Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012949.1

Orthogroup ID

OG0011479

Physical Location & Seq

Genomic Coordinates Forward (+)

27284 .. 29039

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012949.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

atggcggcacctccagacctggacccttcctcctcctccatattctcccacaaaaactcccgcctcccagacgacaccgttttctacgctatcttccccgactcctccctcacccccacctccaccaccgccgcctcgctccactccctccacctccaaatcctccaaaccctaacccccttcacctccgactacatttggcagcacgagcccttcactctctccccctccgcctcccccaagccctcctgcctctgctccccccacctccctcacctccacggcaagctccgcgtcggcgacaacctcgacgacgagtggttcaccgtcttcctcctcttccacatctcctccaccttccccgacctctccatccgagtctgggactccgacggcgagtttctcctaattgaagccgccttccacctccctcgctggctcaaccctcagaccagctccaaccgcgtcttcattcgccgcggtcaggttcatatcgtcccccggcaccgcctccggaaccctaacctgacagaggcgttgaatttcattgcggcgtttggtgaggagtcggttgcggctcagccggtgcaggctgccgtgaagaaccggatttcggagtatccggagaaggcgaggaggaatatgcatgtggttagggttagggttccgccggcggtggctcaggtgttgagtcaggagccgtgtctggttgcattggcggttgagggcttctatgaccgtgacattgatacaatgaagtacgcggcgaagatggagaggtttctgagcagagggagggaggaggaattggtgtgcatatcggtgaaaatgtcgagggcaatgtatgctcagctggtgcagcagacgtttcaggcgccgaaatgttatccgatgccgaataggagcgattcggcatatgtggaggctgaattgggaatgaagattgcgtgtgggttggagatgatgtatcagcataggagaaaggaggggttggaagggaaagggagtacgtgggaggcctttagggagagtttggagaggagcggttactttgaagggttgcttccgggttcaaaagagtaccagaggttgatgcagaatgcggaggagtattaccggagtagtgcttcgttttcaagggctagtgagatgatgagtgctccagtgaggcgcatagatgagattcttgctttaccttattcggtggatgattttaagcgtgtagatgttccaccttctgatgatgattcttggctttacaatggagaggatgaattgaactctgaacttctagagagacaaaaggagatggaactttatgatttaaaacataagaagaagcagaagtcaaaagagcaggacaatgttggtccatcctccagctctaacactgatgggttcaatcctggtgatatagcaaaaaccatgcaggcctttgtcgaaaaggtgtcaagctacaagggagctgaggttcctgagaacaggttagtgcctatctgttacttatgtttgtgtatcagttcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SGT1

Protein Analysis

509

Amino Acids

57.7

Weight (kDa)

5.84

Isoelectric Point (pI)

