Rw2G017300

Protein SGT1 homolog At5g65490-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
21297963 .. 21301981
4019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017300.1

Sequence Viewer

Length: 1569 bp
ATGGCGGCACCTCCAGACCTGGACCCTTCCTCCTCCTCCATATTCTCCCACAAAAACTCCCGCCTCCCAGACGACACCGTTTTCTACGCCATCTTCCCGGACTCCTCCCTCACCCCCACCTCCACCACCGCCGCCTCGCTCCACTCCCTCCACCTCCAAATCCTCCAAACCCTAACCCCCTTCACCTCCGACTACATTTGGCAGCACGAGCCCTTCACTCTCTCTCCCTCCCTCCGCGTCGGCGACAACCTCGACGACGAGTGGTTCACCGTCTTCCTCCTCTTCCACATCTCCTCCACCTTCCCGGACCTCTCCATCCGAGTCTGGGACTCCGACGGCGAGTTTCTCCTAATTGAAGCCGCCTTTCACCTCCCTCGCTGGCTCAACCCTCAGACCAGCTCCAACCGCGTCTTCATTCGCCGCGGTCAGGTTCATATCGTCCCCCGGCACCGCCTCCGGAACCCTAACCTAACAGAGGCGTTGAATTTCATTGCGGCGTTTGGTGAGGAGTCGGTTGCGGCTCAGCCGGTGCAGGCTGCCGTGAAGAACCGGATTTCGGAGTATCCGGAGAAGGCGAGGAGGAATATGCATGTGGTTAGGGTTAGGGTTCCGCCGGCGGTGGCTCAGGTGTTGAGTCAGGAGCCGTGTCTGGTTGCATTGGCGGTTGAGGGCTTCTATGACCGTGACATTGATACAATGAAGTACGCGGCGAAGATGGAGAGGTTTCTGAGCAGAGGGAGGGAGGAGGAATTGGTGTGCATATCGGTGAAAATGTCGAGGGCAATGTATGCTCAGCTGGTGCAGCAGACGTTTCAGGCGCCGAAATGTTATCCGATGCCGAATAGGAGCGATTCGGCATATGTGGAGGCTGAATTGGGAATGAAGATTGCGTGTGGGTTGGAGATGATGTATCAGCATAGGAGAAAGGAGGGGTTGGAAGGGAAAGGGAGTACGTGGGAGGCCTTTAGGGAGAGTTTGGAGAGGAGCGGTTACTTTGAAGGGTTGCTTCCGGGTTCAAAAGAGTACCAGAGGTTGATGCAGAATGCGGAGGAGTATTACCGGAGTAGTGCTTCGTTTTCAAGGGCTAGGAACCTAAAAGAGGTGGACCTTGATGTGGACCGTTTCTTTAAGGATGTAGAATCAATTATGAAAAGCCATGGTGGTGAAGAAGCTACTAGTGATGATGATATTGAAGAAGGGTCTTCATCCGACTTGGATTTCGATGATTCAGAAGATGAAATTGACAGCGCAGAACTTTCTGAAGATATTGAGAATGGAGAGGATACTTTCATGCATTCTTACTCTGATGCTTTAAATGAAGAATTGAAGAGTACTACACTTGAGAAGAGTTTTGTGCGTGCTAATGAACAAGCCCCAAAGAAAGATGAGGGAACGTCTAATGCTACGGAAGATATGGATGAGGATTTTACTCCTGTGGATGTGGATGTGAATCTGGTAAAGAGCCTTCTTGATTCCTTCTCTAGCCAACAAGGCCTTCCTGGTCCTGCTTCCAATTTGCTCGGCCTCATGGGTTTACAACTCCCACAAGACGACAAAAAGGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

522

Amino Acids

58.87

Weight (kDa)

4.74

Isoelectric Point (pI)

