Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012949.1

Orthogroup ID

OG0011479

Physical Location & Seq

Genomic Coordinates Forward (+)

24552 .. 25154

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012949.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggcggcacctctagacctggacccttcctcctcctcctcctccatattctaccacaaaaactcccgcctcccagatgacaccgttttctatgccatcttcccggactcctccctcaccttcacctccacctccacctccgccgccttgctccactccctccacctccaaatcctccaaaccctaacccctttcacctccgactacatttggcagcacgagcccttcactctctccccctccgcctcccccaagccttcctgcctctgctccccccacctccctcacctccacggcaagctccacgtcggcgacaacctcgacgacgagtggttcaccgtcttcctcctcttccacatctcctccaccttcccggacctctccatccgagtctgggactccgacggcgagtttctcctaattgaagccgcctttcacctccctcactggctcaaccctcagaccagctccaactgcgacttcattcgccgaggtcaggttcatatcgtcccccggcacagcctccagaaccctaacctgacagaggcgttgaatttcattgcgacgtttggtgaggagtcagttgcggctgagccggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SGT1

Protein Analysis

200

Amino Acids

22.37

Weight (kDa)

5.23

Isoelectric Point (pI)

66.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65490
fragaria_vesca	FvH4_1g19610
malus_domestica	MD03G1143200.v1.1 MD11G1164000.v1.1
prunus_persica	Prupe.6G202100_v2.0.a1
pyrus_communis	pycom03g09830 pycom11g13550
rosa_chinensis	RchiOBHm_Chr2g0111161
rosa_laevigata	RLG00000017869
rosa_multiflora	Rmu_co8415493.1_g000001 Rmu_sc0003795.1_g000005 Rmu_sc0012949.1_g000006 Rmu_sc0012949.1_g000008
rosa_roxburghii	Rroxscaffold_2G00132670
rosa_rugosa	Rorug02G0171100
rosa_samantha	Rh2AG224100 Rh2BG235800 Rh2CG227200 Rh2DG231800
rosa_wichuraiana	Rw2G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AciI	CCGC	7 cut(s)	5, 67, 141, 144, 243, 429, 587
AcsI	RAATTY	1 cut(s)	553
AfiI	CCNNNNNNNGG	3 cut(s)	394, 496, 544
AgsI	TTSAA	2 cut(s)	425, 553
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AluBI	AGCT	2 cut(s)	301, 468
AluI	AGCT	2 cut(s)	301, 468
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	553
AspS9I	GGNCC	2 cut(s)	22, 376
AsuC2I	CCSGG	3 cut(s)	104, 374, 514
AsuHPI	GGTGA	7 cut(s)	109, 115, 187, 278, 328, 428, 584
AvaII	GGWCC	2 cut(s)	22, 376
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	2 cut(s)	104, 392
BceAI	ACGGC	2 cut(s)	310, 421
BciT130I	CCWGG	1 cut(s)	20
BcnI	CCSGG	3 cut(s)	104, 374, 514
BfaI	CTAG	1 cut(s)	14
BisI	GCNGC	5 cut(s)	6, 144, 215, 429, 588
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	5 cut(s)	7, 145, 216, 430, 589
Bme1390I	CCNGG	4 cut(s)	20, 104, 374, 514
Bme18I	GGWCC	2 cut(s)	22, 376
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	22, 376
BmiI	GGNNCC	2 cut(s)	9, 24
BmrFI	CCNGG	4 cut(s)	20, 104, 374, 514
BpiI	GAAGAC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	509
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuMI	CCSGG	3 cut(s)	104, 374, 514
BsaJI	CCNNGG	3 cut(s)	292, 490, 512
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 47, 77, 347, 377
Bsc4I	CCNNNNNNNGG	3 cut(s)	394, 496, 544
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	1 cut(s)	452
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	292, 490, 512
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	394, 496, 544
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	473, 582
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	8 cut(s)	22, 25, 28, 31, 100, 338, 352, 590
BseXI	GCAGC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	7
BsiSI	CCGG	4 cut(s)	104, 374, 514, 596
BslFI	GGGAC	2 cut(s)	410, 494
BslI	CCNNNNNNNGG	3 cut(s)	394, 496, 544
BsmFI	GGGAC	2 cut(s)	410, 494
