Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007256

Physical Location & Seq

Genomic Coordinates Forward (+)

15004824 .. 15009032

Gene Structure 4209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGAAAGCTCCTAGACAGAGAAACTCGAAAGTGATCAAGGTTCCTATAAAGGGCAGAGCAAGTAAAGGTAGCATGGGAGAACAAAAATCTACAAGGGGAACTACACAGCACTGTCAGAGAGAACCAGGGAAAGATGACAATGAAAAAGACAAGCATTTATCACCTTGCAAAGCAGCTAAAGGCTTGGATTTGGAACTTTCTGATGTACAGTTTCCAGAACCAACAGAGAAGCTGCGTGTTTATGGCATTCATGGAGGGAAACCACTTCTTCCTCATTCAAAGATCAAATTGCAGCTTTTTCCTGTAAATGAAGGCATTCGAATAGGATTGGTAAAGGATGGATTTCATCCGTACTTGGAACTCACTCTTAGAGCACGGAAGAAGATCTCTTCTGTTTTAAATCACCTTATTAGCAAATGGGGCAGTTCAAGCGCTGCTCTTGGTGAGCTGGTTTTGTTCCCATATAGGATACAGGACAGTGTATCTAGTAACAGAAGATGGACACTGAATGATGGCGACATCTGTGCTGGAGATGTCTATGCAGCTATTGGAAGCCCTGAAGTTTTTCGCTTAAGGTATGGTTGGTTCTCTAATCAACATAAATCATCTGACAAGCCTTCTACATCAGTTAATGACAAGGTTGACTTACAGTCTAAAGGCATAAAGAGAGATACTAGCACCCCTGCAGAGAATGCATATGAAGTAGATGGTAAACATGTGGTTGTTGATACTGAAACTAACTTAAGCATTGGAGGCCTCCTTTCCGAAGCATCCTTACAGGCCAGGTGCAATAATGGAAATAAGAACCATAGGGAGAAGGCTAAGACCCCGCATCCCCTGGACAAAAAGAGTGATTCAAAATCATTTGAGTTGTGGTCTGATTGTCCATCTATAAGCATTGGTGGTATCCTGTCTGAAGTATCCTTACAGGGAAAAGTCAATCGTTTTGTTGCGCAATCAAATGTGAGCAATCCAAGCTTGCAGCCAGGTCATTCTAAATATGATAGTCCTCAAGGCACTAGGCAATCCACTCATGATCCATGCTTATCAATTTTGGATGCTGAAGAAACCTGTCATGCATTTCCTTCTCAAAAGCTTTCTCTGGGAAAAGATGTTCTGGGTTTTGATGGAAGTTGTGGAGGTTCTAGCCAGAACTCTGGTTTCAAATTATTCAAGTTTCCTCTTCCAGCCAAGGCTAATAGATTAGATGAGCTTCCGCAAGACCCTGCTCAGCAAGAATCTAATACAGAACGGATGAATTTTTCATATATGAACAATGATGAACGGAGCCTTGGGCTATCTGGCATCAAATGGACGGACTCTTTGGGACCCTTTGATCTTGGCCTGCCAGTCTCCCAGAAGCTCTGTAATGCAGAGAGTACAAGCATCAGTGGATTTGCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

No domains found.

Protein Analysis

469

Amino Acids

51.29

Weight (kDa)