59.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGT1 PF07093 27 - 360 5.3e-133 SGT1 protein
SGT1 PF07093 361 - 482 4.2e-19 SGT1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 7, 447, 817
AccBSI CCGCTC 1 cut(s) 987
AccII CGCG 4 cut(s) 237, 408, 423, 707
AccIII TCCGGA 2 cut(s) 456, 565
AcsI RAATTY 1 cut(s) 484
AcuI CTGAAG 1 cut(s) 1281
AcyI GRCGYC 1 cut(s) 818
AfaI GTAC 4 cut(s) 704, 952, 1025, 1333
AfiI CCNNNNNNNGG 6 cut(s) 325, 427, 475, 556, 1099, 1114
AgsI TTSAA 7 cut(s) 356, 484, 998, 1017, 1080, 1193, 1327
AhlI ACTAGT 1 cut(s) 1175
AjnI CCWGG 2 cut(s) 18, 1498
AjuI GAANNNNNNNTTGG 4 cut(s) 395, 427, 1479, 1511
AluBI AGCT 3 cut(s) 399, 796, 1172
AluI AGCT 3 cut(s) 399, 796, 1172
Aor13HI TCCGGA 2 cut(s) 456, 565
AoxI GGCC 3 cut(s) 960, 1492, 1522
ApeKI GCWGC 3 cut(s) 202, 536, 802
ApoI RAATTY 1 cut(s) 484
ArsI GACNNNNNNTTYG 2 cut(s) 1202, 1234
AspLEI GCGC 2 cut(s) 820, 1250
AspS9I GGNCC 5 cut(s) 22, 307, 1105, 1117, 1502
AsuC2I CCSGG 4 cut(s) 98, 305, 445, 1011
AsuHPI GGTGA 7 cut(s) 103, 175, 259, 359, 515, 778, 1175
AvaII GGWCC 5 cut(s) 22, 307, 1105, 1117, 1502
BanI GGYRCC 3 cut(s) 7, 447, 817
BanII GRGCYC 1 cut(s) 213
BarI GAAGNNNNNNTAC 2 cut(s) 1449, 1481
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 3 cut(s) 265, 403, 1194
BbvI GCAGC 3 cut(s) 214, 523, 814
BccI CCATC 3 cut(s) 98, 323, 709
BceAI ACGGC 3 cut(s) 352, 524, 628
BciT130I CCWGG 2 cut(s) 20, 1500
BciVI GTATCC 2 cut(s) 573, 1276
BcnI CCSGG 4 cut(s) 98, 305, 445, 1011
BcuI ACTAGT 1 cut(s) 1175
BfaI CTAG 3 cut(s) 1086, 1176, 1482
BfoI RGCGCY 1 cut(s) 821
BfuI GTATCC 2 cut(s) 573, 1276
BglI GCCNNNNNGGC 1 cut(s) 1491
BlpI GCTNAGC 2 cut(s) 522, 792
BmcAI AGTACT 1 cut(s) 1333
Bme1390I CCNGG 6 cut(s) 20, 98, 305, 445, 1011, 1500
Bme18I GGWCC 5 cut(s) 22, 307, 1105, 1117, 1502
BmgT120I GGNCC 5 cut(s) 22, 307, 1105, 1117, 1502
BmiI GGNNCC 8 cut(s) 9, 24, 449, 461, 609, 642, 819, 1091
BmrFI CCNGG 6 cut(s) 20, 98, 305, 445, 1011, 1500
BmsI GCATC 3 cut(s) 825, 1026, 1297
BpiI GAAGAC 3 cut(s) 265, 403, 1194
Bpu10I CCTNAGC 1 cut(s) 624
Bpu1102I GCTNAGC 2 cut(s) 522, 792
BpuEI CTTGAG 1 cut(s) 1361
BpuMI CCSGG 4 cut(s) 98, 305, 445, 1011
BsaAI YACGTR 1 cut(s) 954
BsaBI GATNNNNATC 1 cut(s) 1449
BsaHI GRCGYC 1 cut(s) 818
BsaJI CCNNGG 3 cut(s) 421, 443, 1156
BsaWI WCCGGW 4 cut(s) 456, 549, 565, 1059
Bsc4I CCNNNNNNNGG 6 cut(s) 325, 427, 475, 556, 1099, 1114
Bse118I RCCGGY 2 cut(s) 526, 613
Bse3DI GCAATG 2 cut(s) 489, 789
Bse8I GATNNNNATC 1 cut(s) 1449
BseAI TCCGGA 2 cut(s) 456, 565
BseBI CCWGG 2 cut(s) 20, 1500
BseDI CCNNGG 3 cut(s) 421, 443, 1156
BseGI GGATG 6 cut(s) 315, 1138, 1205, 1423, 1444, 1450
BseJI GATNNNNATC 1 cut(s) 1449
