Rh2CG227200

Protein SGT1 homolog At5g65490-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011479
Physical Location & Seq
Forward (+)
23006313 .. 23011358
5046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG227200.1

Sequence Viewer

Length: 1533 bp
ATGGCGGCGCCTCCAGACCTGGACCCTTCCTCCTCCATATTCTCCCACAAAAACTCCCGCCTCCCAGACGACACCGTTTTCTACGCCATCTTCCCGGACTCCTCCCTCACCTCCACCTCCACCTCCACCACCGCCGCCTCGCTCCACTCCCTCCACCTCCAAATCCTCCAAACCCTAACCCCCTTCACCTCCGACTACATTTGGCAGCACGAGCCCTTCACTCTCTCCCCCTCCGCCGCCCCCAAGCCCTCCTGCCTCTGCTCCCCCCACCTCCCTCACCTCCACGGCAAGCTCCGCGTCGGCGACAACCTCGACGACGAGTGGTTCACTGTCTTCCTCCTCTTCCACATCTCCTCCACCTTCCCGGACCTCTCCATCCGAGTCTGGGACTCCGACGGCGAGTTTCTCCTAATTGAAGCCGCCTTTCACCTCCCTCGCTGGCTCAACCCTCAGACCAGCTCCAACCGCGTCTTCATTCGCCGCGCTCAGGTTCATATCGTCCCCCGGCACCGCCTCCGGAACCCTAACCTGACAGAGGCGTTGAATTTCATTGCGGCGTTTGGTGAGGAGTCGGTTGCGGCTGAGCCGGTGCAGGCTGCGGTGAAGAACCGGATTTCGGAGTATCCGGAGAAGGCCAGGAGGAATATGCATGTGGTTAGGGTTAGGGTTCCGCCGGCGGTGGCTCAGGTGTTGAGTCAGGAGCCGTGTCTGGTTGCATTGGCGGTTGAGGGCTTCTATGACCGTGACATTGATACAATGAAGTATGCGGCGAAGATGGAGAGGTTTCTGAGCAGAGGGAGGGAGGAGGAATTGGTGTGCATATCGGTGAAAATGTCGAGGGCAATGTATGCTCAGCTGGTGCAGCAGACGTTTCAGGCGCCAAAATGTTATCCAATGCCGAATAGGAGCGATTCGGCATATGTGGAGGCTGAATTGGGAATGAAGATTGCGTGTGGGTTGGAGATGATGTATCAGCATAGGAGAAAGGAGGGGTTGGAAGGGAAAGGGAGTACGTGGGAGGCCTTTAGGGAGAGTTTGGAGAGGAGCGGTTACTTTGAAGGGTTGCTTCCGGGTTCGAAAGAGTACCAGAGGTTGATGCAGAATGCGGAGGAGTATTACCGGAGTAGTGCTTCGTTTTCAAGGGCTAGTGAGATGATGAGTGCTCCAGTGAGGCGCATAGATGAGATTCTTGCTTTACCTTATTCGGTGGATGATTTTAAGCGTGTAGATGTTCCACCTTCTGATGATGATTCTTGGCTTTACAATGGAGAGGATGAATTGAACTCTGAACTTCTAGAGAGACAAAAGGAGATGGAACTTTATGATTTAAAACATAAGAAGAAGCAGAAGTCAAAAGAGCAGGACAATGTTGGTCCATCCTCCAGCTCTAACACTGATGAGTTCAATCCTGGTGATATAGCAAAAACCATGCAGGCCTTTGTCGAAAAGGTGTCAAGCTACAAGGGAGCTGAGGTTCCTGAGAACAGGTTAGTGCCTATCTGTTACTTATGTTTGTGTATCAGTTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SGT1

Protein Analysis

510

Amino Acids

57.86

Weight (kDa)

