Rw1G008520

Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
18433667 .. 18439542
5876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008520.1

Sequence Viewer

Length: 1032 bp
ATGGGATATGATGACATGGGGTATAAACTCTGGAAACCCTACCTTAGAGCTGTTATGGAGCGTGACATGAAAGCAGTTAGCGAAGGTAATAAGAGCAAAGCTGAAGTTTTGGAAACTTGCTTGCAGCAAATGAAAGCCTGCTTCGTTGATGCGAGGCTGAACAAAGTAAAACTTTTTGAAGCCATGGGAGTGTTCTTTGAGAGATCAAATAGACCTGGTGGAGATGAGCAGCATGCATCTGGAGAGTTCATTCGACGATGTGGACACTGCCAGGAAGCGGATATAGTGCTTCGGAAAAATCGGGATGGAAATTTTATGGCGGGATGCATGGGTTATCCTCAGTGTAGGAATGCTATCTGGCTCCCTGGATCTGTATCAGAAGCAGCTGTAACAACTAATGTTTGCAACTCATGCACTCCAGGTCCTGTTTACTTGATTCAATTTACATTTCGTTGTATTGGTGGGTGTGACGAGATTCTTCGACAGTTAATAGAAATCTGCGGAACTGGTTCTCGGTCAGCAGCAAGAGGGAGAGGACCCGCAACATCCAGCAATGTTCCACGAAGTAATACCAGGCAGGGTGCTTGCATATACTGCCACCAGTCAGGGCATTCTTCAGGCGATTGCCCTTCCCAATCTTCAGGCCATCGAAGTGTTAGGCCTCGAACTATGAATGCACAAAGTGGGCAAATATCAGTCTCATGTACTACATGTGGTGCACCGTGCACTCTACGAACTGCTAATACCGCACAGAATAGAGGAAGAAAATTCTACTCATGCCCGTCGCAGGAGTGCAACTTCTTTGTATGGGAGGATAACGTCAGCAATGGGAATGGCGGAAGAGGTTTTCAGCGTGCCAACGTTAGCAGTGGGAGTGGTGCCCGCGGCAGAGGTGCCCGGGGTGCAGGAGCAGGACATGCTACTGGTGGGACTTTTGTGTCCGCAACTGGTGATCCCAATTCTGGTAGAAGGTGTTTTGTTTGTGGAGATCCGTCACACTTTGCAAATGTTTGCCCAAACCGTGGAAACTGA

Protein Analysis

343

Amino Acids

36.87

Weight (kDa)

