Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G63920 |
| fragaria_vesca | FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 |
| malus_domestica | MD15G1134700.v1.1 |
| prunus_persica | Prupe.4G275500_v2.0.a1 Prupe.4G275500_v2.0.a1 |
| pyrus_communis | pycom15g12120 pycom15g12150 |
| rosa_chinensis | RchiOBHm_Chr2g0122231 |
| rosa_laevigata | RLG00000018671 |
| rosa_roxburghii | Rroxscaffold_2G00121760 |
| rosa_rugosa | Rorug02G0237200 |
| rosa_samantha | Rh2AG296000 Rh2BG304900 Rh2CG283300 Rh2DG320000 |
| rosa_wichuraiana | Rw1G008520 Rw2G023570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 809 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2638 |
| AccB1I | GGYRCC | 2 cut(s) | 321, 1727 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 184, 1258 |
| AccBSI | CCGCTC | 1 cut(s) | 251 |
| AccIII | TCCGGA | 1 cut(s) | 1196 |
| AclWI | GGATC | 4 cut(s) | 90, 1093, 2648, 2684 |
| AcoI | YGGCCR | 2 cut(s) | 175, 2602 |
| AcsI | RAATTY | 5 cut(s) | 194, 713, 1187, 1951, 2456 |
| AcuI | CTGAAG | 4 cut(s) | 896, 1764, 2286, 2310 |
| AfaI | GTAC | 5 cut(s) | 610, 1009, 1056, 1534, 2416 |
| AflII | CTTAAG | 1 cut(s) | 421 |
| AjnI | CCWGG | 5 cut(s) | 560, 1075, 1911, 2005, 2059 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1174, 1206 |
| AleI | CACNNNNGTG | 1 cut(s) | 854 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1875, 1907 |
| Alw21I | GWGCWC | 2 cut(s) | 192, 2410 |
| Alw26I | GTCTC | 5 cut(s) | 853, 1007, 1273, 1857, 2150 |
| Alw44I | GTGCAC | 1 cut(s) | 2406 |
| AlwI | GGATC | 4 cut(s) | 90, 1093, 2648, 2684 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2066, 2648 |
| Aor13HI | TCCGGA | 1 cut(s) | 1196 |
| ApaLI | GTGCAC | 1 cut(s) | 2406 |
| ApeKI | GCWGC | 6 cut(s) | 577, 1567, 1765, 1870, 2024, 2621 |
| ApoI | RAATTY | 5 cut(s) | 194, 713, 1187, 1951, 2456 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2191 |
| AspA2I | CCTAGG | 1 cut(s) | 1136 |
| AspLEI | GCGC | 1 cut(s) | 892 |
| AspS9I | GGNCC | 7 cut(s) | 641, 720, 1035, 1162, 2063, 2222, 2330 |
| AsuC2I | CCSGG | 2 cut(s) | 1120, 2606 |
| AsuHPI | GGTGA | 9 cut(s) | 154, 238, 868, 1169, 1214, 1605, 1640, 1651, 2663 |
| AsuII | TTCGAA | 1 cut(s) | 541 |
| AvaII | GGWCC | 5 cut(s) | 641, 720, 1035, 2063, 2330 |
| AvrII | CCTAGG | 1 cut(s) | 1136 |
| AxyI | CCTNAGG | 1 cut(s) | 273 |
| BaeGI | GKGCMC | 1 cut(s) | 2410 |
| BalI | TGGCCA | 1 cut(s) | 177 |
| BanI | GGYRCC | 2 cut(s) | 321, 1727 |
| BanII | GRGCYC | 2 cut(s) | 192, 433 |
| BbsI | GAAGAC | 1 cut(s) | 207 |
| Bbv12I | GWGCWC | 2 cut(s) | 192, 2410 |
