Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006666

Physical Location & Seq

Genomic Coordinates Reverse (-)

39837822 .. 39847177

Gene Structure 9356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG320000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGTCTCGCGGCGTGCGGGTGCTGAACGTGGCGGAGAAGCCGTCGGTGGCGAAGTCGGTGGCGAACATACTGTCTCGGGGCCAAGGGCTTCGAATGAGAGAAGGCCGATCGCGCTACAACAAAATCTACGAGTTCAACTACTCCATCAATGGCTGCCCTTGCCAGATGCTCTTCACCTCCGTCACCGGCCACCTCATGGAGCTCGAATTCGAAGACCGCTACCGCAAGTGGCACTCCTGCGATCCCGTCCTTCTCTTTCAGGCTCCCGTCCGCAAGTTCGTCCCTGAGGACAAGTTGGATATCAAAAGGACTTTAGAGGAGGAAGCTAGGATGTGCCAGTGGCTTGTATTATGGCTTGACTGTGATAGAGAAGGAGAGAACATTGCATTTGAAGTCATAGATGTCTGCACATCTGTAAATCGTCATCTTACCATTAAGAGGGCTCGTTTCTCAGCATTGATTGACAGGGATATCCATCGTGCAGTGCAAAATCTTGACAATGCAAACAAATACTTTGCTGATGCGGTGGATGCTAGGCAAGAAATAGATCTACGGATTGGTGCTTCATTTACCAGGTTTCAGACTATGCTCCTGAGAGATGTGTTTGTTATTGATTCTGCTACGGATGACAGAAACCTTGTTCTAAGTTATGGTCCTTGTCAGTTCCCTACACTTGGCTTTATTGTGGAACGGTATTGGGAGATACAGTCACATGAGCCCGAGGAATTTTGGACCATTAACTGTTCACATAGATCAGATGAAGGAATTGCGACATTCAGTTGGATGCGTGGCCATTTTTTTGATCATGCTTGTGCTGTCATAATCTATGAGATGTGTGTTGAGGAGCCTACCGCAACTGTCACAAAGGTCAGACAACAGGAGAAGCTGAAGTATCCTCCATATCCTTTGAATACCATTGAGCTTGAAAAGCGTGCGTCAAGATACTTTCGAATGAGTTCTGAACATACTATGAAGGTAGCAGAAGAGCTTTACCAATCTGGTTTCATCAGTTATCCTCGCACAGAGACCGATGGCTTCTCTCCAAATACTGATTTGCATGCAATTGTACAAGAACAACAAGGGCATCCTGGATGGGGATCGTATGCACAGCGATTGTTGGACCCTGCTTCTGGGCTTTGGAGAAACCCTAGTAGTGGTGGACATGATGACAAGGCCCATCCACCTATTCACCCAACCAAATTTTCTTCTGGAGAATCAAGATGGAGTCAAGATCACAATCGACTGTATGAGCTGGTTGTTCGCCATTTTCTGGCATGTGTCTCACAGCCAGCTGTAGGGGCTGAAACTACTGTTGAAATAGATATTGCTGGCGAAATGTTCTCTGCATCTGGGAGAGTGATACTGGCGAAAAATTACTTAGATGTGTATCGCTTTGAATCATGGGGAGGTTCACTGCTACCAACATATGCTGTTGGACAACAGTTTATCCCAACAACGTTGACTCTTGATTCAGGAGTCACGAGGCCTCCACCACTTTTGAGTGAAGCTGATTTGCTGGGTTGTATGGACAAGGAGGGCATTGGTACAGATGCAACAATGCATGATCACATTAAAAAACTGCTTGATCGTTTTTATGCAACCAAGGACTCAAATACACGTTTCTCACCAACCAATCTGGGTGAAGCATTGGTGATGGGATATGATGACATGGGGTATAAACTCTGGAAACCCTACCTTAGAGCTGTTATGGAGCGTGACATGAAAGCAGTTAGCGAAGGTAATAAGAGCAAAGCTGAAGTTTTGGAAACTTGCTTGCAGCAAATGAAAGCCTGCTTCGTTGATGCGAGGCTGAACAAAGTAAAACTTTTTGAAGCCATGGGAGTGTTCTTTGAGAGATCAAATAGACCTGGTGGAGATGAGCAGCATGCATCTGGAGAGTTCATTCGACGATGTGGACACTGCCAGGAAGCGGATATGGTGCTTAGGAAAAATCGGGATGGAAATTTTATGGCGGGATGCATGGGTTATCCTCAGTGTAGGAATGCTATCTGGCTCCCTGGATCTGTATCAGAAGCAGCTGTAACAACTAACGTTTGCAACTCATGCACTCCAGGTCCTGTTTACTTGATTCAATTTACATTTCGCCGGCTGGAAATACCACCGAACTATAGTACCAACCATTTGGGTAAGTGCAAGTCTATAGTAAGATGGGGAATGCCTCAATATATTACCTACCTTTTCTTTCTGCTTGCCCCTAATTTTCAGATATCCAACAGATTAGCTCCTATATCTCATCTTATGTACACCCCATTTATTAGAGAATTCCAACATATATATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003917 