9.09

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Top1 PF01396 85 - 122 3.6e-08 Topoisomerase DNA binding C4 zinc finger
Zn_ribbon_GRF PF06839 234 - 273 1.6e-12 GRF zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 937
AccB1I GGYRCC 2 cut(s) 878, 893
AccB7I CCANNNNNTGG 1 cut(s) 1022
AccII CGCG 1 cut(s) 885
AciI CCGC 9 cut(s) 278, 320, 501, 540, 747, 837, 883, 885, 942
AclI AACGTT 1 cut(s) 861
AclWI GGATC 3 cut(s) 376, 947, 983
AcsI RAATTY 2 cut(s) 310, 767
AcuI CTGAAG 3 cut(s) 123, 600, 624
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 1 cut(s) 706
AfiI CCNNNNNNNGG 4 cut(s) 277, 787, 962, 1022
AflIII ACRYGT 1 cut(s) 710
AgsI TTSAA 2 cut(s) 179, 440
AjnI CCWGG 5 cut(s) 214, 270, 364, 418, 572
AluBI AGCT 3 cut(s) 50, 101, 386
AluI AGCT 3 cut(s) 50, 101, 386
Alw21I GWGCWC 2 cut(s) 721, 728
Alw26I GTCTC 1 cut(s) 703
Alw44I GTGCAC 2 cut(s) 717, 724
AlwI GGATC 3 cut(s) 376, 947, 983
AlwNI CAGNNNCTG 1 cut(s) 425
Ama87I CYCGRG 1 cut(s) 897
AoxI GGCC 2 cut(s) 643, 659
ApaLI GTGCAC 2 cut(s) 717, 724
ApeKI GCWGC 4 cut(s) 124, 229, 383, 521
ApoI RAATTY 2 cut(s) 310, 767
Asp700I GAANNNNTTC 1 cut(s) 508
AspS9I GGNCC 2 cut(s) 422, 536
AsuC2I CCSGG 2 cut(s) 898, 899
AsuHPI GGTGA 1 cut(s) 962
AvaI CYCGRG 1 cut(s) 897
AvaII GGWCC 2 cut(s) 422, 536
BaeGI GKGCMC 4 cut(s) 721, 728, 883, 898
BanI GGYRCC 2 cut(s) 878, 893
Bbv12I GWGCWC 2 cut(s) 721, 728
BbvI GCAGC 4 cut(s) 136, 241, 395, 533
BccI CCATC 2 cut(s) 299, 654
BciT130I CCWGG 5 cut(s) 216, 272, 366, 420, 574
BcnI CCSGG 2 cut(s) 898, 899
BcoDI GTCTC 1 cut(s) 703
BisI GCNGC 5 cut(s) 125, 230, 384, 522, 886
BlsI GCNGC 5 cut(s) 126, 231, 385, 523, 887
Bme1390I CCNGG 7 cut(s) 216, 272, 366, 420, 574, 898, 899
Bme18I GGWCC 2 cut(s) 422, 536
BmeT110I CYCGRG 1 cut(s) 897
BmgT120I GGNCC 2 cut(s) 422, 536
BmiI GGNNCC 4 cut(s) 362, 538, 880, 895
BmrFI CCNGG 7 cut(s) 216, 272, 366, 420, 574, 898, 899
BmsI GCATC 3 cut(s) 139, 245, 314
BpmI CTGGAG 2 cut(s) 261, 402
BpuMI CCSGG 2 cut(s) 898, 899
BsaBI GATNNNNATC 1 cut(s) 373
BsaJI CCNNGG 6 cut(s) 183, 364, 883, 897, 898, 1021
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 787, 962, 1022
Bse1I ACTGG 4 cut(s) 511, 601, 928, 952
Bse3DI GCAATG 2 cut(s) 559, 832
Bse8I GATNNNNATC 1 cut(s) 373
BseBI CCWGG 5 cut(s) 216, 272, 366, 420, 574
BseDI CCNNGG 6 cut(s) 183, 364, 883, 897, 898, 1021
BseGI GGATG 3 cut(s) 310, 329, 545
BseJI GATNNNNATC 1 cut(s) 373
BseLI CCNNNNNNNGG 4 cut(s) 277, 787, 962, 1022
BseMI GCAATG 2 cut(s) 559, 832
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 4 cut(s) 511, 601, 928, 952