62.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65490
fragaria_vesca	FvH4_1g19610
malus_domestica	MD03G1143200.v1.1 MD11G1164000.v1.1
prunus_persica	Prupe.6G202100_v2.0.a1
pyrus_communis	pycom03g09830 pycom11g13550
rosa_chinensis	RchiOBHm_Chr2g0111161
rosa_laevigata	RLG00000017869
rosa_multiflora	Rmu_co8415493.1_g000001 Rmu_sc0003795.1_g000005 Rmu_sc0012949.1_g000006 Rmu_sc0012949.1_g000008
rosa_roxburghii	Rroxscaffold_2G00132670
rosa_rugosa	Rorug02G0171100
rosa_samantha	Rh2AG224100 Rh2BG235800 Rh2CG227200 Rh2DG231800
rosa_wichuraiana	Rw2G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	7, 504, 874
AccBSI	CCGCTC	1 cut(s)	1044
AccII	CGCG	4 cut(s)	294, 465, 480, 764
AccIII	TCCGGA	2 cut(s)	513, 622
AcsI	RAATTY	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	875
AfaI	GTAC	3 cut(s)	761, 1009, 1082
AfiI	CCNNNNNNNGG	4 cut(s)	382, 484, 532, 613
AgsI	TTSAA	7 cut(s)	413, 541, 1055, 1074, 1137, 1279, 1402
AjnI	CCWGG	2 cut(s)	18, 1405
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AloI	GAACNNNNNNTCC	2 cut(s)	1455, 1487
AluBI	AGCT	6 cut(s)	289, 456, 853, 1383, 1455, 1466
AluI	AGCT	6 cut(s)	289, 456, 853, 1383, 1455, 1466
Alw21I	GWGCWC	1 cut(s)	1162
Alw26I	GTCTC	1 cut(s)	1291
Aor13HI	TCCGGA	2 cut(s)	513, 622
AoxI	GGCC	2 cut(s)	1017, 1431
ApeKI	GCWGC	3 cut(s)	202, 593, 859
ApoI	RAATTY	1 cut(s)	541
AspLEI	GCGC	2 cut(s)	877, 1173
AspS9I	GGNCC	2 cut(s)	22, 1370
AsuC2I	CCSGG	2 cut(s)	502, 1068
AsuHPI	GGTGA	7 cut(s)	103, 175, 266, 316, 572, 835, 1421
AvaII	GGWCC	2 cut(s)	22, 1370
BanI	GGYRCC	3 cut(s)	7, 504, 874
BanII	GRGCYC	1 cut(s)	213
BarI	GAAGNNNNNNTAC	1 cut(s)	1507
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	2 cut(s)	322, 460
Bbv12I	GWGCWC	1 cut(s)	1162
BbvCI	CCTCAGC	1 cut(s)	1467
BbvI	GCAGC	3 cut(s)	214, 580, 871
BccI	CCATC	5 cut(s)	380, 766, 1303, 1381, 1388
BceAI	ACGGC	4 cut(s)	298, 409, 581, 685
BciT130I	CCWGG	2 cut(s)	20, 1407
BciVI	GTATCC	1 cut(s)	630
BcnI	CCSGG	2 cut(s)	502, 1068
BcoDI	GTCTC	1 cut(s)	1291
BfaI	CTAG	2 cut(s)	1143, 1292
BfoI	RGCGCY	1 cut(s)	878
BfuI	GTATCC	1 cut(s)	630
BlpI	GCTNAGC	2 cut(s)	579, 849
Bme1390I	CCNGG	4 cut(s)	20, 502, 1068, 1407
Bme18I	GGWCC	2 cut(s)	22, 1370
BmgT120I	GGNCC	2 cut(s)	22, 1370
BmiI	GGNNCC	8 cut(s)	9, 24, 506, 518, 666, 699, 876, 1473
BmrFI	CCNGG	4 cut(s)	20, 502, 1068, 1407
BmsI	GCATC	2 cut(s)	882, 1083
BpiI	GAAGAC	2 cut(s)	322, 460
BpmI	CTGGAG	2 cut(s)	1146, 1363
Bpu10I	CCTNAGC	2 cut(s)	681, 1467
Bpu1102I	GCTNAGC	2 cut(s)	579, 849
BpuMI	CCSGG	2 cut(s)	502, 1068
BsaAI	YACGTR	1 cut(s)	1011
BsaHI	GRCGYC	1 cut(s)	875
BsaJI	CCNNGG	3 cut(s)	280, 478, 500
BsaWI	WCCGGW	4 cut(s)	513, 606, 622, 1116
Bsc4I	CCNNNNNNNGG	4 cut(s)	382, 484, 532, 613
Bse118I	RCCGGY	2 cut(s)	583, 670
Bse1I	ACTGG	1 cut(s)	1163
