pycom15g12120

Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
8259139 .. 8262810
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12120.1

Sequence Viewer

Length: 1260 bp
ATGTCAGGGAGTGGGGGTAGTATTAGGGTGCTGAACGTGGCGGAGAAGCCGTCGGTGGCCAAGTCGGTGGCGACATTACTGTCAGGGAACCAAGGGCAAGGGCTGAGAGTGAGGGAAGGCCGATCCCGCTACAACAAAATCTTCGAGTTCAACTACTCCATCAATGGCCGCCCCTGCCACATGCTCGTCACCTCCGTCACCGGCCACCTCATGGAGCTCGAATTTGAGGACCGCTTTCGAAAATGGCACGCCTGCGACCCCGCCCTTCTCTTTACCGCTCCCGTCCATAAAAAAGTCCCTGAGGACAAGTTGGATATCAAGAGGACGTTAGAGGAGGAAGCAAGGAGGTGCCAGTGGCTTGTCTTGTGGCTCGATTGTGATAGAGAAGGAGAAAACATTGCGTTTGAAGTCATAGAAGTATGCACAGCCGTGAATCGTCATCTTACCATAAGGAGGGCTCGTTTCTCAGCTTTGACTGAAAGGGATATCTATAATGCGGTGCAGAATCTTGTCAACGCAAACAAATTCTTTGCTGATGCAGTGGATGCTAGGCAAGAAATAGATCTTCGGATTGGTGCTTCGTTTACTAGGTTTCAGACTATGCTGCTGAGAGATGCATTTGTTATTGATTCCACCGCAAGTGACAGAAATCTTGTTCTAAGTTATGGTCCTTGCCAGTTCCCTACACTTGGATTTGTTGTGGAGAGATATTGGGAAATACAGTTGCACGAGCCAGAGGAGTTTTGGACCATAAACTGTTCACACAAATCAGATGAAGGCACTGCTACATTCCATTGGATGCGTGGGCATTTATTCGACTATGCTTGTGCTGTTGTTATTTATGAAATGTGTGTTGAGGAACCTACTGCTACTGTGACAAAGGTTAGACAACAGGAGAAGCTGAAAAAGCCTCCAAATCCTCTGAATACAATTCAGCTTGAACAGCGTGCCTCAATATACTTTCGGATGAGTTCTGAACACACAATGAAGGTGGCAGAAGAGCTGTACCAAGCTGGTTTCATCAGTTATCCTCGTACGGAGACTGATGGCTTCTCTGAAAGGACGGACTTACATGTGATTGTGGAAGAACAACAAAGGCATCCTGGATGGGGATCATATGCTCAACGATTGTTGGACCCAGCATCTGGGCTTTGGAAAAACCCTAGCAGTGGTGGACATGATGACAAGGCCCATCCACCTATCCACCCCACTAAATTTTCTTCTGGAGAATCAGGATGGAGTCAAGATCGAACCATGTAA

Protein Analysis

420

Amino Acids

47.98

Weight (kDa)