BseSI GKGCMC 4 cut(s) 721, 728, 883, 898
BseXI GCAGC 4 cut(s) 136, 241, 395, 533
BsgI GTGCAG 1 cut(s) 924
Bsh1236I CGCG 1 cut(s) 885
BshFI GGCC 2 cut(s) 645, 661
BshNI GGYRCC 2 cut(s) 878, 893
BsiHKAI GWGCWC 2 cut(s) 721, 728
BsiHKCI CYCGRG 1 cut(s) 897
BsiSI CCGG 1 cut(s) 898
BslFI GGGAC 1 cut(s) 943
BslI CCNNNNNNNGG 4 cut(s) 277, 787, 962, 1022
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 1 cut(s) 943
BsmI GAATGC 3 cut(s) 355, 610, 679
BsnI GGCC 2 cut(s) 645, 661
BsoBI CYCGRG 1 cut(s) 897
Bsp1286I GDGCHC 4 cut(s) 721, 728, 883, 898
Bsp143I GATC 4 cut(s) 203, 368, 952, 988
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 9 cut(s) 278, 320, 501, 540, 747, 837, 883, 885, 942
BspANI GGCC 2 cut(s) 645, 661
BspCNI CTCAG 1 cut(s) 352
BspFNI CGCG 1 cut(s) 885
BspLI GGNNCC 4 cut(s) 362, 538, 880, 895
BspPI GGATC 3 cut(s) 376, 947, 983
BspT107I GGYRCC 2 cut(s) 878, 893
BsrDI GCAATG 2 cut(s) 559, 832
BsrI ACTGG 4 cut(s) 511, 601, 928, 952
BssECI CCNNGG 6 cut(s) 183, 364, 883, 897, 898, 1021
BssMI GATC 4 cut(s) 203, 368, 952, 988
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 5 cut(s) 216, 272, 366, 420, 574
Bst4CI ACNGT 3 cut(s) 486, 723, 1022
Bst6I CTCTTC 1 cut(s) 835
BstAPI GCANNNNNTGC 3 cut(s) 411, 594, 917
BstC8I GCNNGC 6 cut(s) 122, 139, 234, 586, 855, 883
BstDEI CTNAG 2 cut(s) 44, 339
BstDSI CCRYGG 3 cut(s) 183, 883, 1021
BstF5I GGATG 3 cut(s) 310, 329, 545
BstFNI CGCG 1 cut(s) 885
BstKTI GATC 4 cut(s) 206, 371, 955, 991
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 4 cut(s) 203, 368, 952, 988
BstMWI GCNNNNNNNGC 5 cut(s) 411, 594, 746, 902, 917
BstNI CCWGG 5 cut(s) 216, 272, 366, 420, 574
BstNSI RCATGY 3 cut(s) 236, 714, 920
BstSCI CCNGG 7 cut(s) 214, 270, 364, 418, 572, 896, 897
BstSLI GKGCMC 4 cut(s) 721, 728, 883, 898
BstUI CGCG 1 cut(s) 885
BstV1I GCAGC 4 cut(s) 136, 241, 395, 533
BstX2I RGATCY 2 cut(s) 368, 988
BstYI RGATCY 2 cut(s) 368, 988
BsuRI GGCC 2 cut(s) 645, 661
BtgI CCRYGG 3 cut(s) 183, 883, 1021
BtsCI GGATG 3 cut(s) 310, 329, 545
BtsI GCAGTG 2 cut(s) 265, 874
BtsIMutI CAGTG 3 cut(s) 265, 347, 874
Cac8I GCNNGC 6 cut(s) 122, 139, 234, 586, 855, 883
CaiI CAGNNNCTG 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 422, 536
Cfr42I CCGCGG 1 cut(s) 886
Cfr9I CCCGGG 1 cut(s) 897
CsiI ACCWGGT 1 cut(s) 214
Csp6I GTAC 1 cut(s) 705
CviJI RGCY 9 cut(s) 50, 101, 137, 157, 182, 361, 386, 645, 661
CviKI_1 RGCY 9 cut(s) 50, 101, 137, 157, 182, 361, 386, 645, 661
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 2 cut(s) 44, 339
