Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007256

Physical Location & Seq

Genomic Coordinates Forward (+)

29733692 .. 29736963

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGAAAGCTCCTAGACAGAGAAACTCAAAAGTGATCAAGGTTCCTATAAAGGGCAGAGCAAGTAAAGGTGGCATGGGGGAACAAAAATCTACAAGTAGAACTACACAACACTGTCATAGAGAACCGGCTAAAGGCTTGGATTTGGAGATTTCTGATGATGTACAGTGTTCAGAACCAACAAAGAAGCTGCCTTTTTATGGCATTAATGGAGGGAAACCACTTCTTCCTCATTCAAAGATCAAATTGCAGCTTTTTCCTGTAAATGAAGGCATTCGAATAGGATTGGAAAAGTTTCGTTTTGTTTTATTCCACTGTAGGATGGATTTCATCCGTATTTGGAACTCACTCTTAGAGCACAAGAAGATTTCTTCTGTTCTAAAGCACCTTATTAGCAAATGGGGCAGTTCAAGGGCTGCTGCTGCTGTTGGTGAGCCGGTTCTATTCCCATACAGGATACAGGACAGTGTATCTAGTAACAGAAGATGGACGTTGAATGATGCTGAAACCAGTGCAGGAGATGTCTATGCAGCTATTGAAAGCCCTGAAATTTTTCGCTTAAGGTATGGTTGGTTCGCTAATGAACCTAAAGCCTCCGAGAAGCCTTCTACATCAGCTTATGGCAAGGTTGACTTACAATCTGAAAGCATACAGAGAGCTACTAGCACCCCTGCAGAGAATGCATATGAAGTAGAGAACCACACTGTGTTAACAAGCAAATATATGGAATCAATAAATGAAAGGACAAATTCAAATGCTGAGAAGATTTCTAATGTAGATGCTGATCTTTTGAGTGATGGCCAGAGGGGGGTGGATGGTAAACATGCACTGGTTGTTGATACTGTAACTGACATAAGCATTGGAGGCCTCCTTTCTGAAGCATCCTTACAGGCTAAGTGCAATAATGGAAATAAAAAACAGAGAGAGAAGGCTAAAACCCCGCATCCTGTGGGCATAAAGAGTGATTCAAAATCATTTGAGTTGTGGGCTGATTGTCCATCTATAAGCATTGGCGGCATCCTGTCTGAAGTATCCTTACAGGGAAAAATCAATCATTTTGGTGCGCAATCAACTATGAGCAATCCAAGCTTGCAGCCAGCTCATTCAATTTATGATAATCCTCAAGGTTCAAGGCCATCTGCTCATGATTCTTGCTTATCAATTTTGGATGCTGAAGAAACCTGTCATGCATTTCCCTCTCAAAAGTTTTCTCTGGGAAAAGATGTTCTGGGTATCGGAGGAAGTTGTGGAGGTTCGAGCCAGAACTCTGGTTTCAAACTGTTCAAGTTTCCTCTTCCAGCCAAGGGTAATAGACTAGCTGAGCTTCCAAAAGACCATGCTCGGCAAGAATCTAATACAGAACGGATGAATTGTTCATATTTGAACAATGATGAACGGAGCCTTGGGCTATCAGGCATCAAATGGACCGACTCTTTGGGGCCCTTTGATCTTGGCCTGCCTGTCTCCCAGAAGCTCTGTAATGCAGAGAGTACAAGCATCAGCGGATTTGTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

No domains found.

Protein Analysis

504

Amino Acids

55.13

Weight (kDa)