Bse3DI	GCAATG	2 cut(s)	546, 846
BseAI	TCCGGA	2 cut(s)	513, 622
BseBI	CCWGG	2 cut(s)	20, 1407
BseDI	CCNNGG	3 cut(s)	280, 478, 500
BseGI	GGATG	4 cut(s)	372, 1213, 1276, 1373
BseLI	CCNNNNNNNGG	4 cut(s)	382, 484, 532, 613
BseMI	GCAATG	2 cut(s)	546, 846
BseMII	CTCAG	7 cut(s)	461, 593, 695, 776, 863, 1458, 1467
BseNI	ACTGG	1 cut(s)	1163
BseXI	GCAGC	3 cut(s)	214, 580, 871
BsgI	GTGCAG	2 cut(s)	608, 878
Bsh1236I	CGCG	4 cut(s)	294, 465, 480, 764
BshFI	GGCC	2 cut(s)	1019, 1433
BshNI	GGYRCC	3 cut(s)	7, 504, 874
BsiHKAI	GWGCWC	1 cut(s)	1162
BsiSI	CCGG	8 cut(s)	502, 514, 584, 607, 623, 671, 1067, 1117
BslFI	GGGAC	2 cut(s)	398, 482
BslI	CCNNNNNNNGG	4 cut(s)	382, 484, 532, 613
BsmAI	GTCTC	1 cut(s)	1291
BsmFI	GGGAC	2 cut(s)	398, 482
BsmI	GAATGC	1 cut(s)	1105
BsnI	GGCC	2 cut(s)	1019, 1433
Bsp1286I	GDGCHC	2 cut(s)	213, 1162
Bsp13I	TCCGGA	2 cut(s)	513, 622
Bsp1720I	GCTNAGC	2 cut(s)	579, 849
BspANI	GGCC	2 cut(s)	1019, 1433
BspCNI	CTCAG	7 cut(s)	460, 592, 694, 777, 862, 1459, 1468
BspEI	TCCGGA	2 cut(s)	513, 622
BspFNI	CGCG	4 cut(s)	294, 465, 480, 764
BspHI	TCATGA	1 cut(s)	1526
BspLI	GGNNCC	8 cut(s)	9, 24, 506, 518, 666, 699, 876, 1473
BspT107I	GGYRCC	3 cut(s)	7, 504, 874
BsrBI	CCGCTC	1 cut(s)	1044
BsrDI	GCAATG	2 cut(s)	546, 846
BsrFI	RCCGGY	2 cut(s)	583, 670
BsrI	ACTGG	1 cut(s)	1163
BssAI	RCCGGY	2 cut(s)	583, 670
BssECI	CCNNGG	3 cut(s)	280, 478, 500
BssNI	GRCGYC	1 cut(s)	875
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	20, 1407
Bst4CI	ACNGT	3 cut(s)	79, 328, 740
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	875
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstBAI	YACGTR	1 cut(s)	1011
BstC8I	GCNNGC	5 cut(s)	287, 437, 591, 672, 1431
BstDEI	CTNAG	7 cut(s)	447, 579, 681, 785, 849, 1467, 1476
BstDSI	CCRYGG	2 cut(s)	280, 478
BstENI	CCTNNNNNAGG	1 cut(s)	530
BstF5I	GGATG	4 cut(s)	372, 1213, 1276, 1373
BstFNI	CGCG	4 cut(s)	294, 465, 480, 764
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	2 cut(s)	877, 1173
BstMAI	GTCTC	1 cut(s)	1291
BstMWI	GCNNNNNNNGC	5 cut(s)	208, 291, 462, 845, 859
BstNI	CCWGG	2 cut(s)	20, 1407
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	4 cut(s)	18, 500, 1066, 1405
BstUI	CGCG	4 cut(s)	294, 465, 480, 764
BstV1I	GCAGC	3 cut(s)	214, 580, 871
BstV2I	GAAGAC	2 cut(s)	322, 460
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	1019, 1433
BtgI	CCRYGG	2 cut(s)	280, 478
BtsCI	GGATG	4 cut(s)	372, 1213, 1276, 1373
BtsIMutI	CAGTG	2 cut(s)	1170, 1389
Cac8I	GCNNGC	5 cut(s)	287, 437, 591, 672, 1431
CciI	TCATGA	1 cut(s)	1526
CfoI	GCGC	2 cut(s)	877, 1173
Cfr10I	RCCGGY	2 cut(s)	583, 670
Cfr13I	GGNCC	2 cut(s)	22, 1370
Cfr42I	CCGCGG	1 cut(s)	481
CseI	GACGC	2 cut(s)	283, 454
Csp6I	GTAC	3 cut(s)	760, 1008, 1081
CviAII	CATG	3 cut(s)	647, 1426, 1527