| BbvCI | CCTCAGC | 1 cut(s) | 2560 |
| BbvI | GCAGC | 6 cut(s) | 564, 1554, 1777, 1882, 2036, 2608 |
| BccI | CCATC | 8 cut(s) | 140, 1074, 1173, 1203, 1636, 1940, 2666, 2701 |
| BceAI | ACGGC | 3 cut(s) | 13, 221, 386 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1856, 1890, 2473, 2507 |
| BciT130I | CCWGG | 5 cut(s) | 562, 1077, 1913, 2007, 2061 |
| BclI | TGATCA | 1 cut(s) | 1552 |
| BcnI | CCSGG | 2 cut(s) | 1120, 2606 |
| BcoDI | GTCTC | 5 cut(s) | 853, 1007, 1273, 1857, 2150 |
| BfaI | CTAG | 5 cut(s) | 315, 522, 1137, 1787, 2259 |
| BfmI | CTRYAG | 2 cut(s) | 1281, 2116 |
| BfoI | RGCGCY | 1 cut(s) | 893 |
| BfrI | CTTAAG | 1 cut(s) | 421 |
| BisI | GCNGC | 6 cut(s) | 578, 1568, 1766, 1871, 2025, 2622 |
| BlnI | CCTAGG | 1 cut(s) | 1136 |
| BlsI | GCNGC | 6 cut(s) | 579, 1569, 1767, 1872, 2026, 2623 |
| Bme1390I | CCNGG | 7 cut(s) | 562, 1077, 1120, 1913, 2007, 2061, 2606 |
| Bme18I | GGWCC | 5 cut(s) | 641, 720, 1035, 2063, 2330 |
| BmgT120I | GGNCC | 7 cut(s) | 641, 720, 1035, 1162, 2063, 2222, 2330 |
| BmiI | GGNNCC | 6 cut(s) | 68, 323, 834, 1399, 1729, 2003 |
| BmrFI | CCNGG | 7 cut(s) | 562, 1077, 1120, 1913, 2007, 2061, 2606 |
| BmrI | ACTGGG | 1 cut(s) | 2568 |
| BmuI | ACTGGG | 1 cut(s) | 2568 |
| BpiI | GAAGAC | 1 cut(s) | 207 |
| BpmI | CTGGAG | 3 cut(s) | 870, 1902, 2043 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1931, 2560 |
| Bpu14I | TTCGAA | 1 cut(s) | 541 |
| BpuEI | CTTGAG | 1 cut(s) | 1582 |
| BpuMI | CCSGG | 2 cut(s) | 1120, 2606 |
| Bsa29I | ATCGAT | 1 cut(s) | 1576 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1084, 1374 |
| BsaJI | CCNNGG | 5 cut(s) | 1136, 1824, 2005, 2590, 2605 |
| BsaWI | WCCGGW | 1 cut(s) | 1196 |
| Bse118I | RCCGGY | 1 cut(s) | 2094 |
| Bse1I | ACTGG | 4 cut(s) | 178, 2194, 2574, 2653 |
| Bse21I | CCTNAGG | 1 cut(s) | 273 |
| Bse3DI | GCAATG | 2 cut(s) | 369, 2235 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1084, 1374 |
| BseAI | TCCGGA | 1 cut(s) | 1196 |
| BseBI | CCWGG | 5 cut(s) | 562, 1077, 1913, 2007, 2061 |
| BseCI | ATCGAT | 1 cut(s) | 1576 |
| BseDI | CCNNGG | 5 cut(s) | 1136, 1824, 2005, 2590, 2605 |
| BseJI | GATNNNNATC | 2 cut(s) | 1084, 1374 |
| BseMI | GCAATG | 2 cut(s) | 369, 2235 |
| BseMII | CTCAG | 8 cut(s) | 68, 75, 287, 453, 595, 1496, 1994, 2574 |
| BseNI | ACTGG | 4 cut(s) | 178, 2194, 2574, 2653 |
| BseRI | GAGGAG | 1 cut(s) | 320 |
| BseSI | GKGCMC | 1 cut(s) | 2410 |
| BseXI | GCAGC | 6 cut(s) | 564, 1554, 1777, 1882, 2036, 2608 |
| BsgI | GTGCAG | 5 cut(s) | 379, 494, 2038, 2391, 2631 |