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0016604 GO:0016605 GO:0016853 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim zf-C4_Topoisom zf-CCHC zf-GRF

Protein Analysis

767

Amino Acids

87.73

Weight (kDa)

6.56

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Toprim	PF01751	8 - 152	1.7e-12	Toprim domain
Topoisom_bac	PF01131	170 - 588	1.4e-109	DNA topoisomerase
Zn_ribbon_Top1	PF01396	636 - 673	3e-08	Topoisomerase DNA binding C4 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63920
fragaria_vesca	FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710 FvH4_1g24710
malus_domestica	MD15G1134700.v1.1
prunus_persica	Prupe.4G275500_v2.0.a1 Prupe.4G275500_v2.0.a1
pyrus_communis	pycom15g12120 pycom15g12150
rosa_chinensis	RchiOBHm_Chr2g0122231
rosa_laevigata	RLG00000018671
rosa_roxburghii	Rroxscaffold_2G00121760
rosa_rugosa	Rorug02G0237200
rosa_samantha	Rh2AG296000 Rh2BG304900 Rh2CG283300 Rh2DG320000
rosa_wichuraiana	Rw1G008520 Rw2G023570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	196, 1270
AccII	CGCG	2 cut(s)	9, 112
AclI	AACGTT	2 cut(s)	1457, 2052
AclWI	GGATC	3 cut(s)	236, 1105, 2029
AcoI	YGGCCR	2 cut(s)	187, 790
AcsI	RAATTY	5 cut(s)	206, 725, 1199, 1963, 2282
AcuI	CTGAAG	2 cut(s)	908, 1776
AfaI	GTAC	4 cut(s)	1068, 1546, 2134, 2264
AfiI	CCNNNNNNNGG	9 cut(s)	196, 438, 674, 1094, 1130, 1154, 1270, 1295, 1930
AflIII	ACRYGT	1 cut(s)	1616
AgsI	TTSAA	8 cut(s)	136, 392, 910, 926, 1316, 1397, 1832, 2093
AjnI	CCWGG	6 cut(s)	572, 1087, 1867, 1923, 2017, 2071
AjuI	GAANNNNNNNTTGG	2 cut(s)	1186, 1218
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	4 cut(s)	9, 78, 1019, 1285
AlwI	GGATC	3 cut(s)	236, 1105, 2029
AlwNI	CAGNNNCTG	1 cut(s)	2078
Ama87I	CYCGRG	2 cut(s)	75, 719
AoxI	GGCC	6 cut(s)	79, 103, 187, 790, 1173, 1484
ApeKI	GCWGC	4 cut(s)	153, 1777, 1882, 2036
ApoI	RAATTY	5 cut(s)	206, 725, 1199, 1963, 2282
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	1 cut(s)	955
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	6 cut(s)	79, 653, 732, 1120, 1174, 2075
AsuHPI	GGTGA	6 cut(s)	166, 175, 1181, 1617, 1652, 1663
AsuII	TTCGAA	3 cut(s)	91, 210, 949
AvaI	CYCGRG	2 cut(s)	75, 719