9.0

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39380 AT4G39380 AT4G39380 AT4G39380
fragaria_vesca	FvH4_1g23150
malus_domestica	MD01G1014700.v1.1 MD15G1336300.v1.1
prunus_persica	Prupe.6G167500_v2.0.a1 Prupe.6G167500_v2.0.a1 Prupe.6G167500_v2.0.a1 Prupe.6G167500_v2.0.a1
pyrus_communis	pycom01g04650 pycom15g28950
rosa_chinensis	RchiOBHm_Chr2g0117871
rosa_laevigata	RLG00000018381
rosa_multiflora	Rmu_co8235109.1_g000001 Rmu_sc0004968.1_g000005 Rmu_sc0011918.1_g000003
rosa_roxburghii	Rroxscaffold_2G00126140
rosa_rugosa	Rorug02G0214700
rosa_samantha	Rh2AG270900 Rh2BG282500 Rh2DG278800 Rh2DG296700
rosa_wichuraiana	Rw2G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	954
AciI	CCGC	2 cut(s)	830, 1217
AclWI	GGATC	1 cut(s)	1031
AcsI	RAATTY	1 cut(s)	1258
AcuI	CTGAAG	3 cut(s)	579, 936, 1083
AfaI	GTAC	3 cut(s)	207, 353, 1381
AfeI	AGCGCT	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflII	CTTAAG	2 cut(s)	571, 742
AflIII	ACRYGT	1 cut(s)	715
AgsI	TTSAA	5 cut(s)	279, 429, 858, 1165, 1174
AhdI	GACNNNNNGTC	1 cut(s)	649
AjnI	CCWGG	4 cut(s)	124, 782, 837, 985
AjuI	GAANNNNNNNTTGG	2 cut(s)	1275, 1307
AloI	GAACNNNNNNTCC	2 cut(s)	1098, 1130
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	1357
AlwI	GGATC	1 cut(s)	1031
Aor51HI	AGCGCT	1 cut(s)	433
AoxI	GGCC	3 cut(s)	754, 780, 1342
ApeKI	GCWGC	6 cut(s)	173, 232, 292, 434, 542, 982
ApoI	RAATTY	1 cut(s)	1258
ArsI	GACNNNNNNTTYG	2 cut(s)	1306, 1338
Asp700I	GAANNNNTTC	2 cut(s)	315, 564
AspLEI	GCGC	2 cut(s)	434, 955
AspS9I	GGNCC	1 cut(s)	1328
AsuHPI	GGTGA	3 cut(s)	153, 395, 455
AsuII	TTCGAA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	1328
BarI	GAAGNNNNNNTAC	4 cut(s)	759, 791, 909, 941
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	6 cut(s)	185, 219, 304, 421, 554, 994
BccI	CCATC	6 cut(s)	332, 492, 506, 701, 895, 1121
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	4 cut(s)	126, 784, 839, 987
BciVI	GTATCC	3 cut(s)	462, 917, 931
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	1357
BfaI	CTAG	5 cut(s)	12, 486, 675, 1020, 1146
BfmI	CTRYAG	1 cut(s)	684
BfoI	RGCGCY	1 cut(s)	435
BfrI	CTTAAG	2 cut(s)	571, 742
BfuI	GTATCC	3 cut(s)	462, 917, 931
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	6 cut(s)	174, 233, 293, 435, 543, 983
BlpI	GCTNAGC	1 cut(s)	1230
BlsI	GCNGC	6 cut(s)	175, 234, 294, 436, 544, 984
Bme1390I	CCNGG	4 cut(s)	126, 784, 839, 987
Bme18I	GGWCC	1 cut(s)	1328
BmeRI	GACNNNNNGTC	1 cut(s)	649
BmgT120I	GGNCC	1 cut(s)	1328
BmiI	GGNNCC	4 cut(s)	42, 1289, 1329, 1330
BmrFI	CCNGG	4 cut(s)	126, 784, 839, 987
BmsI	GCATC	5 cut(s)	779, 841, 1048, 1314, 1395
BpmI	CTGGAG	1 cut(s)	549
Bpu1102I	GCTNAGC	1 cut(s)	1230
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	996