BseLI CCNNNNNNNGG 6 cut(s) 325, 427, 475, 556, 1099, 1114
BseMI GCAATG 2 cut(s) 489, 789
BseMII CTCAG 5 cut(s) 404, 536, 638, 719, 806
BseXI GCAGC 3 cut(s) 214, 523, 814
BsgI GTGCAG 2 cut(s) 551, 821
Bsh1236I CGCG 4 cut(s) 237, 408, 423, 707
BshFI GGCC 3 cut(s) 962, 1494, 1524
BshNI GGYRCC 3 cut(s) 7, 447, 817
BslFI GGGAC 2 cut(s) 341, 425
BslI CCNNNNNNNGG 6 cut(s) 325, 427, 475, 556, 1099, 1114
BsmFI GGGAC 2 cut(s) 341, 425
BsmI GAATGC 2 cut(s) 1048, 1294
BsnI GGCC 3 cut(s) 962, 1494, 1524
Bsp1286I GDGCHC 1 cut(s) 213
Bsp13I TCCGGA 2 cut(s) 456, 565
Bsp1720I GCTNAGC 2 cut(s) 522, 792
Bsp19I CCATGG 1 cut(s) 1156
BspANI GGCC 3 cut(s) 962, 1494, 1524
BspCNI CTCAG 5 cut(s) 403, 535, 637, 720, 805
BspEI TCCGGA 2 cut(s) 456, 565
BspFNI CGCG 4 cut(s) 237, 408, 423, 707
BspLI GGNNCC 8 cut(s) 9, 24, 449, 461, 609, 642, 819, 1091
BspT107I GGYRCC 3 cut(s) 7, 447, 817
BsrBI CCGCTC 1 cut(s) 987
BsrDI GCAATG 2 cut(s) 489, 789
BsrFI RCCGGY 2 cut(s) 526, 613
BssAI RCCGGY 2 cut(s) 526, 613
BssECI CCNNGG 3 cut(s) 421, 443, 1156
BssNI GRCGYC 1 cut(s) 818
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 1156
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 20, 1500
Bst4CI ACNGT 4 cut(s) 79, 271, 683, 1121
Bst6I CTCTTC 3 cut(s) 287, 1322, 1340
BstACI GRCGYC 1 cut(s) 818
BstAPI GCANNNNNTGC 1 cut(s) 788
BstBAI YACGTR 1 cut(s) 954
BstC8I GCNNGC 4 cut(s) 380, 534, 615, 1359
BstDEI CTNAG 5 cut(s) 390, 522, 624, 728, 792
BstDSI CCRYGG 2 cut(s) 421, 1156
BstENI CCTNNNNNAGG 2 cut(s) 473, 1097
BstF5I GGATG 6 cut(s) 315, 1138, 1205, 1423, 1444, 1450
BstFNI CGCG 4 cut(s) 237, 408, 423, 707
BstH2I RGCGCY 1 cut(s) 821
BstHHI GCGC 2 cut(s) 820, 1250
BstMWI GCNNNNNNNGC 5 cut(s) 208, 405, 788, 802, 1491
BstNI CCWGG 2 cut(s) 20, 1500
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 6 cut(s) 18, 96, 303, 443, 1009, 1498
BstUI CGCG 4 cut(s) 237, 408, 423, 707
BstV1I GCAGC 3 cut(s) 214, 523, 814
BstV2I GAAGAC 3 cut(s) 265, 403, 1194
BsuI GTATCC 2 cut(s) 573, 1276
BsuRI GGCC 3 cut(s) 962, 1494, 1524
BtgI CCRYGG 2 cut(s) 421, 1156
BtsCI GGATG 6 cut(s) 315, 1138, 1205, 1423, 1444, 1450
Cac8I GCNNGC 4 cut(s) 380, 534, 615, 1359
CfoI GCGC 2 cut(s) 820, 1250
Cfr10I RCCGGY 2 cut(s) 526, 613
Cfr13I GGNCC 5 cut(s) 22, 307, 1105, 1117, 1502
Cfr42I CCGCGG 1 cut(s) 424
CseI GACGC 2 cut(s) 226, 397
Csp6I GTAC 4 cut(s) 703, 951, 1024, 1332
CviAII CATG 4 cut(s) 590, 1157, 1291, 1528
CviQI GTAC 4 cut(s) 703, 951, 1024, 1332
DdeI CTNAG 5 cut(s) 390, 522, 624, 728, 792
DinI GGCGCC 1 cut(s) 819
DraI TTTAAA 1 cut(s) 1314
Eam1104I CTCTTC 3 cut(s) 287, 1322, 1340
EarI CTCTTC 3 cut(s) 287, 1322, 1340
EciI GGCGGA 1 cut(s) 600