| BshNI | GGYRCC | 2 cut(s) | 321, 1727 |
| BshVI | ATCGAT | 1 cut(s) | 1576 |
| BsiHKAI | GWGCWC | 2 cut(s) | 192, 2410 |
| BsiSI | CCGG | 5 cut(s) | 707, 1119, 1197, 2095, 2605 |
| BsiWI | CGTACG | 1 cut(s) | 1007 |
| BslFI | GGGAC | 2 cut(s) | 254, 1421 |
| BsmAI | GTCTC | 5 cut(s) | 853, 1007, 1273, 1857, 2150 |
| BsmBI | CGTCTC | 1 cut(s) | 1857 |
| BsmFI | GGGAC | 2 cut(s) | 254, 1421 |
| BsmI | GAATGC | 1 cut(s) | 2296 |
| Bsp119I | TTCGAA | 1 cut(s) | 541 |
| Bsp1286I | GDGCHC | 3 cut(s) | 192, 433, 2410 |
| Bsp13I | TCCGGA | 1 cut(s) | 1196 |
| Bsp1407I | TGTACA | 1 cut(s) | 1054 |
| Bsp143I | GATC | 9 cut(s) | 95, 740, 1085, 1219, 1552, 1573, 1844, 2653, 2689 |
| Bsp19I | CCATGG | 2 cut(s) | 1824, 2590 |
| BspCNI | CTCAG | 8 cut(s) | 69, 74, 286, 452, 594, 1497, 1993, 2573 |
| BspDI | ATCGAT | 1 cut(s) | 1576 |
| BspEI | TCCGGA | 1 cut(s) | 1196 |
| BspLI | GGNNCC | 6 cut(s) | 68, 323, 834, 1399, 1729, 2003 |
| BspPI | GGATC | 4 cut(s) | 90, 1093, 2648, 2684 |
| BspQI | GCTCTTC | 1 cut(s) | 966 |
| BspT104I | TTCGAA | 1 cut(s) | 541 |
| BspT107I | GGYRCC | 2 cut(s) | 321, 1727 |
| BspTI | CTTAAG | 1 cut(s) | 421 |
| BsrBI | CCGCTC | 1 cut(s) | 251 |
| BsrDI | GCAATG | 2 cut(s) | 369, 2235 |
| BsrFI | RCCGGY | 1 cut(s) | 2094 |
| BsrGI | TGTACA | 1 cut(s) | 1054 |
| BsrI | ACTGG | 4 cut(s) | 178, 2194, 2574, 2653 |
| BssAI | RCCGGY | 1 cut(s) | 2094 |
| BssECI | CCNNGG | 5 cut(s) | 1136, 1824, 2005, 2590, 2605 |
| BssMI | GATC | 9 cut(s) | 95, 740, 1085, 1219, 1552, 1573, 1844, 2653, 2689 |
| BssT1I | CCWWGG | 3 cut(s) | 1136, 1824, 2590 |
| Bst2UI | CCWGG | 5 cut(s) | 562, 1077, 1913, 2007, 2061 |
| Bst6I | CTCTTC | 3 cut(s) | 248, 966, 2524 |
| BstAFI | CTTAAG | 1 cut(s) | 421 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 518, 2052, 2405, 2618 |
| BstAUI | TGTACA | 1 cut(s) | 1054 |
| BstBI | TTCGAA | 1 cut(s) | 541 |
| BstDSI | CCRYGG | 2 cut(s) | 1824, 2590 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 424, 1910 |
| BstH2I | RGCGCY | 1 cut(s) | 893 |
| BstHHI | GCGC | 1 cut(s) | 892 |
| BstKTI | GATC | 9 cut(s) | 98, 743, 1088, 1222, 1555, 1576, 1847, 2656, 2692 |
| BstMAI | GTCTC | 5 cut(s) | 853, 1007, 1273, 1857, 2150 |
| BstMBI | GATC | 9 cut(s) | 95, 740, 1085, 1219, 1552, 1573, 1844, 2653, 2689 |
| BstNI | CCWGG | 5 cut(s) | 562, 1077, 1913, 2007, 2061 |
| BstNSI | RCATGY | 6 cut(s) | 157, 1049, 1266, 1606, 1877, 2403 |
| BstSCI | CCNGG | 7 cut(s) | 560, 1075, 1118, 1911, 2005, 2059, 2604 |
| BstSFI | CTRYAG | 2 cut(s) | 1281, 2116 |
| BstSLI | GKGCMC | 1 cut(s) | 2410 |