AvaII	GGWCC	4 cut(s)	653, 732, 1120, 2075
AxyI	CCTNAGG	1 cut(s)	285
BaeI	ACNNNNGTAYC	2 cut(s)	2116, 2149
BalI	TGGCCA	1 cut(s)	792
BanII	GRGCYC	3 cut(s)	204, 445, 720
BauI	CACGAG	1 cut(s)	1480
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	4 cut(s)	140, 1789, 1894, 2048
BccI	CCATC	9 cut(s)	152, 483, 1025, 1086, 1185, 1215, 1648, 1952, 2163
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	6 cut(s)	574, 1089, 1869, 1925, 2019, 2073
BciVI	GTATCC	1 cut(s)	903
BclI	TGATCA	2 cut(s)	802, 1564
BcoDI	GTCTC	4 cut(s)	9, 78, 1019, 1285
BfaI	CTAG	3 cut(s)	327, 534, 1149
BfmI	CTRYAG	3 cut(s)	1293, 2128, 2160
BfuI	GTATCC	1 cut(s)	903
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	5 cut(s)	10, 154, 1778, 1883, 2037
BlsI	GCNGC	5 cut(s)	11, 155, 1779, 1884, 2038
Bme1390I	CCNGG	6 cut(s)	574, 1089, 1869, 1925, 2019, 2073
Bme18I	GGWCC	4 cut(s)	653, 732, 1120, 2075
BmeT110I	CYCGRG	2 cut(s)	75, 719
BmgT120I	GGNCC	6 cut(s)	79, 653, 732, 1120, 1174, 2075
BmiI	GGNNCC	5 cut(s)	80, 264, 846, 1122, 2015
BmrFI	CCNGG	6 cut(s)	574, 1089, 1869, 1925, 2019, 2073
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	3 cut(s)	1230, 1914, 2055
Bpu10I	CCTNAGC	1 cut(s)	1943
Bpu14I	TTCGAA	3 cut(s)	91, 210, 949
BsaBI	GATNNNNATC	5 cut(s)	474, 1096, 1236, 1386, 2026
BsaI	GGTCTC	1 cut(s)	1019
BsaJI	CCNNGG	5 cut(s)	82, 720, 1602, 1836, 2017
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 692, 722, 1471, 1501
Bsc4I	CCNNNNNNNGG	9 cut(s)	196, 438, 674, 1094, 1130, 1154, 1270, 1295, 1930
Bse118I	RCCGGY	2 cut(s)	185, 2106
Bse1I	ACTGG	2 cut(s)	337, 1368
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	5 cut(s)	474, 1096, 1236, 1386, 2026
BseBI	CCWGG	6 cut(s)	574, 1089, 1869, 1925, 2019, 2073
BseDI	CCNNGG	5 cut(s)	82, 720, 1602, 1836, 2017
BseGI	GGATG	9 cut(s)	336, 535, 631, 789, 1084, 1097, 1177, 1963, 1982
BseJI	GATNNNNATC	5 cut(s)	474, 1096, 1236, 1386, 2026
BseLI	CCNNNNNNNGG	9 cut(s)	196, 438, 674, 1094, 1130, 1154, 1270, 1295, 1930
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	4 cut(s)	276, 465, 584, 2006
BseNI	ACTGG	2 cut(s)	337, 1368
BseRI	GAGGAG	2 cut(s)	332, 857
BseXI	GCAGC	4 cut(s)	140, 1789, 1894, 2048
BseYI	CCCAGC	1 cut(s)	1516
BsgI	GTGCAG	2 cut(s)	391, 501
Bsh1236I	CGCG	2 cut(s)	9, 112
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	6 cut(s)	81, 105, 189, 792, 1175, 1486
BsiEI	CGRYCG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	2 cut(s)	75, 719