6.22

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Toprim PF01751 11 - 157 1.6e-13 Toprim domain
Topoisom_bac PF01131 177 - 406 1.2e-54 DNA topoisomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 2 cut(s) 211, 1145
AccBSI CCGCTC 1 cut(s) 278
AciI CCGC 8 cut(s) 41, 127, 169, 232, 261, 276, 497, 636
AclWI GGATC 2 cut(s) 117, 1120
AcoI YGGCCR 3 cut(s) 57, 166, 202
AcsI RAATTY 3 cut(s) 221, 524, 1214
AfaI GTAC 2 cut(s) 1007, 1036
AfiI CCNNNNNNNGG 6 cut(s) 211, 453, 689, 1109, 1145, 1169
AflIII ACRYGT 1 cut(s) 1072
AgsI TTSAA 3 cut(s) 151, 407, 941
AjnI CCWGG 1 cut(s) 1102
AleI CACNNNNGTG 1 cut(s) 428
AluBI AGCT 6 cut(s) 217, 470, 901, 937, 1003, 1013
AluI AGCT 6 cut(s) 217, 470, 901, 937, 1003, 1013
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 1034
AlwI GGATC 2 cut(s) 117, 1120
AlwNI CAGNNNCTG 1 cut(s) 1145
AoxI GGCC 5 cut(s) 57, 118, 166, 202, 1188
ApeKI GCWGC 1 cut(s) 604
ApoI RAATTY 3 cut(s) 221, 524, 1214
AspS9I GGNCC 5 cut(s) 229, 668, 747, 1135, 1189
AsuHPI GGTGA 2 cut(s) 181, 190
AsuII TTCGAA 1 cut(s) 238
AvaII GGWCC 4 cut(s) 229, 668, 747, 1135
AxyI CCTNAGG 1 cut(s) 300
BalI TGGCCA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 348
BanII GRGCYC 2 cut(s) 219, 460
BauI CACGAG 1 cut(s) 728
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 591
BccI CCATC 5 cut(s) 167, 1040, 1101, 1200, 1230
BceAI ACGGC 2 cut(s) 34, 413
BciT130I CCWGG 1 cut(s) 1104
BcoDI GTCTC 1 cut(s) 1034
BfaI CTAG 3 cut(s) 549, 588, 1164
BglII AGATCT 1 cut(s) 562
BisI GCNGC 2 cut(s) 169, 605
BlsI GCNGC 2 cut(s) 170, 606
Bme1390I CCNGG 1 cut(s) 1104
Bme18I GGWCC 4 cut(s) 229, 668, 747, 1135
BmgT120I GGNCC 5 cut(s) 229, 668, 747, 1135, 1189
BmiI GGNNCC 4 cut(s) 89, 350, 861, 1137
BmrFI CCNGG 1 cut(s) 1104
BmsI GCATC 6 cut(s) 526, 535, 604, 789, 1108, 1151
BpmI CTGGAG 1 cut(s) 1245
Bpu14I TTCGAA 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 1111
BsaJI CCNNGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 5 cut(s) 31, 35, 65, 445, 475
Bsc4I CCNNNNNNNGG 6 cut(s) 211, 453, 689, 1109, 1145, 1169
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 352, 676
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 396
Bse8I GATNNNNATC 1 cut(s) 1111
BseBI CCWGG 1 cut(s) 1104
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 7 cut(s) 550, 804, 972, 1099, 1112, 1192, 1241
BseJI GATNNNNATC 1 cut(s) 1111
BseLI CCNNNNNNNGG 6 cut(s) 211, 453, 689, 1109, 1145, 1169
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 4 cut(s) 95, 291, 480, 599
BseNI ACTGG 2 cut(s) 352, 676
BseRI GAGGAG 2 cut(s) 347, 752
BseXI GCAGC 1 cut(s) 591
BseYI CCCAGC 1 cut(s) 1138
BsgI GTGCAG 1 cut(s) 521
BshFI GGCC 5 cut(s) 59, 120, 168, 204, 1190
BshNI GGYRCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 201
BsiWI CGTACG 1 cut(s) 1034
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 6 cut(s) 211, 453, 689, 1109, 1145, 1169
BsmAI GTCTC 1 cut(s) 1034
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 5 cut(s) 59, 120, 168, 204, 1190
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 219, 460
Bsp143I GATC 4 cut(s) 122, 562, 1112, 1246
BspACI CCGC 8 cut(s) 41, 127, 169, 232, 261, 276, 497, 636
BspANI GGCC 5 cut(s) 59, 120, 168, 204, 1190
BspCNI CTCAG 4 cut(s) 96, 292, 479, 600
BspLI GGNNCC 4 cut(s) 89, 350, 861, 1137
BspPI GGATC 2 cut(s) 117, 1120
BspQI GCTCTTC 1 cut(s) 993
BspT104I TTCGAA 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 348
