Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006666

Physical Location & Seq

Genomic Coordinates Reverse (-)

16517223 .. 16529178

Gene Structure 11956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24710.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

ATGGCTGCCACTGCCAGATGCTCTTCACCTCCGTCACCGGCCACCTCATGGAGCTCGAATTCGAAGACCGCTTCCGCAAGTGGCACTCCTGCGATCCCGCCCTCCTCTTCCAGGCCCCCGTCCGCAAGTTCGTCCCCGAGCAAAGGTAGAGCCAAGTTCACGCATATCGTACTGGGAGCATTACCTGATATCAATTTATTATACTGTGGGATGCCTGTTGGAGTTATGAGGAAGTTTATTGTTGGAAATTACATGGACAAGTTGGATATTAAAAGGACATTAGAGGAGGAAGCTAGGAATTGCCAGTGGCTTGTGTTATGGCTTGACTGTGATAGAGAAGGAGAGAACATTGCATTTGAAGTCATAGATGTCTGCACATCTGTAAATCGTCATCTTACCATTAAGAGGGCTCGTTTCTCAGCTTTGATTGACAGGGATATCCATCACGCAGTGCAAAATCTTGACAATGCAAACAAATACTTTGCTGATGCAGTGGATGCTAGGCAAGAAATAGATCTACGAATTGGTGCTTCATTTACCAGGTTTCAGACTATGCTCCTGAGAGATGCTTTTGTTATTGATTCTGCTACGGATGACAGAAACCTTGTTCTAAGTTATGGTCCTTGTCAGTTCCCTACACTTGGCTTTATCGTGGAACGGTACTGGGAGATACAGTCACATGAGCCGGAGGAATTTTGGACCATTAACTGTTCACATAGATCAGATGAAGGAACTGCAACATTCGGTTGGATGCGTGGCCATCTTTTTGATCATGCTTGTGCTGTCATAATCTATGAAATGTGCGTTGAGGATCCTATTGCAACTGTCACAAAGGTCAGACAACAGGAGAAGCCGAAGTATCCTCCGTATCCTTTGAATACCATTGAGCTTGAAAAGCGTGCCTCGAGATACTTCCGAATGAGTTCTGAACATACTATGAAGGTAGCAGAAGAGCTTTACCAAGCTGGTTTTATCAGTTATCCTCGAACAGAGACCGATGGCTTCTCTCCAAGGACTGATTTGCATGCAATTGTACAAGAACAACAAGGGCATCCTGGATGGGGATCATATGCACAACGATTGTTGGACCCTGCTTCTGGGCTTTGGAGAAACCCTAGTAGTGGTGGACATGATGACAAGGCCCATCCACCTATTCACCCAACTAAATTTTCTGCTGGAGAATCGAATTGGAGTCAAGATCACAATCGACTGTATGAGCTGGTTGTTCGCCATTTTCTGGCATGTGTCTCACAGCCAGCTGTTGGGGCCGAAACTACTGTTGAAATAGATATTGCTGGGGAAATGTTCTCTGCATCTGGGAGAGTGATATTAGCGAAAAATTACTTAGATGTGTATCGCTTTGAATCATGGGGAGGTTCACTGCTACCAACATATGCCGTTGGACAACAGTTTATGCCAACAACGTTGACTCTAGATTCAGGAGTTACTAGGCCTCCACCACTTTTAAGTGAAGCTGATTTGCTGGGTTGTATGGACAAGGAGGGCATTGGTACAGATGCAACAATGCATGATCACATTAAGAAACTGCTTGATCGTTTTTACGCAACCAAGGACGCGAATACTCGCTTCTCACCAACCAATCTGGGTGAAGCACTGGTGATGGGATATGATGACATGGGATATAAACTTTGGAAACCCTACCTTAGAGCTGTTATGGAGCGTGACATGAAAGCAGTTAGTGAAGGTAATAAGAGCAAAGCTGAAGTTTTGGAAACTTGCTTGCAGCAAATGAAAGGGTGCTTCCTTGATGCGAGGCAGAATAAAGTAAAACTTTTTGAAGCCATGGCAGTGTTCTTTGAAAGATCAAATAGACCTGGCGGAGATGATCAGCATACATCTGGAGAGTTCATTCGGCGATGTGGACTCTGCCAGGAAGCAGATATGGTGCTCAGGAAAAATCGGGATGGAAATTTTATGGTGGGATGTATGGGTTATCCTCAGTGTAGGAATGCTATCTGGCTCCCTGGATCTGTATCAGAAGCAGTTGCAACAACTAATATTTGCAATTCATGCACTCCAGGTCCTGTTCACTTGATTCAATTTACATTTCGGCGGCTGGAAATACCACCAAATTATAGTACCAACCATTTGGGTTGCATTGGTGGGTGTGATGAGATTCTTAGACAGTTAACGGAAATATGTGGAACTGGTTCTCGGTCTGCAGCGAGAGGGCGAGGACCAACAACATCCAGCAATGTTCAACAAAATAATACCAGGCAGGGTGCTTGCATATATTGCCACCAATCAGGGCATTCTTCGGGCGATTGCCCTTCCCAATCTTCAGGCCCTCGAAGTGTTAGGCCTCGAACAATGAATGCACAAAGTGGGGAAATATCAGTCTCATGTACTACATGTGGTGCACCTTGTGTTCTACGAACTGCTAATACCACACAGAATAGAGGAAGAAAATTCTACAAATGCCCATCACAGGAGTGCAACTTCTTTGTATGGGAAGATAATGTCAGCAATGGGAATGGCGGAAGAGGTTTTCAGCGTGCCAATGTTAGTGCTGGGAGGGGTGCCGGGGGCAGAGGTTCAGGGGGCAGAGGTGCTCAGGGTGCAGGACATGCTACTGGTGGGACTTTTGTGTCAGCAACTGGTGATCCCAATTCTGGTAGGAGGTGTTTTGTTTGTGGAGATCCGTCACACTTCGCAAATGTTTGCCCAAACCGTGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003917 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0016604 GO:0016605 GO:0016853 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim zf-C4_Topoisom zf-CCHC zf-GRF

Protein Analysis

901

Amino Acids

99.11

Weight (kDa)

7.67

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Toprim	PF01751	5 - 149	1.2e-12	Toprim domain
Topoisom_bac	PF01131	167 - 585	5.2e-108	DNA topoisomerase
Zn_ribbon_Top1	PF01396	633 - 670	2.7e-08	Topoisomerase DNA binding C4 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63920
fragaria_vesca	FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710
malus_domestica	MD15G1134700.v1.1
prunus_persica	Prupe.4G275500_v2.0.a1 Prupe.4G275500_v2.0.a1
pyrus_communis	pycom15g12120 pycom15g12150
rosa_chinensis	RchiOBHm_Chr2g0122231
rosa_laevigata	RLG00000018671
rosa_roxburghii	Rroxscaffold_2G00121760
rosa_rugosa	Rorug02G0237200
rosa_samantha	Rh2AG296000 Rh2BG304900 Rh2CG283300 Rh2DG320000
rosa_wichuraiana	Rw1G008520 Rw2G023570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2608
AccB1I	GGYRCC	1 cut(s)	2540
AccB7I	CCANNNNNTGG	4 cut(s)	48, 1237, 1262, 2693
AccII	CGCG	1 cut(s)	1577
AciI	CCGC	7 cut(s)	69, 75, 98, 123, 1839, 2074, 2499
AclI	AACGTT	1 cut(s)	1424
AclWI	GGATC	7 cut(s)	88, 806, 819, 1072, 1996, 2618, 2654
AcoI	YGGCCR	2 cut(s)	39, 757
AcsI	RAATTY	5 cut(s)	58, 692, 1166, 1930, 2429
AcuI	CTGAAG	2 cut(s)	1743, 2286
AdeI	CACNNNGTG	3 cut(s)	451, 2345, 2387
AfaI	GTAC	6 cut(s)	171, 662, 1035, 1513, 2101, 2368
AflIII	ACRYGT	1 cut(s)	2372
AgsI	TTSAA	9 cut(s)	359, 877, 893, 1283, 1364, 1799, 1820, 2060, 2222
