Rmu_sc0011918.1_g000003

TSL-kinase interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011918.1
OG0007256
Physical Location & Seq
Forward (+)
20629 .. 21428
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011918.1_g000003.1.cds

Sequence Viewer

Length: 411 bp
atgaaagctcctagacagagaaactcaaaagtgatcaaggttcctataaagggcagagcaagtaaaggtggcatgggggaacaaaaatctacaagtagaactacacagcactgtcatagagaaccggggaaaggtgacgacttcttcaatgaaaaagatgagcatttatcaccttgcaatgcagctaaaggcttggatttggagatttctgatgatgtacagtgttcagaaccaacaaagaagctgcctttttatggcattaatggagggaaaccacttcttcctcattcaaagatcaaattgcagctttttcctgtaaatgaaggcattcgaataggattggaaaaggatggatttcatccgtatttggaactcactcttagagcacggaagaagatttcttctgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.15

Weight (kDa)

9.62

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 3 cut(s) 50, 131, 254
AgsI TTSAA 2 cut(s) 148, 291
AluBI AGCT 4 cut(s) 8, 185, 244, 307
AluI AGCT 4 cut(s) 8, 185, 244, 307
Alw21I GWGCWC 1 cut(s) 388
ApeKI GCWGC 3 cut(s) 182, 244, 304
AseI ATTAAT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 327
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 146, 162
AsuII TTCGAA 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 3 cut(s) 194, 231, 316
BccI CCATC 1 cut(s) 344
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 1 cut(s) 126
BfaI CTAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 183, 245, 305
BlsI GCNGC 3 cut(s) 184, 246, 306
Bme1390I CCNGG 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 125
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 131, 254
Bse3DI GCAATG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 355, 358
BseLI CCNNNNNNNGG 3 cut(s) 50, 131, 254
BseMI GCAATG 1 cut(s) 184
BseXI GCAGC 3 cut(s) 194, 231, 316
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 50, 131, 254
BsmI GAATGC 1 cut(s) 327
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 217
Bsp143I GATC 2 cut(s) 33, 294
BspLI GGNNCC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 184
BsrGI TGTACA 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 2 cut(s) 33, 294
Bst4CI ACNGT 2 cut(s) 113, 222
BstAUI TGTACA 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 380
BstF5I GGATG 2 cut(s) 355, 358
BstKTI GATC 2 cut(s) 36, 297
BstMBI GATC 2 cut(s) 33, 294
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 3 cut(s) 194, 231, 316
BtsCI GGATG 2 cut(s) 355, 358
BtsIMutI CAGTG 2 cut(s) 109, 227
Csp6I GTAC 1 cut(s) 218
CviAII CATG 1 cut(s) 73
CviJI RGCY 5 cut(s) 8, 185, 192, 244, 307
CviKI_1 RGCY 5 cut(s) 8, 185, 192, 244, 307
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 380
DpnI GATC 2 cut(s) 35, 296
DpnII GATC 2 cut(s) 33, 294
FaeI CATG 1 cut(s) 76
FaiI YATR 4 cut(s) 47, 74, 117, 255
FatI CATG 1 cut(s) 72
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 183, 245, 305
FokI GGATG 2 cut(s) 345, 362
Fsp4HI GCNGC 3 cut(s) 183, 245, 305
FspBI CTAG 1 cut(s) 12
GluI GCNGC 3 cut(s) 183, 245, 305
HapII CCGG 1 cut(s) 125
Hin1II CATG 1 cut(s) 76
HpaII CCGG 1 cut(s) 125
HphI GGTGA 2 cut(s) 146, 162
Hpy188I TCNGA 2 cut(s) 211, 229
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 2 cut(s) 113, 222
HpyCH4V TGCA 3 cut(s) 177, 182, 304
HpyF3I CTNAG 1 cut(s) 380
Hsp92II CATG 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 2 cut(s) 33, 294
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 2 cut(s) 138, 327
Lsp1109I GCAGC 3 cut(s) 194, 231, 316
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 35, 296
MboI GATC 2 cut(s) 33, 294
MboII GAAGA 5 cut(s) 136, 272, 393, 403, 406
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 1 cut(s) 299
MnlI CCTC 2 cut(s) 260, 294
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 1 cut(s) 261
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 327
NciI CCSGG 1 cut(s) 126
NdeII GATC 2 cut(s) 33, 294
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 134
NspV TTCGAA 1 cut(s) 331
PctI GAATGC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 327
PkrI GCNGC 3 cut(s) 184, 246, 306
PshBI ATTAAT 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 42
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 183, 245, 305
Sau3AI GATC 2 cut(s) 33, 294
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 388
SetI ASST 8 cut(s) 10, 42, 70, 136, 175, 187, 246, 309
SfuI TTCGAA 1 cut(s) 331
Sse9I AATT 1 cut(s) 299
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 113, 222
TaqI TCGA 1 cut(s) 331
TasI AATT 1 cut(s) 299
TatI WGTACW 1 cut(s) 217
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 116, 227
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 3 cut(s) 182, 244, 304
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 4 cut(s) 17, 165, 336, 347
TspGWI ACGGA 2 cut(s) 351, 403
TspRI CASTG 2 cut(s) 116, 227
VspI ATTAAT 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.