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp1720I	GCTNAGC	1 cut(s)	591
BspACI	CCGC	7 cut(s)	5, 67, 141, 144, 243, 429, 587
BspCNI	CTCAG	2 cut(s)	472, 583
BspLI	GGNNCC	2 cut(s)	9, 24
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	3 cut(s)	292, 490, 512
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	85, 340
Bst6I	CTCTTC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	459, 591
BstDSI	CCRYGG	1 cut(s)	292
BstENI	CCTNNNNNAGG	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 474
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	4 cut(s)	18, 102, 372, 512
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	595
Cfr13I	GGNCC	2 cut(s)	22, 376
CviJI	RGCY	9 cut(s)	223, 256, 301, 428, 451, 468, 522, 590, 595
CviKI_1	RGCY	9 cut(s)	223, 256, 301, 428, 451, 468, 522, 590, 595
DdeI	CTNAG	2 cut(s)	459, 591
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EciI	GGCGGA	2 cut(s)	130, 232
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	22, 376
EcoNI	CCTNNNNNAGG	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	225
FaiI	YATR	3 cut(s)	47, 93, 504
FaqI	GGGAC	2 cut(s)	410, 494
FauI	CCCGC	1 cut(s)	74
Fnu4HI	GCNGC	5 cut(s)	6, 144, 215, 429, 588
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	5 cut(s)	6, 144, 215, 429, 588
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	5 cut(s)	6, 144, 215, 429, 588
GsuI	CTGGAG	1 cut(s)	509
HapII	CCGG	4 cut(s)	104, 374, 514, 596
HinfI	GANTC	4 cut(s)	107, 390, 398, 578
HpaII	CCGG	4 cut(s)	104, 374, 514, 596
HphI	GGTGA	7 cut(s)	109, 115, 187, 278, 328, 428, 584
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	4 cut(s)	202, 389, 403, 462
Hpy188III	TCNNGA	2 cut(s)	14, 526
Hpy8I	GTNNAC	1 cut(s)	336
Hpy99I	CGWCG	5 cut(s)	311, 326, 329, 407, 568
HpyAV	CCTTC	5 cut(s)	36, 130, 235, 267, 379
HpyCH4III	ACNGT	2 cut(s)	85, 340
HpyCH4IV	ACGT	2 cut(s)	306, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 474
HpyF3I	CTNAG	2 cut(s)	459, 591
HpySE526I	ACGT	2 cut(s)	306, 566
LmnI	GCTCC	4 cut(s)	156, 275, 306, 473
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	2 cut(s)	306, 566
MboII	GAAGA	3 cut(s)	91, 334, 343
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	2 cut(s)	420, 553
MlyI	GAGTC	4 cut(s)	101, 392, 399, 587
MmeI	TCCRAC	3 cut(s)	225, 426, 495
MspI	CCGG	4 cut(s)	104, 374, 514, 596
MspR9I	CCNGG	4 cut(s)	20, 104, 374, 514
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	220, 474
NciI	CCSGG	3 cut(s)	104, 374, 514
NlaIV	GGNNCC	2 cut(s)	9, 24
NmeAIII	GCCGAG	1 cut(s)	515
PfoI	TCCNGGA	2 cut(s)	102, 372
PkrI	GCNGC	5 cut(s)	7, 145, 216, 430, 589
PleI	GAGTC	4 cut(s)	101, 392, 398, 586
PpsI	GAGTC	4 cut(s)	101, 392, 398, 586
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	9, 24
PspPI	GGNCC	2 cut(s)	22, 376
SatI	GCNGC	5 cut(s)	6, 144, 215, 429, 588
Sau96I	GGNCC	2 cut(s)	22, 376
SchI	GAGTC	4 cut(s)	101, 392, 399, 587
ScrFI	CCNGG	4 cut(s)	20, 104, 374, 514
SduI	GDGCHC	1 cut(s)	225
SinI	GGWCC	2 cut(s)	22, 376
Sse9I	AATT	2 cut(s)	420, 553
SsiI	CCGC	7 cut(s)	5, 67, 141, 144, 243, 429, 587
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	4 cut(s)	18, 102, 372, 512
TaaI	ACNGT	2 cut(s)	85, 340
TaiI	ACGT	2 cut(s)	309, 569
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	420, 553
TauI	GCSGC	4 cut(s)	8, 146, 431, 590
TscAI	CASTG	1 cut(s)	452
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	472, 491, 547
TspRI	CASTG	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	22, 376
XagI	CCTNNNNNAGG	1 cut(s)	542
XapI	RAATTY	1 cut(s)	553
XbaI	TCTAGA	1 cut(s)	13
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.