5.69

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGT1 PF07093 26 - 496 1.2e-170 SGT1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 7, 507, 877
AccBSI CCGCTC 1 cut(s) 1047
AccII CGCG 3 cut(s) 297, 468, 483
AccIII TCCGGA 2 cut(s) 516, 625
AcsI RAATTY 1 cut(s) 544
AcyI GRCGYC 2 cut(s) 8, 878
AfaI GTAC 2 cut(s) 1012, 1085
AfiI CCNNNNNNNGG 4 cut(s) 385, 487, 535, 616
AgsI TTSAA 6 cut(s) 416, 544, 1058, 1140, 1282, 1405
AjnI CCWGG 3 cut(s) 18, 635, 1408
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AloI GAACNNNNNNTCC 2 cut(s) 1458, 1490
AluBI AGCT 6 cut(s) 292, 459, 856, 1386, 1458, 1469
AluI AGCT 6 cut(s) 292, 459, 856, 1386, 1458, 1469
Alw21I GWGCWC 1 cut(s) 1165
Alw26I GTCTC 1 cut(s) 1294
Aor13HI TCCGGA 2 cut(s) 516, 625
AoxI GGCC 3 cut(s) 633, 1020, 1434
ApeKI GCWGC 3 cut(s) 205, 596, 862
ApoI RAATTY 1 cut(s) 544
AspLEI GCGC 4 cut(s) 10, 485, 880, 1176
AspS9I GGNCC 3 cut(s) 22, 367, 1373
AsuC2I CCSGG 4 cut(s) 95, 365, 505, 1071
AsuHPI GGTGA 8 cut(s) 100, 178, 269, 419, 575, 613, 838, 1424
AsuII TTCGAA 1 cut(s) 1076
AvaII GGWCC 3 cut(s) 22, 367, 1373
BanI GGYRCC 3 cut(s) 7, 507, 877
BanII GRGCYC 1 cut(s) 216
BarI GAAGNNNNNNTAC 1 cut(s) 1510
BauI CACGAG 1 cut(s) 209
BbsI GAAGAC 2 cut(s) 325, 463
Bbv12I GWGCWC 1 cut(s) 1165
BbvCI CCTCAGC 1 cut(s) 1470
BbvI GCAGC 3 cut(s) 217, 583, 874
BccI CCATC 5 cut(s) 95, 383, 769, 1306, 1384
BceAI ACGGC 3 cut(s) 301, 412, 688
BciT130I CCWGG 3 cut(s) 20, 637, 1410
BciVI GTATCC 1 cut(s) 633
BcnI CCSGG 4 cut(s) 95, 365, 505, 1071
BcoDI GTCTC 1 cut(s) 1294
BfaI CTAG 2 cut(s) 1146, 1295
BfoI RGCGCY 2 cut(s) 11, 881
BfuI GTATCC 1 cut(s) 633
BlpI GCTNAGC 2 cut(s) 582, 852
Bme1390I CCNGG 7 cut(s) 20, 95, 365, 505, 637, 1071, 1410
Bme18I GGWCC 3 cut(s) 22, 367, 1373
BmgT120I GGNCC 3 cut(s) 22, 367, 1373
BmiI GGNNCC 8 cut(s) 9, 24, 509, 521, 669, 702, 879, 1476
BmrFI CCNGG 7 cut(s) 20, 95, 365, 505, 637, 1071, 1410
BmsI GCATC 1 cut(s) 1086
BpiI GAAGAC 2 cut(s) 325, 463
BpmI CTGGAG 2 cut(s) 1149, 1366
Bpu10I CCTNAGC 3 cut(s) 486, 684, 1470
Bpu1102I GCTNAGC 2 cut(s) 582, 852
Bpu14I TTCGAA 1 cut(s) 1076
BpuMI CCSGG 4 cut(s) 95, 365, 505, 1071
BsaAI YACGTR 1 cut(s) 1014
BsaHI GRCGYC 2 cut(s) 8, 878
BsaJI CCNNGG 2 cut(s) 283, 503
BsaWI WCCGGW 4 cut(s) 516, 609, 625, 1119
Bsc4I CCNNNNNNNGG 4 cut(s) 385, 487, 535, 616
Bse118I RCCGGY 2 cut(s) 586, 673
Bse1I ACTGG 1 cut(s) 1166
Bse3DI GCAATG 2 cut(s) 549, 849
BseAI TCCGGA 2 cut(s) 516, 625
BseBI CCWGG 3 cut(s) 20, 637, 1410
BseDI CCNNGG 2 cut(s) 283, 503
BseGI GGATG 4 cut(s) 375, 1216, 1279, 1376
BseLI CCNNNNNNNGG 4 cut(s) 385, 487, 535, 616
BseMI GCAATG 2 cut(s) 549, 849