AjnI	CCWGG	8 cut(s)	110, 539, 1054, 1834, 1890, 1984, 2038, 2234
AjuI	GAANNNNNNNTTGG	2 cut(s)	1153, 1185
AleI	CACNNNNGTG	1 cut(s)	2452
Alw21I	GWGCWC	4 cut(s)	56, 1911, 2383, 2575
Alw26I	GTCTC	3 cut(s)	986, 1252, 2365
Alw44I	GTGCAC	1 cut(s)	2379
AlwI	GGATC	7 cut(s)	88, 806, 819, 1072, 1996, 2618, 2654
AlwNI	CAGNNNCTG	2 cut(s)	2045, 2618
Ama87I	CYCGRG	2 cut(s)	136, 904
AoxI	GGCC	8 cut(s)	39, 113, 757, 1140, 1266, 1451, 2305, 2321
ApaLI	GTGCAC	1 cut(s)	2379
ApeKI	GCWGC	3 cut(s)	5, 1744, 2183
ApoI	RAATTY	5 cut(s)	58, 692, 1166, 1930, 2429
Asp700I	GAANNNNTTC	2 cut(s)	922, 2170
AspS9I	GGNCC	9 cut(s)	114, 620, 699, 1087, 1141, 1266, 2042, 2198, 2306
AsuC2I	CCSGG	1 cut(s)	2545
AsuHPI	GGTGA	7 cut(s)	18, 27, 1148, 1584, 1619, 1630, 2633
AsuII	TTCGAA	1 cut(s)	62
AvaI	CYCGRG	2 cut(s)	136, 904
AvaII	GGWCC	5 cut(s)	620, 699, 1087, 2042, 2198
BaeGI	GKGCMC	1 cut(s)	2383
BalI	TGGCCA	1 cut(s)	759
BamHI	GGATCC	1 cut(s)	811
BanI	GGYRCC	1 cut(s)	2540
BanII	GRGCYC	2 cut(s)	56, 412
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	4 cut(s)	56, 1911, 2383, 2575
BbvI	GCAGC	2 cut(s)	1756, 2195
BccI	CCATC	8 cut(s)	450, 768, 992, 1053, 1152, 1615, 1919, 2452
BceAI	ACGGC	1 cut(s)	1382
BciT130I	CCWGG	8 cut(s)	112, 541, 1056, 1836, 1892, 1986, 2040, 2236
BciVI	GTATCC	2 cut(s)	870, 879
BclI	TGATCA	3 cut(s)	769, 1531, 1846
BcnI	CCSGG	1 cut(s)	2545
BcoDI	GTCTC	3 cut(s)	986, 1252, 2365
BfaI	CTAG	5 cut(s)	294, 501, 1116, 1433, 1449
BfmI	CTRYAG	1 cut(s)	2181
BfuI	GTATCC	2 cut(s)	870, 879
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	4 cut(s)	6, 1745, 2075, 2184
BlsI	GCNGC	4 cut(s)	7, 1746, 2076, 2185
Bme1390I	CCNGG	9 cut(s)	112, 541, 1056, 1836, 1892, 1986, 2040, 2236, 2545
Bme18I	GGWCC	5 cut(s)	620, 699, 1087, 2042, 2198
BmeT110I	CYCGRG	2 cut(s)	136, 904
BmgT120I	GGNCC	9 cut(s)	114, 620, 699, 1087, 1141, 1266, 2042, 2198, 2306
BmiI	GGNNCC	6 cut(s)	116, 813, 1089, 1267, 1982, 2542
BmrFI	CCNGG	9 cut(s)	112, 541, 1056, 1836, 1892, 1986, 2040, 2236, 2545
BmrI	ACTGGG	2 cut(s)	182, 673
BmuI	ACTGGG	2 cut(s)	182, 673
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	3 cut(s)	1197, 1881, 2022
Bpu10I	CCTNAGC	2 cut(s)	1910, 2574
Bpu14I	TTCGAA	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	2545
BsaBI	GATNNNNATC	5 cut(s)	441, 1063, 1203, 1353, 1993
