNNNNGTG 1 cut(s) 1826
PceI AGGCCT 2 cut(s) 1430, 1887
PciSI GCTCTTC 1 cut(s) 1715
PctI GAATGC 3 cut(s) 1102, 1687, 1798
PfeI GAWTC 6 cut(s) 905, 1180, 1244, 1619, 1843, 1865
PleI GAGTC 4 cut(s) 374, 568, 1540, 1863
PluTI GGCGCC 1 cut(s) 875
PpsI GAGTC 4 cut(s) 374, 568, 1540, 1863
Psp124BI GAGCTC 1 cut(s) 452
Psp6I CCWGG 5 cut(s) 18, 687, 1063, 1402, 1891
PspGI CCWGG 5 cut(s) 18, 687, 1063, 1402, 1891
PspPI GGNCC 4 cut(s) 22, 1367, 1498, 1895
PvuII CAGCTG 1 cut(s) 850
RsaI GTAC 2 cut(s) 1006, 1079
RsaNI GTAC 2 cut(s) 1005, 1078
RseI CAYNNNNRTG 3 cut(s) 818, 1554, 1826
SacI GAGCTC 1 cut(s) 452
SacII CCGCGG 1 cut(s) 475
SapI GCTCTTC 1 cut(s) 1715
SaqAI TTAA 3 cut(s) 1212, 1322, 1706
Sau96I GGNCC 4 cut(s) 22, 1367, 1498, 1895
ScaI AGTACT 1 cut(s) 1006
SchI GAGTC 4 cut(s) 374, 569, 1541, 1864
ScrFI CCNGG 6 cut(s) 20, 496, 689, 1065, 1404, 1893
SduI GDGCHC 3 cut(s) 452, 1159, 1727
SfaNI GCATC 5 cut(s) 879, 1080, 1381, 1495, 1690
SfoI GGCGCC 1 cut(s) 873
Sfr303I CCGCGG 1 cut(s) 475
SgrBI CCGCGG 1 cut(s) 475
SinI GGWCC 4 cut(s) 22, 1367, 1498, 1895
SmiMI CAYNNNNRTG 3 cut(s) 818, 1554, 1826
SmlI CTYRAG 2 cut(s) 778, 1733
SmoI CTYRAG 2 cut(s) 778, 1733
Sse9I AATT 5 cut(s) 33, 926, 1271, 1715, 1906
SseBI AGGCCT 2 cut(s) 1430, 1887
SspDI GGCGCC 1 cut(s) 871
SspMI CTAG 3 cut(s) 1140, 1377, 1875
SstI GAGCTC 1 cut(s) 452
StuI AGGCCT 2 cut(s) 1430, 1887
StyD4I CCNGG 6 cut(s) 18, 494, 687, 1063, 1402, 1891
TaaI ACNGT 5 cut(s) 73, 322, 349, 1314, 1514
TaiI ACGT 1 cut(s) 1497
TaqI TCGA 5 cut(s) 303, 405, 830, 1437, 1790
TasI AATT 5 cut(s) 33, 926, 1271, 1715, 1906
TatI WGTACW 1 cut(s) 1004
TauI GCSGC 7 cut(s) 8, 128, 413, 474, 572, 668, 761
TfiI GAWTC 6 cut(s) 905, 1180, 1244, 1619, 1843, 1865
Tru1I TTAA 3 cut(s) 1212, 1322, 1706
Tru9I TTAA 3 cut(s) 1212, 1322, 1706
TscAI CASTG 4 cut(s) 352, 1126, 1167, 1206
TseI GCWGC 4 cut(s) 196, 587, 856, 1796
TspGWI ACGGA 1 cut(s) 1683
TspRI CASTG 4 cut(s) 352, 1126, 1167, 1206
VpaK11BI GGWCC 4 cut(s) 22, 1367, 1498, 1895
XagI CCTNNNNNAGG 1 cut(s) 1132
XspI CTAG 3 cut(s) 1140, 1377, 1875
ZrmI AGTACT 1 cut(s) 1006
Zsp2I ATGCAT 2 cut(s) 642, 1689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.