8.9

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39380 AT4G39380 AT4G39380 AT4G39380
fragaria_vesca	FvH4_1g23150
malus_domestica	MD01G1014700.v1.1 MD15G1336300.v1.1
prunus_persica	Prupe.6G167500_v2.0.a1 Prupe.6G167500_v2.0.a1 Prupe.6G167500_v2.0.a1 Prupe.6G167500_v2.0.a1
pyrus_communis	pycom01g04650 pycom15g28950
rosa_chinensis	RchiOBHm_Chr2g0117871
rosa_laevigata	RLG00000018381
rosa_multiflora	Rmu_co8235109.1_g000001 Rmu_sc0004968.1_g000005 Rmu_sc0011918.1_g000003
rosa_roxburghii	Rroxscaffold_2G00126140
rosa_rugosa	Rorug02G0214700
rosa_samantha	Rh2AG270900 Rh2BG282500 Rh2DG278800 Rh2DG296700
rosa_wichuraiana	Rw2G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1062
AciI	CCGC	3 cut(s)	938, 1011, 1500
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	2 cut(s)	546, 745
AcuI	CTGAAG	3 cut(s)	894, 1044, 1191
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	2 cut(s)	162, 1489
AfiI	CCNNNNNNNGG	5 cut(s)	50, 131, 197, 805, 1301
AflII	CTTAAG	1 cut(s)	556
AjuI	GAANNNNNNNTTGG	2 cut(s)	1383, 1415
AloI	GAACNNNNNNTCC	4 cut(s)	1206, 1238, 1354, 1386
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	1465
AoxI	GGCC	5 cut(s)	796, 862, 1130, 1436, 1450
ApaI	GGGCCC	1 cut(s)	1440
ApeKI	GCWGC	7 cut(s)	187, 247, 413, 416, 419, 527, 1090
ApoI	RAATTY	2 cut(s)	546, 745
ArsI	GACNNNNNNTTYG	2 cut(s)	1414, 1446
AseI	ATTAAT	1 cut(s)	204
Asp700I	GAANNNNTTC	3 cut(s)	270, 291, 549
AspLEI	GCGC	1 cut(s)	1063
AspS9I	GGNCC	3 cut(s)	1422, 1436, 1437
AsuHPI	GGTGA	1 cut(s)	440
AsuII	TTCGAA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	1422
BaeGI	GKGCMC	1 cut(s)	1440
BalI	TGGCCA	1 cut(s)	798
BanII	GRGCYC	1 cut(s)	1440
BarI	GAAGNNNNNNTAC	4 cut(s)	867, 899, 1017, 1049
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	7 cut(s)	174, 259, 400, 403, 406, 539, 1102
BccI	CCATC	6 cut(s)	313, 477, 788, 806, 1003, 1141
BciVI	GTATCC	2 cut(s)	447, 1039
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	1465
BfaI	CTAG	4 cut(s)	12, 471, 660, 1313
BfmI	CTRYAG	2 cut(s)	313, 669
BfrI	CTTAAG	1 cut(s)	556
BfuI	GTATCC	2 cut(s)	447, 1039
BisI	GCNGC	8 cut(s)	188, 248, 414, 417, 420, 528, 1012, 1091
BlpI	GCTNAGC	1 cut(s)	1317
BlsI	GCNGC	8 cut(s)	189, 249, 415, 418, 421, 529, 1013, 1092
Bme18I	GGWCC	1 cut(s)	1422
BmgT120I	GGNCC	3 cut(s)	1422, 1436, 1437
BmiI	GGNNCC	4 cut(s)	42, 1397, 1437, 1438
BmsI	GCATC	8 cut(s)	487, 766, 887, 949, 1023, 1156, 1422, 1503
Bpu1102I	GCTNAGC	1 cut(s)	1317
Bpu14I	TTCGAA	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	1104
BsaBI	GATNNNNATC	1 cut(s)	780
BsaJI	CCNNGG	2 cut(s)	1299, 1399
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 131, 197, 805, 1301
Bse118I	RCCGGY	2 cut(s)	124, 433
Bse1I	ACTGG	2 cut(s)	507, 831
Bse8I	GATNNNNATC	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	1299, 1399