BseMII CTCAG 8 cut(s) 464, 500, 573, 698, 779, 866, 1461, 1470
BseNI ACTGG 1 cut(s) 1166
BseRI GAGGAG 8 cut(s) 22, 91, 329, 343, 581, 818, 1057, 1124
BseXI GCAGC 3 cut(s) 217, 583, 874
BsgI GTGCAG 2 cut(s) 611, 881
Bsh1236I CGCG 3 cut(s) 297, 468, 483
BshFI GGCC 3 cut(s) 635, 1022, 1436
BshNI GGYRCC 3 cut(s) 7, 507, 877
BsiHKAI GWGCWC 1 cut(s) 1165
BslFI GGGAC 2 cut(s) 401, 485
BslI CCNNNNNNNGG 4 cut(s) 385, 487, 535, 616
BsmAI GTCTC 1 cut(s) 1294
BsmFI GGGAC 2 cut(s) 401, 485
BsmI GAATGC 1 cut(s) 1108
BsnI GGCC 3 cut(s) 635, 1022, 1436
Bsp119I TTCGAA 1 cut(s) 1076
Bsp1286I GDGCHC 2 cut(s) 216, 1165
Bsp13I TCCGGA 2 cut(s) 516, 625
Bsp1720I GCTNAGC 2 cut(s) 582, 852
BspANI GGCC 3 cut(s) 635, 1022, 1436
BspCNI CTCAG 8 cut(s) 463, 499, 574, 697, 780, 865, 1462, 1471
BspEI TCCGGA 2 cut(s) 516, 625
BspFNI CGCG 3 cut(s) 297, 468, 483
BspHI TCATGA 1 cut(s) 1529
BspLI GGNNCC 8 cut(s) 9, 24, 509, 521, 669, 702, 879, 1476
BspT104I TTCGAA 1 cut(s) 1076
BspT107I GGYRCC 3 cut(s) 7, 507, 877
BsrBI CCGCTC 1 cut(s) 1047
BsrDI GCAATG 2 cut(s) 549, 849
BsrFI RCCGGY 2 cut(s) 586, 673
BsrI ACTGG 1 cut(s) 1166
BssAI RCCGGY 2 cut(s) 586, 673
BssECI CCNNGG 2 cut(s) 283, 503
BssNI GRCGYC 2 cut(s) 8, 878
BssSI CACGAG 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 3 cut(s) 20, 637, 1410
Bst4CI ACNGT 3 cut(s) 76, 331, 743
Bst6I CTCTTC 1 cut(s) 347
BstACI GRCGYC 2 cut(s) 8, 878
BstAPI GCANNNNNTGC 1 cut(s) 848
BstBAI YACGTR 1 cut(s) 1014
BstBI TTCGAA 1 cut(s) 1076
BstC8I GCNNGC 5 cut(s) 290, 440, 594, 675, 1434
BstDEI CTNAG 8 cut(s) 450, 486, 582, 684, 788, 852, 1470, 1479
BstDSI CCRYGG 1 cut(s) 283
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 4 cut(s) 375, 1216, 1279, 1376
BstFNI CGCG 3 cut(s) 297, 468, 483
BstH2I RGCGCY 2 cut(s) 11, 881
BstHHI GCGC 4 cut(s) 10, 485, 880, 1176
BstMAI GTCTC 1 cut(s) 1294
BstMWI GCNNNNNNNGC 5 cut(s) 211, 294, 465, 848, 862
BstNI CCWGG 3 cut(s) 20, 637, 1410
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 7 cut(s) 18, 93, 363, 503, 635, 1069, 1408
BstUI CGCG 3 cut(s) 297, 468, 483
BstV1I GCAGC 3 cut(s) 217, 583, 874
BstV2I GAAGAC 2 cut(s) 325, 463
BsuI GTATCC 1 cut(s) 633
BsuRI GGCC 3 cut(s) 635, 1022, 1436
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 4 cut(s) 375, 1216, 1279, 1376
BtsIMutI CAGTG 3 cut(s) 327, 1173, 1392
Cac8I GCNNGC 5 cut(s) 290, 440, 594, 675, 1434
CciI TCATGA 1 cut(s) 1529
CfoI GCGC 4 cut(s) 10, 485, 880, 1176
Cfr10I RCCGGY 2 cut(s) 586, 673
Cfr13I GGNCC 3 cut(s) 22, 367, 1373
CseI GACGC 2 cut(s) 286, 457
Csp6I GTAC 2 cut(s) 1011, 1084
CviAII CATG 3 cut(s) 650, 1429, 1530
CviQI GTAC 2 cut(s) 1011, 1084
DdeI CTNAG 8 cut(s) 450, 486, 582, 684, 788, 852, 1470, 1479