| BstV1I | GCAGC | 6 cut(s) | 564, 1554, 1777, 1882, 2036, 2608 |
| BstV2I | GAAGAC | 1 cut(s) | 207 |
| BstX2I | RGATCY | 1 cut(s) | 2689 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2131 |
| BstYI | RGATCY | 1 cut(s) | 2689 |
| Bsu15I | ATCGAT | 1 cut(s) | 1576 |
| Bsu36I | CCTNAGG | 1 cut(s) | 273 |
| BsuTUI | ATCGAT | 1 cut(s) | 1576 |
| BtgI | CCRYGG | 2 cut(s) | 1824, 2590 |
| BtgZI | GCGATG | 1 cut(s) | 2679 |
| BtsI | GCAGTG | 2 cut(s) | 477, 519 |
| BtsIMutI | CAGTG | 8 cut(s) | 39, 51, 171, 477, 519, 1296, 1988, 2125 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2066, 2648 |
| CfoI | GCGC | 1 cut(s) | 892 |
| Cfr10I | RCCGGY | 1 cut(s) | 2094 |
| Cfr13I | GGNCC | 7 cut(s) | 641, 720, 1035, 1162, 2063, 2222, 2330 |
| ClaI | ATCGAT | 1 cut(s) | 1576 |
| CsiI | ACCWGGT | 1 cut(s) | 560 |
| Csp6I | GTAC | 5 cut(s) | 609, 1008, 1055, 1533, 2415 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 945, 980, 1467, 1502 |
| CviQI | GTAC | 5 cut(s) | 609, 1008, 1055, 1533, 2415 |
| DpnI | GATC | 9 cut(s) | 97, 742, 1087, 1221, 1554, 1575, 1846, 2655, 2691 |
| DpnII | GATC | 9 cut(s) | 95, 740, 1085, 1219, 1552, 1573, 1844, 2653, 2689 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2638 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2638 |
| EaeI | YGGCCR | 2 cut(s) | 175, 2602 |
| Eam1104I | CTCTTC | 3 cut(s) | 248, 966, 2524 |
| EarI | CTCTTC | 3 cut(s) | 248, 966, 2524 |
| EciI | GGCGGA | 1 cut(s) | 35 |
| Ecl136II | GAGCTC | 1 cut(s) | 190 |
| Eco130I | CCWWGG | 3 cut(s) | 1136, 1824, 2590 |
| Eco147I | AGGCCT | 3 cut(s) | 753, 1474, 2347 |
| Eco24I | GRGCYC | 2 cut(s) | 192, 433 |
| Eco32I | GATATC | 2 cut(s) | 289, 460 |
| Eco47I | GGWCC | 5 cut(s) | 641, 720, 1035, 2063, 2330 |
| Eco53kI | GAGCTC | 1 cut(s) | 190 |
| Eco57I | CTGAAG | 4 cut(s) | 896, 1764, 2286, 2310 |
| Eco81I | CCTNAGG | 1 cut(s) | 273 |
| EcoICRI | GAGCTC | 1 cut(s) | 190 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 424, 1910 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2063, 2330 |
| EcoRII | CCWGG | 5 cut(s) | 560, 1075, 1911, 2005, 2059 |
| EcoRV | GATATC | 2 cut(s) | 289, 460 |
| EcoT14I | CCWWGG | 3 cut(s) | 1136, 1824, 2590 |
| EcoT22I | ATGCAT | 3 cut(s) | 592, 1551, 1879 |
| EcoT38I | GRGCYC | 2 cut(s) | 192, 433 |
| ErhI | CCWWGG | 3 cut(s) | 1136, 1824, 2590 |
| Esp3I | CGTCTC | 1 cut(s) | 1857 |
| FaqI | GGGAC | 2 cut(s) | 254, 1421 |
| FauI | CCCGC | 3 cut(s) | 43, 107, 241 |
| FauNDI | CATATG | 1 cut(s) | 1090 |
| FbaI | TGATCA | 1 cut(s) | 1552 |
| Fnu4HI | GCNGC | 6 cut(s) | 578, 1568, 1766, 1871, 2025, 2622 |