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	6 cut(s)	1010, 1569, 1803, 1984, 2544, 2692
BsaXI	ACNNNNNCTCC	4 cut(s)	659, 689, 1438, 1468
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	7 cut(s)	177, 304, 668, 1620, 2173, 2599, 2623
Bse3DI	GCAATG	3 cut(s)	348, 2221, 2494
Bse8I	GATNNNNATC	5 cut(s)	441, 1063, 1203, 1353, 1993
BseBI	CCWGG	8 cut(s)	112, 541, 1056, 1836, 1892, 1986, 2040, 2236
BseDI	CCNNGG	6 cut(s)	1010, 1569, 1803, 1984, 2544, 2692
BseJI	GATNNNNATC	5 cut(s)	441, 1063, 1203, 1353, 1993
BseMI	GCAATG	3 cut(s)	348, 2221, 2494
BseMII	CTCAG	5 cut(s)	432, 551, 1924, 1973, 2588
BseNI	ACTGG	7 cut(s)	177, 304, 668, 1620, 2173, 2599, 2623
BseRI	GAGGAG	2 cut(s)	94, 299
BseSI	GKGCMC	1 cut(s)	2383
BseXI	GCAGC	2 cut(s)	1756, 2195
BseYI	CCCAGC	3 cut(s)	1295, 1483, 2531
BsgI	GTGCAG	2 cut(s)	358, 2601
Bsh1236I	CGCG	1 cut(s)	1577
BshFI	GGCC	8 cut(s)	41, 115, 759, 1142, 1268, 1453, 2307, 2323
BshNI	GGYRCC	1 cut(s)	2540
BsiHKAI	GWGCWC	4 cut(s)	56, 1911, 2383, 2575
BsiHKCI	CYCGRG	2 cut(s)	136, 904
BsiSI	CCGG	3 cut(s)	38, 686, 2544
BslFI	GGGAC	2 cut(s)	118, 2614
BsmAI	GTCTC	3 cut(s)	986, 1252, 2365
BsmFI	GGGAC	2 cut(s)	118, 2614
BsmI	GAATGC	3 cut(s)	1975, 2272, 2341
BsnI	GGCC	8 cut(s)	41, 115, 759, 1142, 1268, 1453, 2307, 2323
Bso31I	GGTCTC	1 cut(s)	986
BsoBI	CYCGRG	2 cut(s)	136, 904
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	5 cut(s)	56, 412, 1911, 2383, 2575
Bsp1407I	TGTACA	1 cut(s)	1033
Bsp19I	CCATGG	1 cut(s)	1803
BspACI	CCGC	7 cut(s)	69, 75, 98, 123, 1839, 2074, 2499
BspANI	GGCC	8 cut(s)	41, 115, 759, 1142, 1268, 1453, 2307, 2323
BspCNI	CTCAG	5 cut(s)	431, 552, 1923, 1972, 2587
BspFNI	CGCG	1 cut(s)	1577
BspLI	GGNNCC	6 cut(s)	116, 813, 1089, 1267, 1982, 2542
BspMAI	CTGCAG	1 cut(s)	2185
BspPI	GGATC	7 cut(s)	88, 806, 819, 1072, 1996, 2618, 2654
BspQI	GCTCTTC	2 cut(s)	28, 945
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	2540
BspTNI	GGTCTC	1 cut(s)	986
BsrDI	GCAATG	3 cut(s)	348, 2221, 2494
BsrFI	RCCGGY	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	1033
BsrI	ACTGG	7 cut(s)	177, 304, 668, 1620, 2173, 2599, 2623
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	6 cut(s)	1010, 1569, 1803, 1984, 2544, 2692
BssT1I	CCWWGG	3 cut(s)	1010, 1569, 1803
Bst2UI	CCWGG	8 cut(s)	112, 541, 1056, 1836, 1892, 1986, 2040, 2236