BsaJI	CCNNGG	4 cut(s)	125, 837, 1191, 1291
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	1349
BseBI	CCWGG	4 cut(s)	126, 784, 839, 987
BseDI	CCNNGG	4 cut(s)	125, 837, 1191, 1291
BseGI	GGATG	6 cut(s)	343, 346, 770, 832, 1063, 1260
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	1244
BseNI	ACTGG	1 cut(s)	1349
BseXI	GCAGC	6 cut(s)	185, 219, 304, 421, 554, 994
BshFI	GGCC	3 cut(s)	756, 782, 1344
BsiHKAI	GWGCWC	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	1341
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	1357
BsmFI	GGGAC	1 cut(s)	1341
BsmI	GAATGC	3 cut(s)	246, 315, 697
BsnI	GGCC	3 cut(s)	756, 782, 1344
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	205
Bsp143I	GATC	5 cut(s)	33, 282, 384, 1036, 1336
Bsp1720I	GCTNAGC	1 cut(s)	1230
BspACI	CCGC	2 cut(s)	830, 1217
BspANI	GGCC	3 cut(s)	756, 782, 1344
BspCNI	CTCAG	1 cut(s)	1243
BspHI	TCATGA	1 cut(s)	1033
BspLI	GGNNCC	4 cut(s)	42, 1289, 1329, 1330
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	1 cut(s)	1031
BspT104I	TTCGAA	1 cut(s)	319
BspTI	CTTAAG	2 cut(s)	571, 742
BsrGI	TGTACA	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	1349
BssECI	CCNNGG	4 cut(s)	125, 837, 1191, 1291
BssMI	GATC	5 cut(s)	33, 282, 384, 1036, 1336
BssT1I	CCWWGG	2 cut(s)	1191, 1291
Bst2UI	CCWGG	4 cut(s)	126, 784, 839, 987
Bst4CI	ACNGT	4 cut(s)	113, 210, 479, 651
Bst6I	CTCTTC	2 cut(s)	394, 1188
BstAFI	CTTAAG	2 cut(s)	571, 742
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstAUI	TGTACA	1 cut(s)	205
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	980, 1346
BstDEI	CTNAG	4 cut(s)	368, 822, 1230, 1401
BstF5I	GGATG	6 cut(s)	343, 346, 770, 832, 1063, 1260
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	2 cut(s)	434, 955
BstKTI	GATC	5 cut(s)	36, 285, 387, 1039, 1339
BstMAI	GTCTC	1 cut(s)	1357
BstMBI	GATC	5 cut(s)	33, 282, 384, 1036, 1336
BstMWI	GCNNNNNNNGC	5 cut(s)	420, 429, 692, 753, 975
BstNI	CCWGG	4 cut(s)	126, 784, 839, 987
BstNSI	RCATGY	1 cut(s)	719
BstSCI	CCNGG	4 cut(s)	124, 782, 837, 985
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	6 cut(s)	185, 219, 304, 421, 554, 994
BstX2I	RGATCY	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	1157
BstYI	RGATCY	1 cut(s)	384
BsuI	GTATCC	3 cut(s)	462, 917, 931
BsuRI	GGCC	3 cut(s)	756, 782, 1344
BtsCI	GGATG	6 cut(s)	343, 346, 770, 832, 1063, 1260
BtsIMutI	CAGTG	4 cut(s)	109, 484, 503, 1396
Cac8I	GCNNGC	2 cut(s)	980, 1346
CciI	TCATGA	1 cut(s)	1033
CfoI	GCGC	2 cut(s)	434, 955
Cfr13I	GGNCC	1 cut(s)	1328
Csp6I	GTAC	3 cut(s)	206, 352, 1380
CviAII	CATG	6 cut(s)	73, 251, 716, 1034, 1041, 1076
CviQI	GTAC	3 cut(s)	206, 352, 1380
DdeI	CTNAG	4 cut(s)	368, 822, 1230, 1401
DpnI	GATC	5 cut(s)	35, 284, 386, 1038, 1338