BseGI	GGATG	8 cut(s)	324, 327, 817, 878, 940, 1014, 1171, 1368
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	5 cut(s)	50, 131, 197, 805, 1301
BseMII	CTCAG	2 cut(s)	747, 1308
BseNI	ACTGG	2 cut(s)	507, 831
BseSI	GKGCMC	1 cut(s)	1440
BseXI	GCAGC	7 cut(s)	174, 259, 400, 403, 406, 539, 1102
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	5 cut(s)	798, 864, 1132, 1438, 1452
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	125, 434
BslI	CCNNNNNNNGG	5 cut(s)	50, 131, 197, 805, 1301
BsmAI	GTCTC	1 cut(s)	1465
BsmI	GAATGC	2 cut(s)	270, 682
BsnI	GGCC	5 cut(s)	798, 864, 1132, 1438, 1452
Bsp119I	TTCGAA	1 cut(s)	274
Bsp120I	GGGCCC	1 cut(s)	1436
Bsp1286I	GDGCHC	2 cut(s)	357, 1440
Bsp1407I	TGTACA	1 cut(s)	160
Bsp143I	GATC	4 cut(s)	33, 237, 781, 1444
Bsp1720I	GCTNAGC	1 cut(s)	1317
BspACI	CCGC	3 cut(s)	938, 1011, 1500
BspANI	GGCC	5 cut(s)	798, 864, 1132, 1438, 1452
BspCNI	CTCAG	2 cut(s)	748, 1309
BspHI	TCATGA	1 cut(s)	1141
BspLI	GGNNCC	4 cut(s)	42, 1397, 1437, 1438
BspMAI	CTGCAG	1 cut(s)	673
BspT104I	TTCGAA	1 cut(s)	274
BspTI	CTTAAG	1 cut(s)	556
BsrFI	RCCGGY	2 cut(s)	124, 433
BsrGI	TGTACA	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	507, 831
BssAI	RCCGGY	2 cut(s)	124, 433
BssECI	CCNNGG	2 cut(s)	1299, 1399
BssMI	GATC	4 cut(s)	33, 237, 781, 1444
BssT1I	CCWWGG	2 cut(s)	1299, 1399
Bst4CI	ACNGT	7 cut(s)	113, 165, 314, 464, 703, 841, 1278
Bst6I	CTCTTC	1 cut(s)	1296
BstAFI	CTTAAG	1 cut(s)	556
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstAUI	TGTACA	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	1088, 1095, 1454
BstDEI	CTNAG	4 cut(s)	349, 756, 891, 1317
BstF5I	GGATG	8 cut(s)	324, 327, 817, 878, 940, 1014, 1171, 1368
BstHHI	GCGC	1 cut(s)	1063
BstKTI	GATC	4 cut(s)	36, 240, 784, 1447
BstMAI	GTCTC	1 cut(s)	1465
BstMBI	GATC	4 cut(s)	33, 237, 781, 1444
BstMWI	GCNNNNNNNGC	6 cut(s)	399, 419, 677, 861, 1011, 1083
BstNSI	RCATGY	1 cut(s)	824
BstSFI	CTRYAG	2 cut(s)	313, 669
BstSLI	GKGCMC	1 cut(s)	1440
BstV1I	GCAGC	7 cut(s)	174, 259, 400, 403, 406, 539, 1102
BstXI	CCANNNNNNTGG	1 cut(s)	1265
BsuI	GTATCC	2 cut(s)	447, 1039
BsuRI	GGCC	5 cut(s)	798, 864, 1132, 1438, 1452
BtsCI	GGATG	8 cut(s)	324, 327, 817, 878, 940, 1014, 1171, 1368
BtsIMutI	CAGTG	7 cut(s)	109, 170, 310, 469, 514, 699, 824
Cac8I	GCNNGC	3 cut(s)	1088, 1095, 1454
CciI	TCATGA	1 cut(s)	1141
CfoI	GCGC	1 cut(s)	1063
Cfr10I	RCCGGY	2 cut(s)	124, 433
Cfr13I	GGNCC	3 cut(s)	1422, 1436, 1437
Csp6I	GTAC	2 cut(s)	161, 1488
CviAII	CATG	5 cut(s)	73, 821, 1142, 1184, 1334
CviQI	GTAC	2 cut(s)	161, 1488
DdeI	CTNAG	4 cut(s)	349, 756, 891, 1317
DpnI	GATC	4 cut(s)	35, 239, 783, 1446
DpnII	GATC	4 cut(s)	33, 237, 781, 1444
DraIII	CACNNNGTG	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	1 cut(s)	1296