BsrBI CCGCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 352, 676
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 4 cut(s) 122, 562, 1112, 1246
BssSI CACGAG 1 cut(s) 728
BssT1I CCWWGG 1 cut(s) 91
Bst2BI CACGAG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 1104
Bst4CI ACNGT 4 cut(s) 81, 723, 758, 874
Bst6I CTCTTC 1 cut(s) 993
BstAPI GCANNNNNTGC 1 cut(s) 545
BstBI TTCGAA 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 249, 253, 948
BstDEI CTNAG 5 cut(s) 104, 300, 466, 608, 659
BstF5I GGATG 7 cut(s) 550, 804, 972, 1099, 1112, 1192, 1241
BstKTI GATC 4 cut(s) 125, 565, 1115, 1249
BstMAI GTCTC 1 cut(s) 1034
BstMBI GATC 4 cut(s) 122, 562, 1112, 1246
BstMWI GCNNNNNNNGC 5 cut(s) 126, 174, 545, 907, 943
BstNI CCWGG 1 cut(s) 1104
BstNSI RCATGY 2 cut(s) 184, 1076
BstSCI CCNGG 1 cut(s) 1102
BstV1I GCAGC 1 cut(s) 591
BstX2I RGATCY 1 cut(s) 562
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 1 cut(s) 562
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 5 cut(s) 59, 120, 168, 204, 1190
BtsCI GGATG 7 cut(s) 550, 804, 972, 1099, 1112, 1192, 1241
BtsI GCAGTG 3 cut(s) 546, 780, 1174
BtsIMutI CAGTG 4 cut(s) 359, 546, 780, 1174
Cac8I GCNNGC 3 cut(s) 249, 253, 948
CaiI CAGNNNCTG 1 cut(s) 1145
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 5 cut(s) 229, 668, 747, 1135, 1189
Csp6I GTAC 2 cut(s) 1006, 1035
CspCI CAANNNNNGTGG 2 cut(s) 972, 1007
CviAII CATG 5 cut(s) 181, 211, 1073, 1178, 1255
CviQI GTAC 2 cut(s) 1006, 1035
DdeI CTNAG 5 cut(s) 104, 300, 466, 608, 659
DpnI GATC 4 cut(s) 124, 564, 1114, 1248
DpnII GATC 4 cut(s) 122, 562, 1112, 1246
DrdI GACNNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 3 cut(s) 57, 166, 202
Eam1104I CTCTTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 993
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 219, 460
Eco32I GATATC 2 cut(s) 316, 487
Eco47I GGWCC 4 cut(s) 229, 668, 747, 1135
Eco53kI GAGCTC 1 cut(s) 217
Eco81I CCTNAGG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 1102
EcoRV GATATC 2 cut(s) 316, 487
EcoT14I CCWWGG 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 619
EcoT38I GRGCYC 2 cut(s) 219, 460
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 5 cut(s) 184, 214, 1076, 1181, 1258
FaqI GGGAC 1 cut(s) 281
FatI CATG 5 cut(s) 180, 210, 1072, 1177, 1254
FauI CCCGC 2 cut(s) 134, 268
FauNDI CATATG 1 cut(s) 1117
Fnu4HI GCNGC 2 cut(s) 169, 605
FokI GGATG 7 cut(s) 557, 811, 979, 1086, 1119, 1179, 1248
FriOI GRGCYC 2 cut(s) 219, 460
Fsp4HI GCNGC 2 cut(s) 169, 605
FspBI CTAG 3 cut(s) 549, 588, 1164
GluI GCNGC 2 cut(s) 169, 605
GsaI CCCAGC 1 cut(s) 1142
GsuI CTGGAG 1 cut(s) 1245
HaeIII GGCC 5 cut(s) 59, 120, 168, 204, 1190
HapII CCGG 1 cut(s) 201
Hin1II CATG 5 cut(s) 184, 214, 1076, 1181, 1258
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 5 cut(s) 433, 505, 629, 1229, 1240
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 181, 190
Hpy166II GTNNAC 4 cut(s) 514, 585, 761, 1175
Hpy188I TCNGA 7 cut(s) 570, 597, 772, 924, 966, 976, 1057
Hpy188III TCNNGA 4 cut(s) 319, 1224, 1233, 1244
Hpy8I GTNNAC 4 cut(s) 514, 585, 761, 1175
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 5 cut(s) 110, 275, 380, 770, 982
HpyCH4III ACNGT 4 cut(s) 81, 723, 758, 874
HpyCH4IV ACGT 2 cut(s) 36, 326
HpyCH4V TGCA 5 cut(s) 423, 502, 539, 617, 727
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 174, 545, 907, 943
HpyF3I CTNAG 5 cut(s) 104, 300, 466, 608, 659
HpySE526I ACGT 2 cut(s) 36, 326