CviQI	GTAC	3 cut(s)	760, 1008, 1081
DdeI	CTNAG	7 cut(s)	447, 579, 681, 785, 849, 1467, 1476
DinI	GGCGCC	1 cut(s)	876
DraI	TTTAAA	1 cut(s)	1326
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
EciI	GGCGGA	2 cut(s)	220, 657
Eco147I	AGGCCT	2 cut(s)	1019, 1433
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	22, 1370
EcoNI	CCTNNNNNAGG	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	18, 1405
EcoT22I	ATGCAT	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	213
EgeI	GGCGCC	1 cut(s)	876
EheI	GGCGCC	1 cut(s)	876
FaeI	CATG	3 cut(s)	650, 1429, 1530
FalI	AAGNNNNNCTT	2 cut(s)	1047, 1079
FaqI	GGGAC	2 cut(s)	398, 482
FatI	CATG	3 cut(s)	646, 1425, 1526
FauI	CCCGC	1 cut(s)	68
FauNDI	CATATG	1 cut(s)	916
FokI	GGATG	4 cut(s)	359, 1220, 1283, 1360
FriOI	GRGCYC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	1143, 1292
GlaI	GCGC	2 cut(s)	876, 1172
GsuI	CTGGAG	2 cut(s)	1146, 1363
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	2 cut(s)	1019, 1433
HapII	CCGG	8 cut(s)	502, 514, 584, 607, 623, 671, 1067, 1117
HgaI	GACGC	2 cut(s)	283, 454
HhaI	GCGC	2 cut(s)	877, 1173
Hin1I	GRCGYC	1 cut(s)	875
Hin1II	CATG	3 cut(s)	650, 1429, 1530
Hin6I	GCGC	2 cut(s)	875, 1171
HinP1I	GCGC	2 cut(s)	875, 1171
HinfI	GANTC	8 cut(s)	101, 378, 386, 566, 691, 908, 1183, 1247
HpaII	CCGG	8 cut(s)	502, 514, 584, 607, 623, 671, 1067, 1117
HphI	GGTGA	7 cut(s)	103, 175, 266, 316, 572, 835, 1421
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	9 cut(s)	190, 377, 391, 450, 616, 786, 891, 1240, 1285
Hpy188III	TCNNGA	7 cut(s)	14, 514, 623, 695, 1292, 1475, 1527
Hpy8I	GTNNAC	1 cut(s)	324
Hpy99I	CGWCG	4 cut(s)	299, 314, 317, 395
HpyAV	CCTTC	9 cut(s)	36, 190, 223, 367, 430, 622, 989, 1049, 1245
HpyCH4III	ACNGT	3 cut(s)	79, 328, 740
HpyCH4IV	ACGT	2 cut(s)	866, 1010
HpyCH4V	TGCA	7 cut(s)	589, 646, 713, 816, 859, 1096, 1429
HpyF10VI	GCNNNNNNNGC	5 cut(s)	208, 291, 462, 845, 859
HpyF3I	CTNAG	7 cut(s)	447, 579, 681, 785, 849, 1467, 1476
HpySE526I	ACGT	2 cut(s)	866, 1010
Hsp92I	GRCGYC	1 cut(s)	875
Hsp92II	CATG	3 cut(s)	650, 1429, 1530
HspAI	GCGC	2 cut(s)	875, 1171
KasI	GGCGCC	1 cut(s)	874
Kpn2I	TCCGGA	2 cut(s)	513, 622
KroI	GCCGGC	1 cut(s)	670
KroNI	GCCGGC	1 cut(s)	672
KspI	CCGCGG	1 cut(s)	481
LmnI	GCTCC	9 cut(s)	144, 263, 294, 461, 697, 903, 1041, 1165, 1463
Lsp1109I	GCAGC	3 cut(s)	214, 580, 871
LweI	GCATC	2 cut(s)	882, 1083
MaeI	CTAG	2 cut(s)	1143, 1292
MaeII	ACGT	2 cut(s)	866, 1010
MaeIII	GTNAC	3 cut(s)	740, 1046, 1499
MbiI	CCGCTC	1 cut(s)	1044
MboII	GAAGA	9 cut(s)	85, 322, 331, 460, 613, 781, 952, 1348, 1515
MhlI	GDGCHC	2 cut(s)	213, 1162
MluCI	AATT	5 cut(s)	408, 541, 806, 929, 1274
Mly113I	GGCGCC	1 cut(s)	875
MlyI	GAGTC	5 cut(s)	95, 380, 387, 575, 700
MmeI	TCCRAC	5 cut(s)	213, 414, 483, 936, 972