DinI GGCGCC 2 cut(s) 9, 879
DraI TTTAAA 1 cut(s) 1329
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
EciI GGCGGA 2 cut(s) 223, 660
Eco147I AGGCCT 2 cut(s) 1022, 1436
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 3 cut(s) 22, 367, 1373
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoRII CCWGG 3 cut(s) 18, 635, 1408
EcoT22I ATGCAT 1 cut(s) 651
EcoT38I GRGCYC 1 cut(s) 216
EgeI GGCGCC 2 cut(s) 9, 879
EheI GGCGCC 2 cut(s) 9, 879
FaeI CATG 3 cut(s) 653, 1432, 1533
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 2 cut(s) 401, 485
FatI CATG 3 cut(s) 649, 1428, 1529
FauI CCCGC 1 cut(s) 65
FauNDI CATATG 1 cut(s) 919
FokI GGATG 4 cut(s) 362, 1223, 1286, 1363
FriOI GRGCYC 1 cut(s) 216
FspBI CTAG 2 cut(s) 1146, 1295
GlaI GCGC 4 cut(s) 9, 484, 879, 1175
GsuI CTGGAG 2 cut(s) 1149, 1366
HaeII RGCGCY 2 cut(s) 11, 881
HaeIII GGCC 3 cut(s) 635, 1022, 1436
HgaI GACGC 2 cut(s) 286, 457
HhaI GCGC 4 cut(s) 10, 485, 880, 1176
Hin1I GRCGYC 2 cut(s) 8, 878
Hin1II CATG 3 cut(s) 653, 1432, 1533
Hin6I GCGC 4 cut(s) 8, 483, 878, 1174
HinP1I GCGC 4 cut(s) 8, 483, 878, 1174
HinfI GANTC 8 cut(s) 98, 381, 389, 569, 694, 911, 1186, 1250
HphI GGTGA 8 cut(s) 100, 178, 269, 419, 575, 613, 838, 1424
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 8 cut(s) 193, 380, 394, 453, 619, 789, 1243, 1288
Hpy188III TCNNGA 7 cut(s) 14, 517, 626, 698, 1295, 1478, 1530
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 4 cut(s) 302, 317, 320, 398
HpyAV CCTTC 8 cut(s) 36, 193, 226, 370, 625, 992, 1052, 1248
HpyCH4III ACNGT 3 cut(s) 76, 331, 743
HpyCH4IV ACGT 2 cut(s) 869, 1013
HpyCH4V TGCA 7 cut(s) 592, 649, 716, 819, 862, 1099, 1432
HpyF10VI GCNNNNNNNGC 5 cut(s) 211, 294, 465, 848, 862
HpyF3I CTNAG 8 cut(s) 450, 486, 582, 684, 788, 852, 1470, 1479
HpySE526I ACGT 2 cut(s) 869, 1013
Hsp92I GRCGYC 2 cut(s) 8, 878
Hsp92II CATG 3 cut(s) 653, 1432, 1533
HspAI GCGC 4 cut(s) 8, 483, 878, 1174
KasI GGCGCC 2 cut(s) 7, 877
Kpn2I TCCGGA 2 cut(s) 516, 625
KroI GCCGGC 1 cut(s) 673
KroNI GCCGGC 1 cut(s) 675
LmnI GCTCC 9 cut(s) 147, 266, 297, 464, 700, 906, 1044, 1168, 1466
Lsp1109I GCAGC 3 cut(s) 217, 583, 874
LweI GCATC 1 cut(s) 1086
MaeI CTAG 2 cut(s) 1146, 1295
MaeII ACGT 2 cut(s) 869, 1013
MaeIII GTNAC 3 cut(s) 743, 1049, 1502
MbiI CCGCTC 1 cut(s) 1047
MboII GAAGA 9 cut(s) 82, 325, 334, 463, 616, 784, 955, 1351, 1518
MhlI GDGCHC 2 cut(s) 216, 1165
MluCI AATT 5 cut(s) 411, 544, 809, 932, 1277
Mly113I GGCGCC 2 cut(s) 8, 878
MlyI GAGTC 5 cut(s) 92, 383, 390, 578, 703
MmeI TCCRAC 5 cut(s) 216, 417, 486, 939, 975
Mph1103I ATGCAT 1 cut(s) 651
MreI CGCCGGCG 1 cut(s) 673
MroI TCCGGA 2 cut(s) 516, 625