Bst6I	CTCTTC	4 cut(s)	28, 112, 945, 2497
BstAPI	GCANNNNNTGC	4 cut(s)	497, 2031, 2256, 2588
BstAUI	TGTACA	1 cut(s)	1033
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	6 cut(s)	900, 1026, 1257, 1742, 2248, 2517
BstDEI	CTNAG	9 cut(s)	418, 560, 611, 1345, 1664, 1910, 1959, 2141, 2574
BstDSI	CCRYGG	2 cut(s)	1803, 2692
BstENI	CCTNNNNNAGG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	1577
BstMAI	GTCTC	3 cut(s)	986, 1252, 2365
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 497, 895, 1265, 2031, 2256, 2579, 2588
BstNI	CCWGG	8 cut(s)	112, 541, 1056, 1836, 1892, 1986, 2040, 2236
BstNSI	RCATGY	4 cut(s)	1028, 1245, 2376, 2591
BstSCI	CCNGG	9 cut(s)	110, 539, 1054, 1834, 1890, 1984, 2038, 2234, 2543
BstSFI	CTRYAG	1 cut(s)	2181
BstSLI	GKGCMC	1 cut(s)	2383
BstUI	CGCG	1 cut(s)	1577
BstV1I	GCAGC	2 cut(s)	1756, 2195
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	4 cut(s)	514, 811, 1988, 2659
BstXI	CCANNNNNNTGG	1 cut(s)	2110
BstYI	RGATCY	4 cut(s)	514, 811, 1988, 2659
BsuI	GTATCC	2 cut(s)	870, 879
BsuRI	GGCC	8 cut(s)	41, 115, 759, 1142, 1268, 1453, 2307, 2323
BtgI	CCRYGG	2 cut(s)	1803, 2692
BtgZI	GCGATG	1 cut(s)	1891
BtsI	GCAGTG	5 cut(s)	9, 456, 498, 1379, 1815
BtsIMutI	CAGTG	8 cut(s)	9, 311, 456, 498, 1379, 1613, 1815, 1967
Cac8I	GCNNGC	6 cut(s)	900, 1026, 1257, 1742, 2248, 2517
CaiI	CAGNNNCTG	2 cut(s)	2045, 2618
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	9 cut(s)	114, 620, 699, 1087, 1141, 1266, 2042, 2198, 2306
CseI	GACGC	1 cut(s)	1583
CsiI	ACCWGGT	1 cut(s)	539
Csp6I	GTAC	6 cut(s)	170, 661, 1034, 1512, 2100, 2367
CviQI	GTAC	6 cut(s)	170, 661, 1034, 1512, 2100, 2367
DdeI	CTNAG	9 cut(s)	418, 560, 611, 1345, 1664, 1910, 1959, 2141, 2574
DraIII	CACNNNGTG	3 cut(s)	451, 2345, 2387
DrdI	GACNNNNNNGTC	1 cut(s)	2608
DseDI	GACNNNNNNGTC	1 cut(s)	2608
EaeI	YGGCCR	2 cut(s)	39, 757
Eam1104I	CTCTTC	4 cut(s)	28, 112, 945, 2497
EarI	CTCTTC	4 cut(s)	28, 112, 945, 2497
EciI	GGCGGA	2 cut(s)	1854, 2514
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	3 cut(s)	1010, 1569, 1803
Eco147I	AGGCCT	2 cut(s)	1453, 2323
Eco24I	GRGCYC	2 cut(s)	56, 412
Eco31I	GGTCTC	1 cut(s)	986
Eco32I	GATATC	2 cut(s)	190, 439
Eco47I	GGWCC	5 cut(s)	620, 699, 1087, 2042, 2198
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	1743, 2286