DpnII	GATC	5 cut(s)	33, 282, 384, 1036, 1336
DraI	TTTAAA	1 cut(s)	399
DriI	GACNNNNNGTC	1 cut(s)	649
Eam1104I	CTCTTC	2 cut(s)	394, 1188
Eam1105I	GACNNNNNGTC	1 cut(s)	649
EarI	CTCTTC	2 cut(s)	394, 1188
Eco130I	CCWWGG	2 cut(s)	1191, 1291
Eco147I	AGGCCT	1 cut(s)	756
Eco47I	GGWCC	1 cut(s)	1328
Eco47III	AGCGCT	1 cut(s)	433
Eco57I	CTGAAG	3 cut(s)	579, 936, 1083
EcoO109I	RGGNCCY	1 cut(s)	1328
EcoRII	CCWGG	4 cut(s)	124, 782, 837, 985
EcoT14I	CCWWGG	2 cut(s)	1191, 1291
EcoT22I	ATGCAT	2 cut(s)	697, 1081
ErhI	CCWWGG	2 cut(s)	1191, 1291
FaeI	CATG	6 cut(s)	76, 254, 719, 1037, 1044, 1079
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	1 cut(s)	1341
FatI	CATG	6 cut(s)	72, 250, 715, 1033, 1040, 1075
FauI	CCCGC	1 cut(s)	837
FauNDI	CATATG	1 cut(s)	697
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	6 cut(s)	174, 233, 293, 435, 543, 983
FokI	GGATG	6 cut(s)	333, 350, 757, 819, 1070, 1267
Fsp4HI	GCNGC	6 cut(s)	174, 233, 293, 435, 543, 983
FspBI	CTAG	5 cut(s)	12, 486, 675, 1020, 1146
FspI	TGCGCA	1 cut(s)	954
GlaI	GCGC	2 cut(s)	433, 954
GluI	GCNGC	6 cut(s)	174, 233, 293, 435, 543, 983
GsuI	CTGGAG	1 cut(s)	549
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	756, 782, 1344
HhaI	GCGC	2 cut(s)	434, 955
Hin1II	CATG	6 cut(s)	76, 254, 719, 1037, 1044, 1079
Hin6I	GCGC	2 cut(s)	432, 953
HinP1I	GCGC	2 cut(s)	432, 953
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	2 cut(s)	976, 1094
HinfI	GANTC	3 cut(s)	854, 1238, 1319
HphI	GGTGA	3 cut(s)	153, 395, 455
Hpy166II	GTNNAC	2 cut(s)	643, 713
Hpy188I	TCNGA	6 cut(s)	117, 202, 610, 766, 880, 916
Hpy188III	TCNNGA	2 cut(s)	215, 1034
Hpy8I	GTNNAC	2 cut(s)	643, 713
HpyAV	CCTTC	4 cut(s)	305, 627, 811, 1095
HpyCH4III	ACNGT	4 cut(s)	113, 210, 479, 651
HpyCH4V	TGCA	9 cut(s)	168, 292, 542, 686, 695, 789, 982, 1079, 1373
HpyF10VI	GCNNNNNNNGC	5 cut(s)	420, 429, 692, 753, 975
HpyF3I	CTNAG	4 cut(s)	368, 822, 1230, 1401
Hsp92II	CATG	6 cut(s)	76, 254, 719, 1037, 1044, 1079
HspAI	GCGC	2 cut(s)	432, 953
KflI	GGGWCCC	1 cut(s)	1328
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	5 cut(s)	33, 282, 384, 1036, 1336
LmnI	GCTCC	2 cut(s)	13, 1287
Lsp1109I	GCAGC	6 cut(s)	185, 219, 304, 421, 554, 994
LweI	GCATC	5 cut(s)	779, 841, 1048, 1314, 1395
MaeI	CTAG	5 cut(s)	12, 486, 675, 1020, 1146
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	5 cut(s)	35, 284, 386, 1038, 1338
MboI	GATC	5 cut(s)	33, 282, 384, 1036, 1336
MboII	GAAGA	7 cut(s)	260, 381, 391, 394, 507, 1076, 1175
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	4 cut(s)	287, 1050, 1166, 1258
MlyI	GAGTC	1 cut(s)	1313
MnlI	CCTC	7 cut(s)	248, 282, 746, 767, 1020, 1133, 1191
Mph1103I	ATGCAT	2 cut(s)	697, 1081
MroXI	GAANNNNTTC	2 cut(s)	315, 564