BsiSI	CCGG	2 cut(s)	186, 2107
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	9 cut(s)	196, 438, 674, 1094, 1130, 1154, 1270, 1295, 1930
BsmAI	GTCTC	4 cut(s)	9, 78, 1019, 1285
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	2 cut(s)	2008, 2181
BsnI	GGCC	6 cut(s)	81, 105, 189, 792, 1175, 1486
Bso31I	GGTCTC	1 cut(s)	1019
BsoBI	CYCGRG	2 cut(s)	75, 719
Bsp119I	TTCGAA	3 cut(s)	91, 210, 949
Bsp1286I	GDGCHC	3 cut(s)	204, 445, 720
Bsp1407I	TGTACA	2 cut(s)	1066, 2262
Bsp19I	CCATGG	1 cut(s)	1836
BspANI	GGCC	6 cut(s)	81, 105, 189, 792, 1175, 1486
BspCNI	CTCAG	4 cut(s)	277, 464, 585, 2005
BspFNI	CGCG	2 cut(s)	9, 112
BspLI	GGNNCC	5 cut(s)	80, 264, 846, 1122, 2015
BspPI	GGATC	3 cut(s)	236, 1105, 2029
BspQI	GCTCTTC	2 cut(s)	176, 978
BspT104I	TTCGAA	3 cut(s)	91, 210, 949
BspTNI	GGTCTC	1 cut(s)	1019
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	2 cut(s)	185, 2106
BsrGI	TGTACA	2 cut(s)	1066, 2262
BsrI	ACTGG	2 cut(s)	337, 1368
BssAI	RCCGGY	2 cut(s)	185, 2106
BssECI	CCNNGG	5 cut(s)	82, 720, 1602, 1836, 2017
BssSI	CACGAG	1 cut(s)	1480
BssT1I	CCWWGG	3 cut(s)	82, 1602, 1836
Bst2BI	CACGAG	1 cut(s)	1480
Bst2UI	CCWGG	6 cut(s)	574, 1089, 1869, 1925, 2019, 2073
Bst4CI	ACNGT	9 cut(s)	72, 362, 693, 708, 743, 859, 1245, 1312, 1443
Bst6I	CTCTTC	2 cut(s)	176, 978
BstAPI	GCANNNNNTGC	1 cut(s)	2064
BstAUI	TGTACA	2 cut(s)	1066, 2262
BstBI	TTCGAA	3 cut(s)	91, 210, 949
BstDEI	CTNAG	8 cut(s)	285, 451, 593, 644, 1378, 1697, 1943, 1992
BstDSI	CCRYGG	1 cut(s)	1836
BstF5I	GGATG	9 cut(s)	336, 535, 631, 789, 1084, 1097, 1177, 1963, 1982
BstFNI	CGCG	2 cut(s)	9, 112
BstHHI	GCGC	1 cut(s)	114
BstMAI	GTCTC	4 cut(s)	9, 78, 1019, 1285
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 159, 530, 928, 1298, 2064
BstNI	CCWGG	6 cut(s)	574, 1089, 1869, 1925, 2019, 2073
BstNSI	RCATGY	3 cut(s)	1061, 1278, 1889
BstSCI	CCNGG	6 cut(s)	572, 1087, 1867, 1923, 2017, 2071
BstSFI	CTRYAG	3 cut(s)	1293, 2128, 2160
BstUI	CGCG	2 cut(s)	9, 112
BstV1I	GCAGC	4 cut(s)	140, 1789, 1894, 2048
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	2 cut(s)	547, 2021
BstXI	CCANNNNNNTGG	1 cut(s)	2143
BstYI	RGATCY	2 cut(s)	547, 2021
Bsu36I	CCTNAGG	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	903
BsuRI	GGCC	6 cut(s)	81, 105, 189, 792, 1175, 1486
BtgI	CCRYGG	1 cut(s)	1836
BtsCI	GGATG	9 cut(s)	336, 535, 631, 789, 1084, 1097, 1177, 1963, 1982
BtsI	GCAGTG	3 cut(s)	489, 1412, 1918