MroNI GCCGGC 1 cut(s) 673
MseI TTAA 2 cut(s) 1218, 1328
MslI CAYNNNNRTG 1 cut(s) 824
MspA1I CMGCKG 1 cut(s) 856
MspR9I CCNGG 7 cut(s) 20, 95, 365, 505, 637, 1071, 1410
Mva1269I GAATGC 1 cut(s) 1108
MvaI CCWGG 3 cut(s) 20, 637, 1410
MvnI CGCG 3 cut(s) 297, 468, 483
MwoI GCNNNNNNNGC 5 cut(s) 211, 294, 465, 848, 862
NaeI GCCGGC 1 cut(s) 675
NarI GGCGCC 2 cut(s) 8, 878
NciI CCSGG 4 cut(s) 95, 365, 505, 1071
NdeI CATATG 1 cut(s) 919
NgoMIV GCCGGC 1 cut(s) 673
NlaIII CATG 3 cut(s) 653, 1432, 1533
NlaIV GGNNCC 8 cut(s) 9, 24, 509, 521, 669, 702, 879, 1476
NmuCI GTSAC 1 cut(s) 743
NsiI ATGCAT 1 cut(s) 651
NspI RCATGY 1 cut(s) 653
NspV TTCGAA 1 cut(s) 1076
PagI TCATGA 1 cut(s) 1529
PceI AGGCCT 2 cut(s) 1022, 1436
PctI GAATGC 1 cut(s) 1108
PdiI GCCGGC 1 cut(s) 675
PfeI GAWTC 3 cut(s) 911, 1186, 1250
PfoI TCCNGGA 2 cut(s) 93, 363
PleI GAGTC 5 cut(s) 92, 383, 389, 577, 702
PluTI GGCGCC 2 cut(s) 11, 881
PpsI GAGTC 5 cut(s) 92, 383, 389, 577, 702
Ppu21I YACGTR 1 cut(s) 1014
Psp6I CCWGG 3 cut(s) 18, 635, 1408
PspGI CCWGG 3 cut(s) 18, 635, 1408
PspN4I GGNNCC 8 cut(s) 9, 24, 509, 521, 669, 702, 879, 1476
PspPI GGNCC 3 cut(s) 22, 367, 1373
PvuII CAGCTG 1 cut(s) 856
RsaI GTAC 2 cut(s) 1012, 1085
RsaNI GTAC 2 cut(s) 1011, 1084
RseI CAYNNNNRTG 1 cut(s) 824
SaqAI TTAA 2 cut(s) 1218, 1328
Sau96I GGNCC 3 cut(s) 22, 367, 1373
SchI GAGTC 5 cut(s) 92, 383, 390, 578, 703
ScrFI CCNGG 7 cut(s) 20, 95, 365, 505, 637, 1071, 1410
SduI GDGCHC 2 cut(s) 216, 1165
SfaNI GCATC 1 cut(s) 1086
SfoI GGCGCC 2 cut(s) 9, 879
SfuI TTCGAA 1 cut(s) 1076
SgrAI CRCCGGYG 1 cut(s) 673
SinI GGWCC 3 cut(s) 22, 367, 1373
SmiMI CAYNNNNRTG 1 cut(s) 824
Sse9I AATT 5 cut(s) 411, 544, 809, 932, 1277
SseBI AGGCCT 2 cut(s) 1022, 1436
SspDI GGCGCC 2 cut(s) 7, 877
SspMI CTAG 2 cut(s) 1146, 1295
StuI AGGCCT 2 cut(s) 1022, 1436
StyD4I CCNGG 7 cut(s) 18, 93, 363, 503, 635, 1069, 1408
TaaI ACNGT 3 cut(s) 76, 331, 743
TaiI ACGT 2 cut(s) 872, 1016
TaqI TCGA 4 cut(s) 312, 836, 1076, 1443
TasI AATT 5 cut(s) 411, 544, 809, 932, 1277
TauI GCSGC 8 cut(s) 8, 137, 239, 422, 483, 557, 581, 770
TfiI GAWTC 3 cut(s) 911, 1186, 1250
Tru1I TTAA 2 cut(s) 1218, 1328
Tru9I TTAA 2 cut(s) 1218, 1328
TscAI CASTG 3 cut(s) 334, 1173, 1399
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 3 cut(s) 205, 596, 862
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 7 cut(s) 463, 482, 538, 773, 956, 1290, 1518
TspRI CASTG 3 cut(s) 334, 1173, 1399
VpaK11BI GGWCC 3 cut(s) 22, 367, 1373
XagI CCTNNNNNAGG 1 cut(s) 533
XapI RAATTY 1 cut(s) 544
XbaI TCTAGA 1 cut(s) 1294
XceI RCATGY 1 cut(s) 653
XspI CTAG 2 cut(s) 1146, 1295
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.