Eco88I	CYCGRG	2 cut(s)	136, 904
EcoICRI	GAGCTC	1 cut(s)	54
EcoNI	CCTNNNNNAGG	1 cut(s)	109
EcoO109I	RGGNCCY	3 cut(s)	114, 2042, 2306
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	8 cut(s)	110, 539, 1054, 1834, 1890, 1984, 2038, 2234
EcoRV	GATATC	2 cut(s)	190, 439
EcoT14I	CCWWGG	3 cut(s)	1010, 1569, 1803
EcoT22I	ATGCAT	1 cut(s)	1530
EcoT38I	GRGCYC	2 cut(s)	56, 412
ErhI	CCWWGG	3 cut(s)	1010, 1569, 1803
FalI	AAGNNNNNCTT	2 cut(s)	1776, 1808
FaqI	GGGAC	2 cut(s)	118, 2614
FauI	CCCGC	1 cut(s)	105
FauNDI	CATATG	2 cut(s)	1069, 1393
FbaI	TGATCA	3 cut(s)	769, 1531, 1846
Fnu4HI	GCNGC	4 cut(s)	6, 1745, 2075, 2184
FriOI	GRGCYC	2 cut(s)	56, 412
Fsp4HI	GCNGC	4 cut(s)	6, 1745, 2075, 2184
FspBI	CTAG	5 cut(s)	294, 501, 1116, 1433, 1449
GluI	GCNGC	4 cut(s)	6, 1745, 2075, 2184
GsaI	CCCAGC	3 cut(s)	1299, 1487, 2535
GsuI	CTGGAG	3 cut(s)	1197, 1881, 2022
HaeIII	GGCC	8 cut(s)	41, 115, 759, 1142, 1268, 1453, 2307, 2323
HapII	CCGG	3 cut(s)	38, 686, 2544
HgaI	GACGC	1 cut(s)	1583
HincII	GTYRAC	2 cut(s)	1428, 2151
HindII	GTYRAC	2 cut(s)	1428, 2151
HinfI	GANTC	9 cut(s)	581, 1181, 1192, 1364, 1429, 1436, 1884, 2056, 2137
HpaI	GTTAAC	1 cut(s)	2151
HpaII	CCGG	3 cut(s)	38, 686, 2544
HphI	GGTGA	7 cut(s)	18, 27, 1148, 1584, 1619, 1630, 2633
Hpy166II	GTNNAC	9 cut(s)	159, 713, 1127, 1379, 1428, 1883, 2050, 2151, 2381
Hpy188I	TCNGA	6 cut(s)	549, 724, 839, 917, 928, 1999
Hpy188III	TCNNGA	9 cut(s)	461, 559, 906, 1196, 1433, 1440, 1860, 1912, 1922
Hpy8I	GTNNAC	9 cut(s)	159, 713, 1127, 1379, 1428, 1883, 2050, 2151, 2381
HpyAV	CCTTC	5 cut(s)	332, 722, 934, 1697, 2301
HpyCH4IV	ACGT	1 cut(s)	1424
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 497, 895, 1265, 2031, 2256, 2579, 2588
HpyF3I	CTNAG	9 cut(s)	418, 560, 611, 1345, 1664, 1910, 1959, 2141, 2574
HpySE526I	ACGT	1 cut(s)	1424
Ksp22I	TGATCA	3 cut(s)	769, 1531, 1846
KspAI	GTTAAC	1 cut(s)	2151
LguI	GCTCTTC	2 cut(s)	28, 945
LmnI	GCTCC	5 cut(s)	51, 176, 561, 1678, 1986
Lsp1109I	GCAGC	2 cut(s)	1756, 2195
MabI	ACCWGGT	1 cut(s)	539
MaeI	CTAG	5 cut(s)	294, 501, 1116, 1433, 1449
MaeII	ACGT	1 cut(s)	1424
MaeIII	GTNAC	6 cut(s)	33, 675, 826, 1444, 1682, 2664
MboII	GAAGA	9 cut(s)	15, 76, 99, 962, 2268, 2292, 2436, 2486, 2514
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	4 cut(s)	514, 811, 1988, 2659
MhlI	GDGCHC	5 cut(s)	56, 412, 1911, 2383, 2575