BtsIMutI	CAGTG	5 cut(s)	344, 489, 1412, 1918, 2000
CaiI	CAGNNNCTG	1 cut(s)	2078
CfoI	GCGC	1 cut(s)	114
Cfr10I	RCCGGY	2 cut(s)	185, 2106
Cfr13I	GGNCC	6 cut(s)	79, 653, 732, 1120, 1174, 2075
CseI	GACGC	1 cut(s)	924
CsiI	ACCWGGT	2 cut(s)	572, 1867
Csp6I	GTAC	4 cut(s)	1067, 1545, 2133, 2263
CspCI	CAANNNNNGTGG	2 cut(s)	1479, 1514
CviQI	GTAC	4 cut(s)	1067, 1545, 2133, 2263
DdeI	CTNAG	8 cut(s)	285, 451, 593, 644, 1378, 1697, 1943, 1992
EaeI	YGGCCR	2 cut(s)	187, 790
Eam1104I	CTCTTC	2 cut(s)	176, 978
EarI	CTCTTC	2 cut(s)	176, 978
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	3 cut(s)	82, 1602, 1836
Eco147I	AGGCCT	1 cut(s)	1486
Eco24I	GRGCYC	3 cut(s)	204, 445, 720
Eco31I	GGTCTC	1 cut(s)	1019
Eco32I	GATATC	3 cut(s)	301, 472, 2229
Eco47I	GGWCC	4 cut(s)	653, 732, 1120, 2075
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	908, 1776
Eco81I	CCTNAGG	1 cut(s)	285
Eco88I	CYCGRG	2 cut(s)	75, 719
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	2075
EcoRI	GAATTC	2 cut(s)	206, 2282
EcoRII	CCWGG	6 cut(s)	572, 1087, 1867, 1923, 2017, 2071
EcoRV	GATATC	3 cut(s)	301, 472, 2229
EcoT14I	CCWWGG	3 cut(s)	82, 1602, 1836
EcoT22I	ATGCAT	3 cut(s)	1563, 1891, 1982
EcoT38I	GRGCYC	3 cut(s)	204, 445, 720
ErhI	CCWWGG	3 cut(s)	82, 1602, 1836
FalI	AAGNNNNNCTT	2 cut(s)	1809, 1841
FaqI	GGGAC	1 cut(s)	266
FauI	CCCGC	2 cut(s)	9, 1966
FauNDI	CATATG	1 cut(s)	1426
FbaI	TGATCA	2 cut(s)	802, 1564
Fnu4HI	GCNGC	5 cut(s)	10, 154, 1778, 1883, 2037
FokI	GGATG	9 cut(s)	343, 542, 638, 796, 1071, 1104, 1164, 1970, 1989
FriOI	GRGCYC	3 cut(s)	204, 445, 720
Fsp4HI	GCNGC	5 cut(s)	10, 154, 1778, 1883, 2037
FspBI	CTAG	3 cut(s)	327, 534, 1149
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	5 cut(s)	10, 154, 1778, 1883, 2037
GsaI	CCCAGC	1 cut(s)	1520
GsuI	CTGGAG	3 cut(s)	1230, 1914, 2055
HaeIII	GGCC	6 cut(s)	81, 105, 189, 792, 1175, 1486
HapII	CCGG	2 cut(s)	186, 2107
HgaI	GACGC	1 cut(s)	924
HhaI	GCGC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	1461
HindII	GTYRAC	1 cut(s)	1461
HinfI	GANTC	9 cut(s)	614, 1214, 1225, 1397, 1462, 1469, 1476, 1607, 2089
HpaII	CCGG	2 cut(s)	186, 2107
HphI	GGTGA	6 cut(s)	166, 175, 1181, 1617, 1652, 1663
Hpy166II	GTNNAC	7 cut(s)	746, 1160, 1412, 1461, 1916, 2083, 2265
Hpy188I	TCNGA	6 cut(s)	582, 757, 872, 961, 2032, 2226
Hpy8I	GTNNAC	7 cut(s)	746, 1160, 1412, 1461, 1916, 2083, 2265
Hpy99I	CGWCG	2 cut(s)	46, 1911
HpyAV	CCTTC	6 cut(s)	95, 260, 365, 755, 967, 1730
