Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8415493.1

Orthogroup ID

OG0011479

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1314

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8415493.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 842 bp

atgcatgtggttagggttagggttccgccggcggtggctcaggtgttgagtcaggagccgtgtctggttgcattggcggttgagggcttctatgaccgtgacattgatacaatgaagtacgcggcgaagatggagaggtttctgagcagagggagggaggaggaattggtgtgcatatcggtgaaaatgtcgagggcaatgtatgctcagctggtgcagcagacgtttcaggcgccgaaatgttatccgatgccgaataggagcgattcggcatatgtggaggctgatttgggaatgaagattgcgtgtgggttggagatgatgtatcagcataggagaaaggaggggttggaagggaaagggagtacgtgggaggcctttagggagagtttggagaggagcggttactttgaagggttgcttccgggttcaaaagagtaccagaggttgatgcagaatgcggaggagtattaccggagtagtgcttcgttttcaagggctagtgagatgatgagtgctccagtgaggcgcatagatgagattcttgctttaccttattcggtggatgattttaagcgtgtagatgttccaccttctgatgatgattcttggctttacaatggagaggatgaattgaactctgaacttctagagagacaaaaggagatggaactttatgatttaaaacataagaagaagcagaagtcaaaagagcaggacaatgttggtccatcctccagctctaacactgatgggttcaatcctggtgatatagcaaaaaccatgcaggcctttgtcgaaaaggtgtcaagctacaagggagctgaggttcctgagaacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SGT1

Protein Analysis

280

Amino Acids

31.94

Weight (kDa)

5.21

Isoelectric Point (pI)