Eco130I CCWWGG 1 cut(s) 1156
Eco147I AGGCCT 2 cut(s) 962, 1494
Eco24I GRGCYC 1 cut(s) 213
Eco47I GGWCC 5 cut(s) 22, 307, 1105, 1117, 1502
Eco57I CTGAAG 1 cut(s) 1281
EcoNI CCTNNNNNAGG 2 cut(s) 473, 1097
EcoRII CCWGG 2 cut(s) 18, 1498
EcoT14I CCWWGG 1 cut(s) 1156
EcoT22I ATGCAT 2 cut(s) 591, 1296
EcoT38I GRGCYC 1 cut(s) 213
EgeI GGCGCC 1 cut(s) 819
EheI GGCGCC 1 cut(s) 819
ErhI CCWWGG 1 cut(s) 1156
FaeI CATG 4 cut(s) 593, 1160, 1294, 1531
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 2 cut(s) 341, 425
FatI CATG 4 cut(s) 589, 1156, 1290, 1527
FauI CCCGC 1 cut(s) 68
FauNDI CATATG 1 cut(s) 859
FokI GGATG 6 cut(s) 302, 1145, 1192, 1430, 1451, 1457
FriOI GRGCYC 1 cut(s) 213
FspBI CTAG 3 cut(s) 1086, 1176, 1482
GlaI GCGC 2 cut(s) 819, 1249
HaeII RGCGCY 1 cut(s) 821
HaeIII GGCC 3 cut(s) 962, 1494, 1524
HgaI GACGC 2 cut(s) 226, 397
HhaI GCGC 2 cut(s) 820, 1250
Hin1I GRCGYC 1 cut(s) 818
Hin1II CATG 4 cut(s) 593, 1160, 1294, 1531
Hin6I GCGC 2 cut(s) 818, 1248
HinP1I GCGC 2 cut(s) 818, 1248
HphI GGTGA 7 cut(s) 103, 175, 259, 359, 515, 778, 1175
Hpy166II GTNNAC 4 cut(s) 267, 1105, 1117, 1535
Hpy188III TCNNGA 5 cut(s) 14, 457, 566, 638, 1469
Hpy8I GTNNAC 4 cut(s) 267, 1105, 1117, 1535
Hpy99I CGWCG 4 cut(s) 242, 257, 260, 338
HpyCH4III ACNGT 4 cut(s) 79, 271, 683, 1121
HpyCH4IV ACGT 3 cut(s) 809, 953, 1394
HpyCH4V TGCA 7 cut(s) 532, 589, 656, 759, 802, 1039, 1294
HpyF10VI GCNNNNNNNGC 5 cut(s) 208, 405, 788, 802, 1491
HpyF3I CTNAG 5 cut(s) 390, 522, 624, 728, 792
HpySE526I ACGT 3 cut(s) 809, 953, 1394
Hsp92I GRCGYC 1 cut(s) 818
Hsp92II CATG 4 cut(s) 593, 1160, 1294, 1531
HspAI GCGC 2 cut(s) 818, 1248
KasI GGCGCC 1 cut(s) 817
Kpn2I TCCGGA 2 cut(s) 456, 565
KroI GCCGGC 1 cut(s) 613
KroNI GCCGGC 1 cut(s) 615
KspI CCGCGG 1 cut(s) 424
LmnI GCTCC 5 cut(s) 144, 404, 640, 846, 984
Lsp1109I GCAGC 3 cut(s) 214, 523, 814
LweI GCATC 3 cut(s) 825, 1026, 1297
MaeI CTAG 3 cut(s) 1086, 1176, 1482
MaeII ACGT 3 cut(s) 809, 953, 1394
MaeIII GTNAC 2 cut(s) 683, 989
MbiI CCGCTC 1 cut(s) 987
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 8 cut(s) 351, 484, 749, 872, 1143, 1239, 1322, 1513
Mly113I GGCGCC 1 cut(s) 818
MlyI GAGTC 5 cut(s) 95, 323, 330, 518, 643
MmeI TCCRAC 6 cut(s) 213, 357, 426, 879, 915, 1233
Mph1103I ATGCAT 2 cut(s) 591, 1296
MreI CGCCGGCG 1 cut(s) 613
MroI TCCGGA 2 cut(s) 456, 565
MroNI GCCGGC 1 cut(s) 613
MseI TTAA 2 cut(s) 1128, 1313
MslI CAYNNNNRTG 2 cut(s) 764, 1161
MspA1I CMGCKG 2 cut(s) 423, 796
MspR9I CCNGG 6 cut(s) 20, 98, 305, 445, 1011, 1500
Mva1269I GAATGC 2 cut(s) 1048, 1294
MvaI CCWGG 2 cut(s) 20, 1500
MvnI CGCG 4 cut(s) 237, 408, 423, 707
MwoI GCNNNNNNNGC 5 cut(s) 208, 405, 788, 802, 1491