Hsp92II CATG 5 cut(s) 184, 214, 1076, 1181, 1258
Kzo9I GATC 4 cut(s) 122, 562, 1112, 1246
LguI GCTCTTC 1 cut(s) 993
LmnI GCTCC 2 cut(s) 214, 283
Lsp1109I GCAGC 1 cut(s) 591
LweI GCATC 6 cut(s) 526, 535, 604, 789, 1108, 1151
MaeI CTAG 3 cut(s) 549, 588, 1164
MaeII ACGT 2 cut(s) 36, 326
MaeIII GTNAC 4 cut(s) 187, 196, 641, 874
MalI GATC 4 cut(s) 124, 564, 1114, 1248
MbiI CCGCTC 1 cut(s) 278
MboI GATC 4 cut(s) 122, 562, 1112, 1246
MboII GAAGA 5 cut(s) 133, 557, 1010, 1097, 1212
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 2 cut(s) 219, 460
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 4 cut(s) 221, 524, 930, 1214
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 1249
MmeI TCCRAC 2 cut(s) 291, 1113
Mox20I TGGCCA 1 cut(s) 59
Mph1103I ATGCAT 1 cut(s) 619
MscI TGGCCA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 1104
MvaI CCWGG 1 cut(s) 1104
MwoI GCNNNNNNNGC 5 cut(s) 126, 174, 545, 907, 943
NdeI CATATG 1 cut(s) 1117
NdeII GATC 4 cut(s) 122, 562, 1112, 1246
NlaIII CATG 5 cut(s) 184, 214, 1076, 1181, 1258
NlaIV GGNNCC 4 cut(s) 89, 350, 861, 1137
NmuCI GTSAC 4 cut(s) 187, 196, 641, 874
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 2 cut(s) 184, 1076
NspV TTCGAA 1 cut(s) 238
OliI CACNNNNGTG 1 cut(s) 428
PciI ACATGT 1 cut(s) 1072
PciSI GCTCTTC 1 cut(s) 993
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 4 cut(s) 433, 505, 629, 1229
Pfl23II CGTACG 1 cut(s) 1034
PflMI CCANNNNNTGG 2 cut(s) 211, 1145
PfoI TCCNGGA 1 cut(s) 1102
PkrI GCNGC 2 cut(s) 170, 606
PleI GAGTC 1 cut(s) 1248
PpsI GAGTC 1 cut(s) 1248
PscI ACATGT 1 cut(s) 1072
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 1102
PspFI CCCAGC 1 cut(s) 1138
PspGI CCWGG 1 cut(s) 1102
PspLI CGTACG 1 cut(s) 1034
PspN4I GGNNCC 4 cut(s) 89, 350, 861, 1137
PspPI GGNCC 5 cut(s) 229, 668, 747, 1135, 1189
PstNI CAGNNNCTG 1 cut(s) 1145
PsuI RGATCY 1 cut(s) 562
RsaI GTAC 2 cut(s) 1007, 1036
RsaNI GTAC 2 cut(s) 1006, 1035
RseI CAYNNNNRTG 1 cut(s) 428
SacI GAGCTC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 993
SatI GCNGC 2 cut(s) 169, 605
Sau3AI GATC 4 cut(s) 122, 562, 1112, 1246
Sau96I GGNCC 5 cut(s) 229, 668, 747, 1135, 1189
SchI GAGTC 1 cut(s) 1249
ScrFI CCNGG 1 cut(s) 1104
SduI GDGCHC 2 cut(s) 219, 460
SfaNI GCATC 6 cut(s) 526, 535, 604, 789, 1108, 1151
SfuI TTCGAA 1 cut(s) 238
SinI GGWCC 4 cut(s) 229, 668, 747, 1135
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 4 cut(s) 221, 524, 930, 1214
SsiI CCGC 8 cut(s) 41, 127, 169, 232, 261, 276, 497, 636
SspMI CTAG 3 cut(s) 549, 588, 1164
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 1102
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 4 cut(s) 81, 723, 758, 874
TaiI ACGT 2 cut(s) 39, 329
TaqI TCGA 6 cut(s) 144, 219, 238, 372, 816, 1249
TasI AATT 4 cut(s) 221, 524, 930, 1214
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 4 cut(s) 433, 505, 629, 1229
TscAI CASTG 4 cut(s) 359, 546, 787, 1174
TseFI GTSAC 4 cut(s) 187, 196, 641, 874
TseI GCWGC 1 cut(s) 604
Tsp45I GTSAC 4 cut(s) 187, 196, 641, 874
TspDTI ATGAA 4 cut(s) 789, 858, 1001, 1009
TspGWI ACGGA 3 cut(s) 184, 1052, 1079
TspRI CASTG 4 cut(s) 359, 546, 787, 1174
Van91I CCANNNNNTGG 2 cut(s) 211, 1145
VpaK11BI GGWCC 4 cut(s) 229, 668, 747, 1135
XapI RAATTY 3 cut(s) 221, 524, 1214
XceI RCATGY 2 cut(s) 184, 1076
XcmI CCANNNNNNNNNTGG 2 cut(s) 741, 800
XspI CTAG 3 cut(s) 549, 588, 1164
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.