| FriOI | GRGCYC | 2 cut(s) | 192, 433 |
| Fsp4HI | GCNGC | 6 cut(s) | 578, 1568, 1766, 1871, 2025, 2622 |
| FspBI | CTAG | 5 cut(s) | 315, 522, 1137, 1787, 2259 |
| GlaI | GCGC | 1 cut(s) | 891 |
| GluI | GCNGC | 6 cut(s) | 578, 1568, 1766, 1871, 2025, 2622 |
| GsuI | CTGGAG | 3 cut(s) | 870, 1902, 2043 |
| HaeII | RGCGCY | 1 cut(s) | 893 |
| HapII | CCGG | 5 cut(s) | 707, 1119, 1197, 2095, 2605 |
| HhaI | GCGC | 1 cut(s) | 892 |
| Hin6I | GCGC | 1 cut(s) | 890 |
| HinP1I | GCGC | 1 cut(s) | 890 |
| HincII | GTYRAC | 3 cut(s) | 413, 487, 2172 |
| HindII | GTYRAC | 3 cut(s) | 413, 487, 2172 |
| HindIII | AAGCTT | 2 cut(s) | 1632, 1776 |
| HpaII | CCGG | 5 cut(s) | 707, 1119, 1197, 2095, 2605 |
| HphI | GGTGA | 9 cut(s) | 154, 238, 868, 1169, 1214, 1605, 1640, 1651, 2663 |
| Hpy99I | CGWCG | 1 cut(s) | 1899 |
| HpyAV | CCTTC | 8 cut(s) | 83, 353, 548, 743, 955, 1718, 2325, 2664 |
| HpyCH4IV | ACGT | 2 cut(s) | 299, 1412 |
| HpySE526I | ACGT | 2 cut(s) | 299, 1412 |
| HspAI | GCGC | 1 cut(s) | 890 |
| Kpn2I | TCCGGA | 1 cut(s) | 1196 |
| KroI | GCCGGC | 1 cut(s) | 2094 |
| KroNI | GCCGGC | 1 cut(s) | 2096 |
| Ksp22I | TGATCA | 1 cut(s) | 1552 |
| Kzo9I | GATC | 9 cut(s) | 95, 740, 1085, 1219, 1552, 1573, 1844, 2653, 2689 |
| LguI | GCTCTTC | 1 cut(s) | 966 |
| LmnI | GCTCC | 5 cut(s) | 187, 256, 889, 1699, 2007 |
| Lsp1109I | GCAGC | 6 cut(s) | 564, 1554, 1777, 1882, 2036, 2608 |
| MabI | ACCWGGT | 1 cut(s) | 560 |
| MaeI | CTAG | 5 cut(s) | 315, 522, 1137, 1787, 2259 |
| MaeII | ACGT | 2 cut(s) | 299, 1412 |
| MaeIII | GTNAC | 8 cut(s) | 160, 169, 847, 998, 1465, 1703, 2029, 2629 |
| MalI | GATC | 9 cut(s) | 97, 742, 1087, 1221, 1554, 1575, 1846, 2655, 2691 |
| MbiI | CCGCTC | 1 cut(s) | 251 |
| MboI | GATC | 9 cut(s) | 95, 740, 1085, 1219, 1552, 1573, 1844, 2653, 2689 |
| MboII | GAAGA | 9 cut(s) | 212, 235, 983, 1185, 2292, 2316, 2463, 2482, 2541 |
| MfeI | CAATTG | 2 cut(s) | 766, 2308 |
| MflI | RGATCY | 1 cut(s) | 2689 |
| MhlI | GDGCHC | 3 cut(s) | 192, 433, 2410 |
| MlsI | TGGCCA | 1 cut(s) | 177 |
| MluNI | TGGCCA | 1 cut(s) | 177 |
| MlyI | GAGTC | 7 cut(s) | 611, 1222, 1444, 1473, 1589, 2152, 2590 |
| MmeI | TCCRAC | 5 cut(s) | 264, 1402, 1942, 2269, 2558 |
| Mox20I | TGGCCA | 1 cut(s) | 177 |
| Mph1103I | ATGCAT | 3 cut(s) | 592, 1551, 1879 |
| MroI | TCCGGA | 1 cut(s) | 1196 |
| MroNI | GCCGGC | 1 cut(s) | 2094 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2191 |
| MscI | TGGCCA | 1 cut(s) | 177 |
| MseI | TTAA | 2 cut(s) | 422, 726 |
| MslI | CAYNNNNRTG | 1 cut(s) | 854 |