HpyCH4III	ACNGT	9 cut(s)	72, 362, 693, 708, 743, 859, 1245, 1312, 1443
HpyCH4IV	ACGT	4 cut(s)	27, 1457, 1618, 2052
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 159, 530, 928, 1298, 2064
HpyF3I	CTNAG	8 cut(s)	285, 451, 593, 644, 1378, 1697, 1943, 1992
HpySE526I	ACGT	4 cut(s)	27, 1457, 1618, 2052
HspAI	GCGC	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	2106
KroNI	GCCGGC	1 cut(s)	2108
Ksp22I	TGATCA	2 cut(s)	802, 1564
LguI	GCTCTTC	2 cut(s)	176, 978
LmnI	GCTCC	7 cut(s)	199, 268, 594, 844, 1711, 2019, 2248
Lsp1109I	GCAGC	4 cut(s)	140, 1789, 1894, 2048
MabI	ACCWGGT	2 cut(s)	572, 1867
MaeI	CTAG	3 cut(s)	327, 534, 1149
MaeII	ACGT	4 cut(s)	27, 1457, 1618, 2052
MaeIII	GTNAC	6 cut(s)	181, 708, 859, 1477, 1715, 2041
MboII	GAAGA	4 cut(s)	163, 224, 995, 1197
MfeI	CAATTG	1 cut(s)	1062
MflI	RGATCY	2 cut(s)	547, 2021
MhlI	GDGCHC	3 cut(s)	204, 445, 720
MlsI	TGGCCA	1 cut(s)	792
MluNI	TGGCCA	1 cut(s)	792
MlyI	GAGTC	4 cut(s)	1234, 1456, 1485, 1601
MmeI	TCCRAC	5 cut(s)	276, 761, 1098, 1414, 2256
Mox20I	TGGCCA	1 cut(s)	792
Mph1103I	ATGCAT	3 cut(s)	1563, 1891, 1982
MroNI	GCCGGC	1 cut(s)	2106
MroXI	GAANNNNTTC	1 cut(s)	955
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	3 cut(s)	435, 738, 1572
MslI	CAYNNNNRTG	3 cut(s)	810, 1841, 2295
Msp20I	TGGCCA	1 cut(s)	792
MspA1I	CMGCKG	2 cut(s)	1292, 2039
MspI	CCGG	2 cut(s)	186, 2107
MspR9I	CCNGG	6 cut(s)	574, 1089, 1869, 1925, 2019, 2073
MunI	CAATTG	1 cut(s)	1062
Mva1269I	GAATGC	2 cut(s)	2008, 2181
MvaI	CCWGG	6 cut(s)	574, 1089, 1869, 1925, 2019, 2073
MvnI	CGCG	2 cut(s)	9, 112
MwoI	GCNNNNNNNGC	6 cut(s)	111, 159, 530, 928, 1298, 2064
NaeI	GCCGGC	1 cut(s)	2108
NcoI	CCATGG	1 cut(s)	1836
NdeI	CATATG	1 cut(s)	1426
NgoMIV	GCCGGC	1 cut(s)	2106
NlaIV	GGNNCC	5 cut(s)	80, 264, 846, 1122, 2015
NmuCI	GTSAC	5 cut(s)	181, 708, 859, 1477, 1715
NsiI	ATGCAT	3 cut(s)	1563, 1891, 1982
NspI	RCATGY	3 cut(s)	1061, 1278, 1889
NspV	TTCGAA	3 cut(s)	91, 210, 949
PaeI	GCATGC	2 cut(s)	1061, 1889
PceI	AGGCCT	1 cut(s)	1486
PciSI	GCTCTTC	2 cut(s)	176, 978
PctI	GAATGC	2 cut(s)	2008, 2181
PdiI	GCCGGC	1 cut(s)	2108
PdmI	GAANNNNTTC	1 cut(s)	955
PfeI	GAWTC	5 cut(s)	614, 1214, 1397, 1469, 2089
PflMI	CCANNNNNTGG	2 cut(s)	196, 1270
PfoI	TCCNGGA	1 cut(s)	1087
PkrI	GCNGC	5 cut(s)	11, 155, 1779, 1884, 2038
Ple19I	CGATCG	1 cut(s)	110
PleI	GAGTC	4 cut(s)	1233, 1456, 1484, 1601
PpsI	GAGTC	4 cut(s)	1233, 1456, 1484, 1601
PpuMI	RGGWCCY	1 cut(s)	2075
Psp124BI	GAGCTC	1 cut(s)	204