Mph1103I	ATGCAT	1 cut(s)	648
MreI	CGCCGGCG	1 cut(s)	670
MroI	TCCGGA	2 cut(s)	513, 622
MroNI	GCCGGC	1 cut(s)	670
MseI	TTAA	2 cut(s)	1215, 1325
MslI	CAYNNNNRTG	1 cut(s)	821
MspA1I	CMGCKG	2 cut(s)	480, 853
MspI	CCGG	8 cut(s)	502, 514, 584, 607, 623, 671, 1067, 1117
MspR9I	CCNGG	4 cut(s)	20, 502, 1068, 1407
Mva1269I	GAATGC	1 cut(s)	1105
MvaI	CCWGG	2 cut(s)	20, 1407
MvnI	CGCG	4 cut(s)	294, 465, 480, 764
MwoI	GCNNNNNNNGC	5 cut(s)	208, 291, 462, 845, 859
NaeI	GCCGGC	1 cut(s)	672
NarI	GGCGCC	1 cut(s)	875
NciI	CCSGG	2 cut(s)	502, 1068
NdeI	CATATG	1 cut(s)	916
NgoMIV	GCCGGC	1 cut(s)	670
NlaIII	CATG	3 cut(s)	650, 1429, 1530
NlaIV	GGNNCC	8 cut(s)	9, 24, 506, 518, 666, 699, 876, 1473
NmuCI	GTSAC	1 cut(s)	740
NsiI	ATGCAT	1 cut(s)	648
NspI	RCATGY	1 cut(s)	650
PagI	TCATGA	1 cut(s)	1526
PceI	AGGCCT	2 cut(s)	1019, 1433
PctI	GAATGC	1 cut(s)	1105
PdiI	GCCGGC	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	908, 1183, 1247
PleI	GAGTC	5 cut(s)	95, 380, 386, 574, 699
PluTI	GGCGCC	1 cut(s)	878
PpsI	GAGTC	5 cut(s)	95, 380, 386, 574, 699
Ppu21I	YACGTR	1 cut(s)	1011
Psp6I	CCWGG	2 cut(s)	18, 1405
PspGI	CCWGG	2 cut(s)	18, 1405
PspN4I	GGNNCC	8 cut(s)	9, 24, 506, 518, 666, 699, 876, 1473
PspPI	GGNCC	2 cut(s)	22, 1370
PvuII	CAGCTG	1 cut(s)	853
RsaI	GTAC	3 cut(s)	761, 1009, 1082
RsaNI	GTAC	3 cut(s)	760, 1008, 1081
RseI	CAYNNNNRTG	1 cut(s)	821
SacII	CCGCGG	1 cut(s)	481
SaqAI	TTAA	2 cut(s)	1215, 1325
Sau96I	GGNCC	2 cut(s)	22, 1370
SchI	GAGTC	5 cut(s)	95, 380, 387, 575, 700
ScrFI	CCNGG	4 cut(s)	20, 502, 1068, 1407
SduI	GDGCHC	2 cut(s)	213, 1162
SfaNI	GCATC	2 cut(s)	882, 1083
SfoI	GGCGCC	1 cut(s)	876
Sfr303I	CCGCGG	1 cut(s)	481
SgrAI	CRCCGGYG	1 cut(s)	670
SgrBI	CCGCGG	1 cut(s)	481
SinI	GGWCC	2 cut(s)	22, 1370
SmiMI	CAYNNNNRTG	1 cut(s)	821
Sse9I	AATT	5 cut(s)	408, 541, 806, 929, 1274
SseBI	AGGCCT	2 cut(s)	1019, 1433
SspDI	GGCGCC	1 cut(s)	874
SspMI	CTAG	2 cut(s)	1143, 1292
StuI	AGGCCT	2 cut(s)	1019, 1433
StyD4I	CCNGG	4 cut(s)	18, 500, 1066, 1405
TaaI	ACNGT	3 cut(s)	79, 328, 740
TaiI	ACGT	2 cut(s)	869, 1013
TaqI	TCGA	3 cut(s)	309, 833, 1440
TasI	AATT	5 cut(s)	408, 541, 806, 929, 1274
TauI	GCSGC	7 cut(s)	8, 134, 419, 480, 554, 578, 767
TfiI	GAWTC	3 cut(s)	908, 1183, 1247
Tru1I	TTAA	2 cut(s)	1215, 1325
Tru9I	TTAA	2 cut(s)	1215, 1325
TscAI	CASTG	2 cut(s)	1170, 1396
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	3 cut(s)	202, 593, 859
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	7 cut(s)	460, 479, 535, 770, 953, 1287, 1515
TspRI	CASTG	2 cut(s)	1170, 1396
VpaK11BI	GGWCC	2 cut(s)	22, 1370
XagI	CCTNNNNNAGG	1 cut(s)	530
XapI	RAATTY	1 cut(s)	541
XbaI	TCTAGA	1 cut(s)	1291
XceI	RCATGY	1 cut(s)	650
XspI	CTAG	2 cut(s)	1143, 1292
Zsp2I	ATGCAT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.