| Msp20I | TGGCCA | 1 cut(s) | 177 |
| MspA1I | CMGCKG | 2 cut(s) | 1280, 2027 |
| MspCI | CTTAAG | 1 cut(s) | 421 |
| MspI | CCGG | 5 cut(s) | 707, 1119, 1197, 2095, 2605 |
| MspR9I | CCNGG | 7 cut(s) | 562, 1077, 1120, 1913, 2007, 2061, 2606 |
| MunI | CAATTG | 2 cut(s) | 766, 2308 |
| Mva1269I | GAATGC | 1 cut(s) | 2296 |
| MvaI | CCWGG | 5 cut(s) | 562, 1077, 1913, 2007, 2061 |
| NaeI | GCCGGC | 1 cut(s) | 2096 |
| NciI | CCSGG | 2 cut(s) | 1120, 2606 |
| NcoI | CCATGG | 2 cut(s) | 1824, 2590 |
| NdeI | CATATG | 1 cut(s) | 1090 |
| NdeII | GATC | 9 cut(s) | 95, 740, 1085, 1219, 1552, 1573, 1844, 2653, 2689 |
| NgoMIV | GCCGGC | 1 cut(s) | 2094 |
| NlaIV | GGNNCC | 6 cut(s) | 68, 323, 834, 1399, 1729, 2003 |
| NmuCI | GTSAC | 6 cut(s) | 160, 169, 847, 1465, 1703, 2629 |
| NsiI | ATGCAT | 3 cut(s) | 592, 1551, 1879 |
| NspI | RCATGY | 6 cut(s) | 157, 1049, 1266, 1606, 1877, 2403 |
| NspV | TTCGAA | 1 cut(s) | 541 |
| OliI | CACNNNNGTG | 1 cut(s) | 854 |
| PaeI | GCATGC | 3 cut(s) | 1049, 1606, 1877 |
| PceI | AGGCCT | 3 cut(s) | 753, 1474, 2347 |
| PciSI | GCTCTTC | 1 cut(s) | 966 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 165 |
| PctI | GAATGC | 1 cut(s) | 2296 |
| PdiI | GCCGGC | 1 cut(s) | 2096 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2191 |
| PfeI | GAWTC | 6 cut(s) | 478, 1202, 1385, 1457, 2077, 2719 |
| Pfl23II | CGTACG | 1 cut(s) | 1007 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 184, 1258 |
| PfoI | TCCNGGA | 1 cut(s) | 1075 |
| PkrI | GCNGC | 6 cut(s) | 579, 1569, 1767, 1872, 2026, 2623 |
| PleI | GAGTC | 7 cut(s) | 610, 1221, 1444, 1472, 1589, 2152, 2589 |
| PpsI | GAGTC | 7 cut(s) | 610, 1221, 1444, 1472, 1589, 2152, 2589 |
| PpuMI | RGGWCCY | 2 cut(s) | 2063, 2330 |
| PsiI | TTATAA | 1 cut(s) | 809 |
| Psp124BI | GAGCTC | 1 cut(s) | 192 |
| Psp5II | RGGWCCY | 2 cut(s) | 2063, 2330 |
| Psp6I | CCWGG | 5 cut(s) | 560, 1075, 1911, 2005, 2059 |
| PspGI | CCWGG | 5 cut(s) | 560, 1075, 1911, 2005, 2059 |
| PspLI | CGTACG | 1 cut(s) | 1007 |
| PspN4I | GGNNCC | 6 cut(s) | 68, 323, 834, 1399, 1729, 2003 |
| PspPI | GGNCC | 7 cut(s) | 641, 720, 1035, 1162, 2063, 2222, 2330 |
| PspPPI | RGGWCCY | 2 cut(s) | 2063, 2330 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2416, 2448 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2066, 2648 |
| PsuI | RGATCY | 1 cut(s) | 2689 |
| PvuII | CAGCTG | 2 cut(s) | 1280, 2027 |
| RsaI | GTAC | 5 cut(s) | 610, 1009, 1056, 1534, 2416 |
| RsaNI | GTAC | 5 cut(s) | 609, 1008, 1055, 1533, 2415 |
| RseI | CAYNNNNRTG | 1 cut(s) | 854 |