MseI	TTAA	4 cut(s)	398, 572, 630, 743
MspCI	CTTAAG	2 cut(s)	571, 742
MspR9I	CCNGG	4 cut(s)	126, 784, 839, 987
Mva1269I	GAATGC	3 cut(s)	246, 315, 697
MvaI	CCWGG	4 cut(s)	126, 784, 839, 987
MwoI	GCNNNNNNNGC	5 cut(s)	420, 429, 692, 753, 975
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	5 cut(s)	33, 282, 384, 1036, 1336
NlaIII	CATG	6 cut(s)	76, 254, 719, 1037, 1044, 1079
NlaIV	GGNNCC	4 cut(s)	42, 1289, 1329, 1330
NsbI	TGCGCA	1 cut(s)	954
NsiI	ATGCAT	2 cut(s)	697, 1081
NspI	RCATGY	1 cut(s)	719
NspV	TTCGAA	1 cut(s)	319
PagI	TCATGA	1 cut(s)	1033
PceI	AGGCCT	1 cut(s)	756
PciI	ACATGT	1 cut(s)	715
PctI	GAATGC	3 cut(s)	246, 315, 697
PdmI	GAANNNNTTC	2 cut(s)	315, 564
PfeI	GAWTC	2 cut(s)	854, 1238
PkrI	GCNGC	6 cut(s)	175, 234, 294, 436, 544, 984
PleI	GAGTC	1 cut(s)	1313
PpsI	GAGTC	1 cut(s)	1313
PpuMI	RGGWCCY	1 cut(s)	1328
PscI	ACATGT	1 cut(s)	715
Psp5II	RGGWCCY	1 cut(s)	1328
Psp6I	CCWGG	4 cut(s)	124, 782, 837, 985
PspGI	CCWGG	4 cut(s)	124, 782, 837, 985
PspN4I	GGNNCC	4 cut(s)	42, 1289, 1329, 1330
PspPI	GGNCC	1 cut(s)	1328
PspPPI	RGGWCCY	1 cut(s)	1328
PsrI	GAACNNNNNNTAC	2 cut(s)	569, 601
PstI	CTGCAG	1 cut(s)	688
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	3 cut(s)	207, 353, 1381
RsaNI	GTAC	3 cut(s)	206, 352, 1380
SaqAI	TTAA	4 cut(s)	398, 572, 630, 743
SatI	GCNGC	6 cut(s)	174, 233, 293, 435, 543, 983
Sau3AI	GATC	5 cut(s)	33, 282, 384, 1036, 1336
Sau96I	GGNCC	1 cut(s)	1328
SchI	GAGTC	1 cut(s)	1313
ScrFI	CCNGG	4 cut(s)	126, 784, 839, 987
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	5 cut(s)	779, 841, 1048, 1314, 1395
SfcI	CTRYAG	1 cut(s)	684
SfuI	TTCGAA	1 cut(s)	319
SinI	GGWCC	1 cut(s)	1328
SmlI	CTYRAG	3 cut(s)	571, 742, 1011
SmoI	CTYRAG	3 cut(s)	571, 742, 1011
Sse9I	AATT	4 cut(s)	287, 1050, 1166, 1258
SseBI	AGGCCT	1 cut(s)	756
SsiI	CCGC	2 cut(s)	830, 1217
SspMI	CTAG	5 cut(s)	12, 486, 675, 1020, 1146
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	4 cut(s)	124, 782, 837, 985
StyI	CCWWGG	2 cut(s)	1191, 1291
TaaI	ACNGT	4 cut(s)	113, 210, 479, 651
TaqI	TCGA	2 cut(s)	26, 319
TasI	AATT	4 cut(s)	287, 1050, 1166, 1258
TatI	WGTACW	2 cut(s)	205, 1379
TfiI	GAWTC	2 cut(s)	854, 1238
Tru1I	TTAA	4 cut(s)	398, 572, 630, 743
Tru9I	TTAA	4 cut(s)	398, 572, 630, 743
TscAI	CASTG	4 cut(s)	116, 484, 510, 1396
TseI	GCWGC	6 cut(s)	173, 232, 292, 434, 542, 982
TspGWI	ACGGA	5 cut(s)	339, 391, 1267, 1300, 1331
TspRI	CASTG	4 cut(s)	116, 484, 510, 1396
Vha464I	CTTAAG	2 cut(s)	571, 742
VpaK11BI	GGWCC	1 cut(s)	1328
XapI	RAATTY	1 cut(s)	1258
XceI	RCATGY	1 cut(s)	719
XmnI	GAANNNNTTC	2 cut(s)	315, 564
XspI	CTAG	5 cut(s)	12, 486, 675, 1020, 1146
Zsp2I	ATGCAT	2 cut(s)	697, 1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.