EarI	CTCTTC	1 cut(s)	1296
Eco130I	CCWWGG	2 cut(s)	1299, 1399
Eco147I	AGGCCT	1 cut(s)	864
Eco24I	GRGCYC	1 cut(s)	1440
Eco47I	GGWCC	1 cut(s)	1422
Eco57I	CTGAAG	3 cut(s)	894, 1044, 1191
EcoO109I	RGGNCCY	2 cut(s)	1436, 1437
EcoT14I	CCWWGG	2 cut(s)	1299, 1399
EcoT22I	ATGCAT	2 cut(s)	682, 1189
EcoT38I	GRGCYC	1 cut(s)	1440
ErhI	CCWWGG	2 cut(s)	1299, 1399
FaeI	CATG	5 cut(s)	76, 824, 1145, 1187, 1337
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FatI	CATG	5 cut(s)	72, 820, 1141, 1183, 1333
FauI	CCCGC	1 cut(s)	945
FauNDI	CATATG	1 cut(s)	682
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	8 cut(s)	188, 248, 414, 417, 420, 528, 1012, 1091
FokI	GGATG	8 cut(s)	314, 331, 824, 865, 927, 1001, 1178, 1375
FriOI	GRGCYC	1 cut(s)	1440
Fsp4HI	GCNGC	8 cut(s)	188, 248, 414, 417, 420, 528, 1012, 1091
FspBI	CTAG	4 cut(s)	12, 471, 660, 1313
FspI	TGCGCA	1 cut(s)	1062
GlaI	GCGC	1 cut(s)	1062
GluI	GCNGC	8 cut(s)	188, 248, 414, 417, 420, 528, 1012, 1091
HaeIII	GGCC	5 cut(s)	798, 864, 1132, 1438, 1452
HapII	CCGG	2 cut(s)	125, 434
HhaI	GCGC	1 cut(s)	1063
Hin1II	CATG	5 cut(s)	76, 824, 1145, 1187, 1337
Hin6I	GCGC	1 cut(s)	1061
HinP1I	GCGC	1 cut(s)	1061
HincII	GTYRAC	2 cut(s)	628, 708
HindII	GTYRAC	2 cut(s)	628, 708
HindIII	AAGCTT	1 cut(s)	1084
HinfI	GANTC	5 cut(s)	725, 962, 1145, 1346, 1427
HpaI	GTTAAC	1 cut(s)	708
HpaII	CCGG	2 cut(s)	125, 434
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	628, 708, 818
Hpy188I	TCNGA	7 cut(s)	154, 172, 595, 640, 874, 1024, 1235
Hpy188III	TCNNGA	1 cut(s)	1142
Hpy8I	GTNNAC	3 cut(s)	628, 708, 818
HpyAV	CCTTC	3 cut(s)	260, 612, 919
HpyCH4III	ACNGT	7 cut(s)	113, 165, 314, 464, 703, 841, 1278
HpyCH4IV	ACGT	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	6 cut(s)	399, 419, 677, 861, 1011, 1083
HpyF3I	CTNAG	4 cut(s)	349, 756, 891, 1317
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	5 cut(s)	76, 824, 1145, 1187, 1337
HspAI	GCGC	1 cut(s)	1061
Ksp22I	TGATCA	1 cut(s)	33
KspAI	GTTAAC	1 cut(s)	708
Kzo9I	GATC	4 cut(s)	33, 237, 781, 1444
LmnI	GCTCC	2 cut(s)	13, 1395
Lsp1109I	GCAGC	7 cut(s)	174, 259, 400, 403, 406, 539, 1102
LweI	GCATC	8 cut(s)	487, 766, 887, 949, 1023, 1156, 1422, 1503
MaeI	CTAG	4 cut(s)	12, 471, 660, 1313
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	2 cut(s)	473, 841
MalI	GATC	4 cut(s)	35, 239, 783, 1446
MboI	GATC	4 cut(s)	33, 237, 781, 1444
MboII	GAAGA	7 cut(s)	215, 360, 373, 492, 772, 1184, 1283
MhlI	GDGCHC	2 cut(s)	357, 1440
MlsI	TGGCCA	1 cut(s)	798
MluCI	AATT	6 cut(s)	242, 546, 745, 1104, 1158, 1366
MluNI	TGGCCA	1 cut(s)	798
MlyI	GAGTC	1 cut(s)	1421
Mox20I	TGGCCA	1 cut(s)	798
Mph1103I	ATGCAT	2 cut(s)	682, 1189
MroXI	GAANNNNTTC	3 cut(s)	270, 291, 549
MscI	TGGCCA	1 cut(s)	798
MseI	TTAA	4 cut(s)	204, 557, 707, 1509
MslI	CAYNNNNRTG	1 cut(s)	1056