| SacI | GAGCTC | 1 cut(s) | 192 |
| SapI | GCTCTTC | 1 cut(s) | 966 |
| SaqAI | TTAA | 2 cut(s) | 422, 726 |
| SatI | GCNGC | 6 cut(s) | 578, 1568, 1766, 1871, 2025, 2622 |
| Sau3AI | GATC | 9 cut(s) | 95, 740, 1085, 1219, 1552, 1573, 1844, 2653, 2689 |
| Sau96I | GGNCC | 7 cut(s) | 641, 720, 1035, 1162, 2063, 2222, 2330 |
| SchI | GAGTC | 7 cut(s) | 611, 1222, 1444, 1473, 1589, 2152, 2590 |
| ScrFI | CCNGG | 7 cut(s) | 562, 1077, 1120, 1913, 2007, 2061, 2606 |
| SduI | GDGCHC | 3 cut(s) | 192, 433, 2410 |
| SexAI | ACCWGGT | 1 cut(s) | 560 |
| SfcI | CTRYAG | 2 cut(s) | 1281, 2116 |
| SfuI | TTCGAA | 1 cut(s) | 541 |
| SinI | GGWCC | 5 cut(s) | 641, 720, 1035, 2063, 2330 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 854 |
| SmlI | CTYRAG | 2 cut(s) | 421, 1597 |
| SmoI | CTYRAG | 2 cut(s) | 421, 1597 |
| SphI | GCATGC | 3 cut(s) | 1049, 1606, 1877 |
| SseBI | AGGCCT | 3 cut(s) | 753, 1474, 2347 |
| SspMI | CTAG | 5 cut(s) | 315, 522, 1137, 1787, 2259 |
| SstI | GAGCTC | 1 cut(s) | 192 |
| StuI | AGGCCT | 3 cut(s) | 753, 1474, 2347 |
| StyD4I | CCNGG | 7 cut(s) | 560, 1075, 1118, 1911, 2005, 2059, 2604 |
| StyI | CCWWGG | 3 cut(s) | 1136, 1824, 2590 |
| TaiI | ACGT | 2 cut(s) | 302, 1415 |
| TaqI | TCGA | 9 cut(s) | 192, 541, 789, 1576, 1847, 1894, 2335, 2342, 2567 |
| TatI | WGTACW | 2 cut(s) | 1054, 2414 |
| TfiI | GAWTC | 6 cut(s) | 478, 1202, 1385, 1457, 2077, 2719 |
| Tru1I | TTAA | 2 cut(s) | 422, 726 |
| Tru9I | TTAA | 2 cut(s) | 422, 726 |
| TscAI | CASTG | 8 cut(s) | 39, 51, 178, 477, 519, 1303, 1988, 2125 |
| TseFI | GTSAC | 6 cut(s) | 160, 169, 847, 1465, 1703, 2629 |
| TseI | GCWGC | 6 cut(s) | 577, 1567, 1765, 1870, 2024, 2621 |
| Tsp45I | GTSAC | 6 cut(s) | 160, 169, 847, 1465, 1703, 2629 |
| TspDTI | ATGAA | 8 cut(s) | 762, 974, 982, 1431, 1724, 1787, 1945, 2372 |
| TspGWI | ACGGA | 2 cut(s) | 157, 1025 |
| TspRI | CASTG | 8 cut(s) | 39, 51, 178, 477, 519, 1303, 1988, 2125 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 184, 1258 |
| Vha464I | CTTAAG | 1 cut(s) | 421 |
| VneI | GTGCAC | 1 cut(s) | 2406 |
| VpaK11BI | GGWCC | 5 cut(s) | 641, 720, 1035, 2063, 2330 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 424, 1910 |
| XapI | RAATTY | 5 cut(s) | 194, 713, 1187, 1951, 2456 |
| XceI | RCATGY | 6 cut(s) | 157, 1049, 1266, 1606, 1877, 2403 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2597 |
| XmaJI | CCTAGG | 1 cut(s) | 1136 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2191 |
| XspI | CTAG | 5 cut(s) | 315, 522, 1137, 1787, 2259 |
| Zsp2I | ATGCAT | 3 cut(s) | 592, 1551, 1879 |