DpnI GATC 4 cut(s) 205, 370, 954, 990
DpnII GATC 4 cut(s) 203, 368, 952, 988
DraIII CACNNNGTG 1 cut(s) 683
DrdI GACNNNNNNGTC 1 cut(s) 937
DseDI GACNNNNNNGTC 1 cut(s) 937
Eam1104I CTCTTC 1 cut(s) 835
EarI CTCTTC 1 cut(s) 835
EciI GGCGGA 1 cut(s) 852
Eco130I CCWWGG 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 661
Eco47I GGWCC 2 cut(s) 422, 536
Eco57I CTGAAG 3 cut(s) 123, 600, 624
Eco88I CYCGRG 1 cut(s) 897
EcoO109I RGGNCCY 2 cut(s) 422, 536
EcoRII CCWGG 5 cut(s) 214, 270, 364, 418, 572
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 2 cut(s) 238, 329
ErhI CCWWGG 1 cut(s) 183
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FaqI GGGAC 1 cut(s) 943
FauI CCCGC 3 cut(s) 313, 547, 890
Fnu4HI GCNGC 5 cut(s) 125, 230, 384, 522, 886
FokI GGATG 3 cut(s) 317, 336, 532
Fsp4HI GCNGC 5 cut(s) 125, 230, 384, 522, 886
GluI GCNGC 5 cut(s) 125, 230, 384, 522, 886
GsuI CTGGAG 2 cut(s) 261, 402
HaeIII GGCC 2 cut(s) 645, 661
HapII CCGG 1 cut(s) 898
HinfI GANTC 2 cut(s) 436, 475
HpaII CCGG 1 cut(s) 898
HphI GGTGA 1 cut(s) 962
Hpy166II GTNNAC 4 cut(s) 263, 430, 719, 726
Hpy188I TCNGA 2 cut(s) 294, 379
Hpy188III TCNNGA 3 cut(s) 31, 240, 302
Hpy8I GTNNAC 4 cut(s) 263, 430, 719, 726
Hpy99I CGWCG 2 cut(s) 258, 787
HpyAV CCTTC 3 cut(s) 77, 639, 963
HpyCH4III ACNGT 3 cut(s) 486, 723, 1022
HpyCH4IV ACGT 2 cut(s) 819, 861
HpyF10VI GCNNNNNNNGC 5 cut(s) 411, 594, 746, 902, 917
HpyF3I CTNAG 2 cut(s) 44, 339
HpySE526I ACGT 2 cut(s) 819, 861
KspI CCGCGG 1 cut(s) 886
Kzo9I GATC 4 cut(s) 203, 368, 952, 988
LmnI GCTCC 3 cut(s) 58, 366, 908
Lsp1109I GCAGC 4 cut(s) 136, 241, 395, 533
LweI GCATC 3 cut(s) 139, 245, 314
MabI ACCWGGT 1 cut(s) 214
MaeII ACGT 2 cut(s) 819, 861
MaeIII GTNAC 4 cut(s) 62, 388, 467, 993
MalI GATC 4 cut(s) 205, 370, 954, 990
MboI GATC 4 cut(s) 203, 368, 952, 988
MboII GAAGA 5 cut(s) 470, 606, 630, 774, 852
MflI RGATCY 2 cut(s) 368, 988
MhlI GDGCHC 4 cut(s) 721, 728, 883, 898
MluCI AATT 4 cut(s) 310, 440, 767, 958
MnlI CCTC 9 cut(s) 147, 348, 521, 527, 672, 752, 805, 836, 884
Mph1103I ATGCAT 2 cut(s) 238, 329
MroXI GAANNNNTTC 1 cut(s) 508
MseI TTAA 1 cut(s) 488
MslI CAYNNNNRTG 2 cut(s) 188, 651
MspA1I CMGCKG 2 cut(s) 386, 885
MspI CCGG 1 cut(s) 898
MspR9I CCNGG 7 cut(s) 216, 272, 366, 420, 574, 898, 899
Mva1269I GAATGC 3 cut(s) 355, 610, 679
MvaI CCWGG 5 cut(s) 216, 272, 366, 420, 574
MvnI CGCG 1 cut(s) 885
MwoI GCNNNNNNNGC 5 cut(s) 411, 594, 746, 902, 917
NciI CCSGG 2 cut(s) 898, 899
NcoI CCATGG 1 cut(s) 183
NdeII GATC 4 cut(s) 203, 368, 952, 988