Msp20I	TGGCCA	1 cut(s)	798
MspA1I	CMGCKG	1 cut(s)	1500
MspCI	CTTAAG	1 cut(s)	556
MspI	CCGG	2 cut(s)	125, 434
Mva1269I	GAATGC	2 cut(s)	270, 682
MwoI	GCNNNNNNNGC	6 cut(s)	399, 419, 677, 861, 1011, 1083
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	4 cut(s)	33, 237, 781, 1444
NlaIII	CATG	5 cut(s)	76, 824, 1145, 1187, 1337
NlaIV	GGNNCC	4 cut(s)	42, 1397, 1437, 1438
NmeAIII	GCCGAG	1 cut(s)	1318
NsbI	TGCGCA	1 cut(s)	1062
NsiI	ATGCAT	2 cut(s)	682, 1189
NspI	RCATGY	1 cut(s)	824
NspV	TTCGAA	1 cut(s)	274
PagI	TCATGA	1 cut(s)	1141
PceI	AGGCCT	1 cut(s)	864
PctI	GAATGC	2 cut(s)	270, 682
PdmI	GAANNNNTTC	3 cut(s)	270, 291, 549
PfeI	GAWTC	4 cut(s)	725, 962, 1145, 1346
PkrI	GCNGC	8 cut(s)	189, 249, 415, 418, 421, 529, 1013, 1092
PleI	GAGTC	1 cut(s)	1421
PpsI	GAGTC	1 cut(s)	1421
PshBI	ATTAAT	1 cut(s)	204
PspN4I	GGNNCC	4 cut(s)	42, 1397, 1437, 1438
PspOMI	GGGCCC	1 cut(s)	1436
PspPI	GGNCC	3 cut(s)	1422, 1436, 1437
PsrI	GAACNNNNNNTAC	2 cut(s)	554, 586
PstI	CTGCAG	1 cut(s)	673
RsaI	GTAC	2 cut(s)	162, 1489
RsaNI	GTAC	2 cut(s)	161, 1488
RseI	CAYNNNNRTG	1 cut(s)	1056
SaqAI	TTAA	4 cut(s)	204, 557, 707, 1509
SatI	GCNGC	8 cut(s)	188, 248, 414, 417, 420, 528, 1012, 1091
Sau3AI	GATC	4 cut(s)	33, 237, 781, 1444
Sau96I	GGNCC	3 cut(s)	1422, 1436, 1437
SchI	GAGTC	1 cut(s)	1421
SduI	GDGCHC	2 cut(s)	357, 1440
SfaNI	GCATC	8 cut(s)	487, 766, 887, 949, 1023, 1156, 1422, 1503
SfcI	CTRYAG	2 cut(s)	313, 669
SfuI	TTCGAA	1 cut(s)	274
SinI	GGWCC	1 cut(s)	1422
SmiMI	CAYNNNNRTG	1 cut(s)	1056
SmlI	CTYRAG	2 cut(s)	556, 1119
SmoI	CTYRAG	2 cut(s)	556, 1119
Sse9I	AATT	6 cut(s)	242, 546, 745, 1104, 1158, 1366
SseBI	AGGCCT	1 cut(s)	864
SsiI	CCGC	3 cut(s)	938, 1011, 1500
SspMI	CTAG	4 cut(s)	12, 471, 660, 1313
StuI	AGGCCT	1 cut(s)	864
StyI	CCWWGG	2 cut(s)	1299, 1399
TaaI	ACNGT	7 cut(s)	113, 165, 314, 464, 703, 841, 1278
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	2 cut(s)	274, 1253
TaqII	GACCGA	1 cut(s)	1439
TasI	AATT	6 cut(s)	242, 546, 745, 1104, 1158, 1366
TatI	WGTACW	2 cut(s)	160, 1487
TauI	GCSGC	1 cut(s)	1014
TfiI	GAWTC	4 cut(s)	725, 962, 1145, 1346
Tru1I	TTAA	4 cut(s)	204, 557, 707, 1509
Tru9I	TTAA	4 cut(s)	204, 557, 707, 1509
TscAI	CASTG	7 cut(s)	116, 170, 317, 469, 514, 706, 831
TseI	GCWGC	7 cut(s)	187, 247, 413, 416, 419, 527, 1090
TspDTI	ATGAA	9 cut(s)	17, 279, 316, 594, 699, 750, 1362, 1379, 1404
TspGWI	ACGGA	3 cut(s)	320, 1375, 1408
TspRI	CASTG	7 cut(s)	116, 170, 317, 469, 514, 706, 831
Vha464I	CTTAAG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	1422
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	2 cut(s)	546, 745
XceI	RCATGY	1 cut(s)	824
XmnI	GAANNNNTTC	3 cut(s)	270, 291, 549
XspI	CTAG	4 cut(s)	12, 471, 660, 1313
Zsp2I	ATGCAT	2 cut(s)	682, 1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.