59.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65490
fragaria_vesca	FvH4_1g19610
malus_domestica	MD03G1143200.v1.1 MD11G1164000.v1.1
prunus_persica	Prupe.6G202100_v2.0.a1
pyrus_communis	pycom03g09830 pycom11g13550
rosa_chinensis	RchiOBHm_Chr2g0111161
rosa_laevigata	RLG00000017869
rosa_multiflora	Rmu_co8415493.1_g000001 Rmu_sc0003795.1_g000005 Rmu_sc0012949.1_g000006 Rmu_sc0012949.1_g000008
rosa_roxburghii	Rroxscaffold_2G00132670
rosa_rugosa	Rorug02G0171100
rosa_samantha	Rh2AG224100 Rh2BG235800 Rh2CG227200 Rh2DG231800
rosa_wichuraiana	Rw2G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	402
AccII	CGCG	1 cut(s)	122
AciI	CCGC	6 cut(s)	26, 32, 77, 122, 402, 461
AcyI	GRCGYC	1 cut(s)	233
AfaI	GTAC	3 cut(s)	119, 367, 440
AgsI	TTSAA	5 cut(s)	413, 432, 495, 637, 760
AjnI	CCWGG	1 cut(s)	763
AloI	GAACNNNNNNTCC	1 cut(s)	813
AluBI	AGCT	4 cut(s)	211, 741, 813, 824
AluI	AGCT	4 cut(s)	211, 741, 813, 824
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	1 cut(s)	649
AoxI	GGCC	2 cut(s)	375, 789
ApeKI	GCWGC	1 cut(s)	217
AspLEI	GCGC	2 cut(s)	235, 531
AspS9I	GGNCC	1 cut(s)	728
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	193, 779
AvaII	GGWCC	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	520
BbvCI	CCTCAGC	1 cut(s)	825
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	4 cut(s)	124, 661, 739, 746
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	765
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	2 cut(s)	501, 650
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	2 cut(s)	123, 218
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	2 cut(s)	124, 219
Bme1390I	CCNGG	2 cut(s)	426, 765
Bme18I	GGWCC	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	4 cut(s)	24, 57, 234, 831
BmrFI	CCNGG	2 cut(s)	426, 765
BmsI	GCATC	2 cut(s)	240, 441
BpmI	CTGGAG	2 cut(s)	504, 721
Bpu10I	CCTNAGC	2 cut(s)	39, 825
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	474
BsaXI	ACNNNNNCTCC	3 cut(s)	308, 338, 813
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	765
BseGI	GGATG	3 cut(s)	571, 634, 731
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	5 cut(s)	53, 134, 221, 816, 825
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	3 cut(s)	173, 412, 479
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	377, 791
BshNI	GGYRCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	3 cut(s)	29, 425, 475
BsmAI	GTCTC	1 cut(s)	649
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	377, 791
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	6 cut(s)	26, 32, 77, 122, 402, 461
BspANI	GGCC	2 cut(s)	377, 791
BspCNI	CTCAG	5 cut(s)	52, 135, 220, 817, 826
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	4 cut(s)	24, 57, 234, 831
BspT107I	GGYRCC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	30, 789
BstDEI	CTNAG	5 cut(s)	39, 143, 207, 825, 834
BstF5I	GGATG	3 cut(s)	571, 634, 731
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	2 cut(s)	235, 531
BstMAI	GTCTC	1 cut(s)	649
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 217
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	424, 763
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	377, 791
BtsCI	GGATG	3 cut(s)	571, 634, 731
BtsIMutI	CAGTG	2 cut(s)	528, 747
Cac8I	GCNNGC	2 cut(s)	30, 789
CfoI	GCGC	2 cut(s)	235, 531
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	728
Csp6I	GTAC	3 cut(s)	118, 366, 439
CviAII	CATG	2 cut(s)	5, 784
CviQI	GTAC	3 cut(s)	118, 366, 439
DdeI	CTNAG	5 cut(s)	39, 143, 207, 825, 834
DinI	GGCGCC	1 cut(s)	234
DraI	TTTAAA	1 cut(s)	684
EciI	GGCGGA	1 cut(s)	15
Eco147I	AGGCCT	2 cut(s)	377, 791
Eco47I	GGWCC	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	763
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	234
EheI	GGCGCC	1 cut(s)	234
FaeI	CATG	2 cut(s)	8, 787
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	2 cut(s)	4, 783
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	123, 218
FokI	GGATG	3 cut(s)	578, 641, 718
Fsp4HI	GCNGC	2 cut(s)	123, 218
FspBI	CTAG	2 cut(s)	501, 650
GlaI	GCGC	2 cut(s)	234, 530
GluI	GCNGC	2 cut(s)	123, 218
GsuI	CTGGAG	2 cut(s)	504, 721
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	377, 791
HapII	CCGG	3 cut(s)	29, 425, 475
HhaI	GCGC	2 cut(s)	235, 531
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	8, 787
Hin6I	GCGC	2 cut(s)	233, 529
HinP1I	GCGC	2 cut(s)	233, 529
HinfI	GANTC	4 cut(s)	49, 266, 541, 605
HpaII	CCGG	3 cut(s)	29, 425, 475
HphI	GGTGA	2 cut(s)	193, 779
Hpy188I	TCNGA	4 cut(s)	144, 249, 598, 643
Hpy188III	TCNNGA	3 cut(s)	53, 650, 833
HpyAV	CCTTC	3 cut(s)	347, 407, 603
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	2 cut(s)	224, 368
HpyCH4V	TGCA	6 cut(s)	4, 71, 174, 217, 454, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 217
HpyF3I	CTNAG	5 cut(s)	39, 143, 207, 825, 834
HpySE526I	ACGT	2 cut(s)	224, 368
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	8, 787
HspAI	GCGC	2 cut(s)	233, 529
KasI	GGCGCC	1 cut(s)	232
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
LmnI	GCTCC	5 cut(s)	55, 261, 399, 523, 821
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	240, 441
MaeI	CTAG	2 cut(s)	501, 650
MaeII	ACGT	2 cut(s)	224, 368
MaeIII	GTNAC	2 cut(s)	98, 404
MbiI	CCGCTC	1 cut(s)	402
MboII	GAAGA	3 cut(s)	139, 310, 706
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	2 cut(s)	164, 632
Mly113I	GGCGCC	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	2 cut(s)	294, 330
Mph1103I	ATGCAT	1 cut(s)	6
MreI	CGCCGGCG	1 cut(s)	28
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	2 cut(s)	573, 683
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	3 cut(s)	29, 425, 475
MspR9I	CCNGG	2 cut(s)	426, 765
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	765
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	203, 217
NaeI	GCCGGC	1 cut(s)	30
NarI	GGCGCC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	426
NdeI	CATATG	1 cut(s)	274
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	8, 787
NlaIV	GGNNCC	4 cut(s)	24, 57, 234, 831
NmuCI	GTSAC	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PceI	AGGCCT	2 cut(s)	377, 791
PctI	GAATGC	1 cut(s)	463
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	266, 541, 605
PkrI	GCNGC	2 cut(s)	124, 219
PleI	GAGTC	1 cut(s)	57
PluTI	GGCGCC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	4 cut(s)	24, 57, 234, 831
PspPI	GGNCC	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	211
RsaI	GTAC	3 cut(s)	119, 367, 440
RsaNI	GTAC	3 cut(s)	118, 366, 439
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	573, 683
SatI	GCNGC	2 cut(s)	123, 218
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	2 cut(s)	426, 765
SduI	GDGCHC	1 cut(s)	520
SfaNI	GCATC	2 cut(s)	240, 441
SfoI	GGCGCC	1 cut(s)	234
SgrAI	CRCCGGYG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	164, 632
SseBI	AGGCCT	2 cut(s)	377, 791
SsiI	CCGC	6 cut(s)	26, 32, 77, 122, 402, 461
SspDI	GGCGCC	1 cut(s)	232
SspMI	CTAG	2 cut(s)	501, 650
StuI	AGGCCT	2 cut(s)	377, 791
StyD4I	CCNGG	2 cut(s)	424, 763
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	2 cut(s)	227, 371
TaqI	TCGA	2 cut(s)	191, 798
TasI	AATT	2 cut(s)	164, 632
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	3 cut(s)	266, 541, 605
Tru1I	TTAA	2 cut(s)	573, 683
Tru9I	TTAA	2 cut(s)	573, 683
TscAI	CASTG	2 cut(s)	528, 754
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	128, 311, 645
TspRI	CASTG	2 cut(s)	528, 754
VpaK11BI	GGWCC	1 cut(s)	728
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	2 cut(s)	501, 650
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.