NlaIV GGNNCC 4 cut(s) 362, 538, 880, 895
NmuCI GTSAC 3 cut(s) 62, 467, 993
NsiI ATGCAT 2 cut(s) 238, 329
NspI RCATGY 3 cut(s) 236, 714, 920
PaeI GCATGC 1 cut(s) 236
PceI AGGCCT 1 cut(s) 661
PciI ACATGT 1 cut(s) 710
PctI GAATGC 3 cut(s) 355, 610, 679
PdmI GAANNNNTTC 1 cut(s) 508
PfeI GAWTC 2 cut(s) 436, 475
PflMI CCANNNNNTGG 1 cut(s) 1022
PkrI GCNGC 5 cut(s) 126, 231, 385, 523, 887
PpuMI RGGWCCY 2 cut(s) 422, 536
PscI ACATGT 1 cut(s) 710
Psp1406I AACGTT 1 cut(s) 861
Psp5II RGGWCCY 2 cut(s) 422, 536
Psp6I CCWGG 5 cut(s) 214, 270, 364, 418, 572
PspGI CCWGG 5 cut(s) 214, 270, 364, 418, 572
PspN4I GGNNCC 4 cut(s) 362, 538, 880, 895
PspPI GGNCC 2 cut(s) 422, 536
PspPPI RGGWCCY 2 cut(s) 422, 536
PsrI GAACNNNNNNTAC 2 cut(s) 727, 759
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 2 cut(s) 368, 988
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
RseI CAYNNNNRTG 2 cut(s) 188, 651
SacII CCGCGG 1 cut(s) 886
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 5 cut(s) 125, 230, 384, 522, 886
Sau3AI GATC 4 cut(s) 203, 368, 952, 988
Sau96I GGNCC 2 cut(s) 422, 536
ScrFI CCNGG 7 cut(s) 216, 272, 366, 420, 574, 898, 899
SduI GDGCHC 4 cut(s) 721, 728, 883, 898
SexAI ACCWGGT 1 cut(s) 214
SfaNI GCATC 3 cut(s) 139, 245, 314
Sfr303I CCGCGG 1 cut(s) 886
SgrBI CCGCGG 1 cut(s) 886
SinI GGWCC 2 cut(s) 422, 536
SmaI CCCGGG 1 cut(s) 899
SmiMI CAYNNNNRTG 2 cut(s) 188, 651
SphI GCATGC 1 cut(s) 236
Sse9I AATT 4 cut(s) 310, 440, 767, 958
SseBI AGGCCT 1 cut(s) 661
SsiI CCGC 9 cut(s) 278, 320, 501, 540, 747, 837, 883, 885, 942
StuI AGGCCT 1 cut(s) 661
StyD4I CCNGG 7 cut(s) 214, 270, 364, 418, 572, 896, 897
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 3 cut(s) 486, 723, 1022
TaiI ACGT 2 cut(s) 822, 864
TaqI TCGA 4 cut(s) 253, 481, 649, 664
TaqII GACCGA 1 cut(s) 504
TasI AATT 4 cut(s) 310, 440, 767, 958
TatI WGTACW 1 cut(s) 704
TauI GCSGC 1 cut(s) 888
TfiI GAWTC 2 cut(s) 436, 475
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 3 cut(s) 272, 347, 874
TseFI GTSAC 3 cut(s) 62, 467, 993
TseI GCWGC 4 cut(s) 124, 229, 383, 521
Tsp45I GTSAC 3 cut(s) 62, 467, 993
TspDTI ATGAA 4 cut(s) 83, 146, 238, 686
TspGWI ACGGA 1 cut(s) 981
TspMI CCCGGG 1 cut(s) 897
TspRI CASTG 3 cut(s) 272, 347, 874
Van91I CCANNNNNTGG 1 cut(s) 1022
VneI GTGCAC 2 cut(s) 717, 724
VpaK11BI GGWCC 2 cut(s) 422, 536
XapI RAATTY 2 cut(s) 310, 767
XceI RCATGY 3 cut(s) 236, 714, 920
XmaI CCCGGG 1 cut(s) 897
XmnI GAANNNNTTC 1 cut(s) 508
Zsp2I ATGCAT 2 cut(s) 238, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.