MlsI	TGGCCA	1 cut(s)	759
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	3 cut(s)	1201, 1423, 1878
MmeI	TCCRAC	6 cut(s)	199, 223, 243, 728, 1065, 1381
Mox20I	TGGCCA	1 cut(s)	759
Mph1103I	ATGCAT	1 cut(s)	1530
MroXI	GAANNNNTTC	2 cut(s)	922, 2170
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	6 cut(s)	270, 402, 705, 1466, 1539, 2150
MslI	CAYNNNNRTG	3 cut(s)	777, 1808, 2452
Msp20I	TGGCCA	1 cut(s)	759
MspA1I	CMGCKG	1 cut(s)	1259
MspI	CCGG	3 cut(s)	38, 686, 2544
MspR9I	CCNGG	9 cut(s)	112, 541, 1056, 1836, 1892, 1986, 2040, 2236, 2545
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	3 cut(s)	1975, 2272, 2341
MvaI	CCWGG	8 cut(s)	112, 541, 1056, 1836, 1892, 1986, 2040, 2236
MvnI	CGCG	1 cut(s)	1577
MwoI	GCNNNNNNNGC	8 cut(s)	11, 497, 895, 1265, 2031, 2256, 2579, 2588
NciI	CCSGG	1 cut(s)	2545
NcoI	CCATGG	1 cut(s)	1803
NdeI	CATATG	2 cut(s)	1069, 1393
NlaIV	GGNNCC	6 cut(s)	116, 813, 1089, 1267, 1982, 2542
NmuCI	GTSAC	5 cut(s)	33, 675, 826, 1682, 2664
NsiI	ATGCAT	1 cut(s)	1530
NspI	RCATGY	4 cut(s)	1028, 1245, 2376, 2591
NspV	TTCGAA	1 cut(s)	62
OliI	CACNNNNGTG	1 cut(s)	2452
PaeI	GCATGC	1 cut(s)	1028
PaeR7I	CTCGAG	1 cut(s)	904
PceI	AGGCCT	2 cut(s)	1453, 2323
PciI	ACATGT	1 cut(s)	2372
PciSI	GCTCTTC	2 cut(s)	28, 945
PctI	GAATGC	3 cut(s)	1975, 2272, 2341
PdmI	GAANNNNTTC	2 cut(s)	922, 2170
PfeI	GAWTC	6 cut(s)	581, 1181, 1364, 1436, 2056, 2137
PflMI	CCANNNNNTGG	4 cut(s)	48, 1237, 1262, 2693
PfoI	TCCNGGA	1 cut(s)	1054
PkrI	GCNGC	4 cut(s)	7, 1746, 2076, 2185
PleI	GAGTC	3 cut(s)	1200, 1423, 1878
PpsI	GAGTC	3 cut(s)	1200, 1423, 1878
PpuMI	RGGWCCY	1 cut(s)	2042
PscI	ACATGT	1 cut(s)	2372
Psp124BI	GAGCTC	1 cut(s)	56
Psp1406I	AACGTT	1 cut(s)	1424
Psp5II	RGGWCCY	1 cut(s)	2042
Psp6I	CCWGG	8 cut(s)	110, 539, 1054, 1834, 1890, 1984, 2038, 2234
PspFI	CCCAGC	3 cut(s)	1295, 1483, 2531
PspGI	CCWGG	8 cut(s)	110, 539, 1054, 1834, 1890, 1984, 2038, 2234
PspN4I	GGNNCC	6 cut(s)	116, 813, 1089, 1267, 1982, 2542
PspPI	GGNCC	9 cut(s)	114, 620, 699, 1087, 1141, 1266, 2042, 2198, 2306
PspPPI	RGGWCCY	1 cut(s)	2042
PsrI	GAACNNNNNNTAC	2 cut(s)	2389, 2421
PstI	CTGCAG	1 cut(s)	2185
PstNI	CAGNNNCTG	2 cut(s)	2045, 2618
PsuI	RGATCY	4 cut(s)	514, 811, 1988, 2659
PvuII	CAGCTG	1 cut(s)	1259
RsaI	GTAC	6 cut(s)	171, 662, 1035, 1513, 2101, 2368
RsaNI	GTAC	6 cut(s)	170, 661, 1034, 1512, 2100, 2367