NaeI GCCGGC 1 cut(s) 615
NarI GGCGCC 1 cut(s) 818
NciI CCSGG 4 cut(s) 98, 305, 445, 1011
NcoI CCATGG 1 cut(s) 1156
NdeI CATATG 1 cut(s) 859
NgoMIV GCCGGC 1 cut(s) 613
NlaIII CATG 4 cut(s) 593, 1160, 1294, 1531
NlaIV GGNNCC 8 cut(s) 9, 24, 449, 461, 609, 642, 819, 1091
NmeAIII GCCGAG 1 cut(s) 1500
NmuCI GTSAC 1 cut(s) 683
NsiI ATGCAT 2 cut(s) 591, 1296
NspI RCATGY 1 cut(s) 593
PceI AGGCCT 2 cut(s) 962, 1494
PctI GAATGC 2 cut(s) 1048, 1294
PdiI GCCGGC 1 cut(s) 615
PfeI GAWTC 5 cut(s) 851, 1139, 1226, 1450, 1472
PfoI TCCNGGA 2 cut(s) 96, 303
PleI GAGTC 5 cut(s) 95, 323, 329, 517, 642
PluTI GGCGCC 1 cut(s) 821
PpsI GAGTC 5 cut(s) 95, 323, 329, 517, 642
Ppu21I YACGTR 1 cut(s) 954
Psp6I CCWGG 2 cut(s) 18, 1498
PspGI CCWGG 2 cut(s) 18, 1498
PspN4I GGNNCC 8 cut(s) 9, 24, 449, 461, 609, 642, 819, 1091
PspPI GGNCC 5 cut(s) 22, 307, 1105, 1117, 1502
PvuII CAGCTG 1 cut(s) 796
RsaI GTAC 4 cut(s) 704, 952, 1025, 1333
RsaNI GTAC 4 cut(s) 703, 951, 1024, 1332
RseI CAYNNNNRTG 2 cut(s) 764, 1161
SacII CCGCGG 1 cut(s) 424
SaqAI TTAA 2 cut(s) 1128, 1313
Sau96I GGNCC 5 cut(s) 22, 307, 1105, 1117, 1502
ScaI AGTACT 1 cut(s) 1333
SchI GAGTC 5 cut(s) 95, 323, 330, 518, 643
ScrFI CCNGG 6 cut(s) 20, 98, 305, 445, 1011, 1500
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 3 cut(s) 825, 1026, 1297
SfoI GGCGCC 1 cut(s) 819
Sfr303I CCGCGG 1 cut(s) 424
SgrAI CRCCGGYG 1 cut(s) 613
SgrBI CCGCGG 1 cut(s) 424
SinI GGWCC 5 cut(s) 22, 307, 1105, 1117, 1502
SmiMI CAYNNNNRTG 2 cut(s) 764, 1161
SmlI CTYRAG 1 cut(s) 1340
SmoI CTYRAG 1 cut(s) 1340
SpeI ACTAGT 1 cut(s) 1175
Sse9I AATT 8 cut(s) 351, 484, 749, 872, 1143, 1239, 1322, 1513
SseBI AGGCCT 2 cut(s) 962, 1494
SspDI GGCGCC 1 cut(s) 817
SspMI CTAG 3 cut(s) 1086, 1176, 1482
StuI AGGCCT 2 cut(s) 962, 1494
StyD4I CCNGG 6 cut(s) 18, 96, 303, 443, 1009, 1498
StyI CCWWGG 1 cut(s) 1156
TaaI ACNGT 4 cut(s) 79, 271, 683, 1121
TaiI ACGT 3 cut(s) 812, 956, 1397
TaqI TCGA 3 cut(s) 252, 776, 1221
TasI AATT 8 cut(s) 351, 484, 749, 872, 1143, 1239, 1322, 1513
TatI WGTACW 1 cut(s) 1331
TauI GCSGC 7 cut(s) 8, 134, 362, 423, 497, 521, 710
TfiI GAWTC 5 cut(s) 851, 1139, 1226, 1450, 1472
Tru1I TTAA 2 cut(s) 1128, 1313
Tru9I TTAA 2 cut(s) 1128, 1313
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 3 cut(s) 202, 536, 802
Tsp45I GTSAC 1 cut(s) 683
TspGWI ACGGA 1 cut(s) 1421
VpaK11BI GGWCC 5 cut(s) 22, 307, 1105, 1117, 1502
XagI CCTNNNNNAGG 2 cut(s) 473, 1097
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 593
XspI CTAG 3 cut(s) 1086, 1176, 1482
ZrmI AGTACT 1 cut(s) 1333
Zsp2I ATGCAT 2 cut(s) 591, 1296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.