Psp1406I	AACGTT	2 cut(s)	1457, 2052
Psp5II	RGGWCCY	1 cut(s)	2075
Psp6I	CCWGG	6 cut(s)	572, 1087, 1867, 1923, 2017, 2071
PspFI	CCCAGC	1 cut(s)	1516
PspGI	CCWGG	6 cut(s)	572, 1087, 1867, 1923, 2017, 2071
PspN4I	GGNNCC	5 cut(s)	80, 264, 846, 1122, 2015
PspPI	GGNCC	6 cut(s)	79, 653, 732, 1120, 1174, 2075
PspPPI	RGGWCCY	1 cut(s)	2075
PstNI	CAGNNNCTG	1 cut(s)	2078
PsuI	RGATCY	2 cut(s)	547, 2021
PvuI	CGATCG	1 cut(s)	110
PvuII	CAGCTG	2 cut(s)	1292, 2039
RsaI	GTAC	4 cut(s)	1068, 1546, 2134, 2264
RsaNI	GTAC	4 cut(s)	1067, 1545, 2133, 2263
RseI	CAYNNNNRTG	3 cut(s)	810, 1841, 2295
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	2 cut(s)	176, 978
SaqAI	TTAA	3 cut(s)	435, 738, 1572
SatI	GCNGC	5 cut(s)	10, 154, 1778, 1883, 2037
Sau96I	GGNCC	6 cut(s)	79, 653, 732, 1120, 1174, 2075
SchI	GAGTC	4 cut(s)	1234, 1456, 1485, 1601
ScrFI	CCNGG	6 cut(s)	574, 1089, 1869, 1925, 2019, 2073
SduI	GDGCHC	3 cut(s)	204, 445, 720
SexAI	ACCWGGT	2 cut(s)	572, 1867
SfcI	CTRYAG	3 cut(s)	1293, 2128, 2160
SfuI	TTCGAA	3 cut(s)	91, 210, 949
SinI	GGWCC	4 cut(s)	653, 732, 1120, 2075
SmiMI	CAYNNNNRTG	3 cut(s)	810, 1841, 2295
SphI	GCATGC	2 cut(s)	1061, 1889
SseBI	AGGCCT	1 cut(s)	1486
SspMI	CTAG	3 cut(s)	327, 534, 1149
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	1486
StyD4I	CCNGG	6 cut(s)	572, 1087, 1867, 1923, 2017, 2071
StyI	CCWWGG	3 cut(s)	82, 1602, 1836
TaaI	ACNGT	9 cut(s)	72, 362, 693, 708, 743, 859, 1245, 1312, 1443
TaiI	ACGT	4 cut(s)	30, 1460, 1621, 2055
TaqI	TCGA	6 cut(s)	91, 204, 210, 949, 1240, 1906
TaqII	GACCGA	1 cut(s)	1043
TatI	WGTACW	2 cut(s)	1066, 2262
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	5 cut(s)	614, 1214, 1397, 1469, 2089
Tru1I	TTAA	3 cut(s)	435, 738, 1572
Tru9I	TTAA	3 cut(s)	435, 738, 1572
TscAI	CASTG	5 cut(s)	344, 489, 1419, 1925, 2000
TseFI	GTSAC	5 cut(s)	181, 708, 859, 1477, 1715
TseI	GCWGC	4 cut(s)	153, 1777, 1882, 2036
Tsp45I	GTSAC	5 cut(s)	181, 708, 859, 1477, 1715
TspDTI	ATGAA	7 cut(s)	555, 774, 986, 994, 1736, 1799, 1891
TspGWI	ACGGA	3 cut(s)	169, 568, 638
TspRI	CASTG	5 cut(s)	344, 489, 1419, 1925, 2000
Van91I	CCANNNNNTGG	2 cut(s)	196, 1270
VpaK11BI	GGWCC	4 cut(s)	653, 732, 1120, 2075
XapI	RAATTY	5 cut(s)	206, 725, 1199, 1963, 2282
XceI	RCATGY	3 cut(s)	1061, 1278, 1889
XmnI	GAANNNNTTC	1 cut(s)	955
XspI	CTAG	3 cut(s)	327, 534, 1149
Zsp2I	ATGCAT	3 cut(s)	1563, 1891, 1982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.