RseI	CAYNNNNRTG	3 cut(s)	777, 1808, 2452
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	2 cut(s)	28, 945
SaqAI	TTAA	6 cut(s)	270, 402, 705, 1466, 1539, 2150
SatI	GCNGC	4 cut(s)	6, 1745, 2075, 2184
Sau96I	GGNCC	9 cut(s)	114, 620, 699, 1087, 1141, 1266, 2042, 2198, 2306
SchI	GAGTC	3 cut(s)	1201, 1423, 1878
ScrFI	CCNGG	9 cut(s)	112, 541, 1056, 1836, 1892, 1986, 2040, 2236, 2545
SduI	GDGCHC	5 cut(s)	56, 412, 1911, 2383, 2575
SexAI	ACCWGGT	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	2181
Sfr274I	CTCGAG	1 cut(s)	904
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	5 cut(s)	620, 699, 1087, 2042, 2198
SlaI	CTCGAG	1 cut(s)	904
SmiMI	CAYNNNNRTG	3 cut(s)	777, 1808, 2452
SmlI	CTYRAG	1 cut(s)	904
SmoI	CTYRAG	1 cut(s)	904
SphI	GCATGC	1 cut(s)	1028
SseBI	AGGCCT	2 cut(s)	1453, 2323
SsiI	CCGC	7 cut(s)	69, 75, 98, 123, 1839, 2074, 2499
SspI	AATATT	1 cut(s)	2020
SspMI	CTAG	5 cut(s)	294, 501, 1116, 1433, 1449
SstI	GAGCTC	1 cut(s)	56
StuI	AGGCCT	2 cut(s)	1453, 2323
StyD4I	CCNGG	9 cut(s)	110, 539, 1054, 1834, 1890, 1984, 2038, 2234, 2543
StyI	CCWWGG	3 cut(s)	1010, 1569, 1803
TaiI	ACGT	1 cut(s)	1427
TaqI	TCGA	8 cut(s)	56, 62, 905, 985, 1184, 1207, 2311, 2326
TaqII	GACCGA	2 cut(s)	1010, 2166
TatI	WGTACW	2 cut(s)	1033, 2366
TauI	GCSGC	1 cut(s)	2077
TfiI	GAWTC	6 cut(s)	581, 1181, 1364, 1436, 2056, 2137
Tru1I	TTAA	6 cut(s)	270, 402, 705, 1466, 1539, 2150
Tru9I	TTAA	6 cut(s)	270, 402, 705, 1466, 1539, 2150
TscAI	CASTG	8 cut(s)	16, 311, 456, 498, 1386, 1620, 1815, 1967
TseFI	GTSAC	5 cut(s)	33, 675, 826, 1682, 2664
TseI	GCWGC	3 cut(s)	5, 1744, 2183
Tsp45I	GTSAC	5 cut(s)	33, 675, 826, 1682, 2664
TspDTI	ATGAA	9 cut(s)	522, 741, 810, 953, 1703, 1766, 1858, 2019, 2348
TspGWI	ACGGA	5 cut(s)	21, 605, 855, 2168, 2652
TspRI	CASTG	8 cut(s)	16, 311, 456, 498, 1386, 1620, 1815, 1967
Van91I	CCANNNNNTGG	4 cut(s)	48, 1237, 1262, 2693
VneI	GTGCAC	1 cut(s)	2379
VpaK11BI	GGWCC	5 cut(s)	620, 699, 1087, 2042, 2198
XagI	CCTNNNNNAGG	1 cut(s)	109
XapI	RAATTY	5 cut(s)	58, 692, 1166, 1930, 2429
XbaI	TCTAGA	1 cut(s)	1432
XceI	RCATGY	4 cut(s)	1028, 1245, 2376, 2591
XhoI	CTCGAG	1 cut(s)	904
XmnI	GAANNNNTTC	2 cut(s)	922, 2170
XspI	CTAG	5 cut(s)	294, 501, 1116, 1433, 1449
Zsp2I	ATGCAT	1 cut(s)	1530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.