FvH4_1g26060

Annexin repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016740
Physical Location & Seq
Reverse (-)
17966073 .. 17968038
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26060.t1

Sequence Viewer

Length: 951 bp
ATGGCTACATTATCAGTGCCTGATCAGGTTCCTCCTGTGGCCGAAGACTCTGAAAATCTTCATAAAGCAATGCAAGGATGGGGAGCTGACGGGAAAGCACTCATATCCATATTGGCTCACCGGAATGGAAGGCAGCGTTGTTCGATACGTCAAGCTTATGCAGAGAAATATGGAGAGGTTTTTTCCAAAGAGCTTGAGAAAAAACTTTCCGGTGACTTTCTGAGGTCAATGCTTGTATGGACGCCACACCCAGCTGAACGAGATGCAATGCTAGCTTATGAAGCTGTTATGAATAAAAAGTCAGAAGCCTATTTTGTGATAATGGAAATTGGTTGTACAAGAACGTCTCAAGAGCTCTTTGAGGTGAGACAAGACTACCTTGCTCGCTGCAAGAGATCTCTAGAAGAAGATGTTGCTTACCGCACGAGTGAAGAAATCCGAAAGCTGTTAGTTCCTCTTGTTACTAGTTACAGGTATGAACCTCAGGACGAGACACAGGTGGATACTGAGATGGTGAACTCGGAGGCTAAAATTCTTCATGAGGTAGTCTCCCACAAGGACTATGGTCATGAGGAGCTAATCAGAATTCTAACTACTAGGAGCAAGCCACAGTTGAGAGCAACTCTCAAAAGCTATTACGACCAGTTTGGCAATCCTATTAACAAGGACCTCAAGAACAAGCCAAAGGATGAATACCTTGCTTTGCTGAGAGCCACCATAAAATGCTTGACTTGCCCGGAGAAGTATTTCGAGAAGACTCTTCGTCTGTCCATGAAAGGCCTCGGAACTGATGAAGAGACTCTAACCAGAGTGGTAGCCACTCGAGCCGAGGTTGACATGAAGCATATAAAGGAACAGTACGAGCGGAAGAATAATGTTTCTATGGTTGATGACATCAAAGGTGATACTTCTGGTGACTATCTGAGGATCTTGCTTGCCTTAGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

317

Amino Acids

36.37

Weight (kDa)

6.43

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 16 - 79 3e-17 Annexin
Annexin PF00191 87 - 153 3.8e-10 Annexin
Annexin PF00191 175 - 234 4e-10 Annexin
Annexin PF00191 249 - 314 1.5e-19 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016740)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26060
malus_domestica MD05G1045300.v1.1
prunus_persica Prupe.8G062100_v2.0.a1 Prupe.8G062100_v2.0.a1
pyrus_communis pycom05g03780
rosa_chinensis RchiOBHm_Chr3g0485531
rosa_laevigata RLG00000023145
rosa_roxburghii Rroxscaffold_6G00396670
rosa_rugosa Rorug03G0219800
rosa_samantha Rh3AG268300 Rh3BG304000 Rh3CG302300 Rh3DG298900
rosa_wichuraiana Rw3G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 865
AciI CCGC 2 cut(s) 421, 865
AclWI GGATC 1 cut(s) 935
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 2 cut(s) 531, 585
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 2 cut(s) 337, 860
AhdI GACNNNNNGTC 1 cut(s) 762
AhlI ACTAGT 1 cut(s) 464
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 5 cut(s) 351, 361, 485, 553, 791
AlwI GGATC 1 cut(s) 935
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 822
AoxI GGCC 2 cut(s) 39, 778
ApeKI GCWGC 2 cut(s) 133, 387
ApoI RAATTY 2 cut(s) 531, 585
Asp700I GAANNNNTTC 2 cut(s) 57, 746
AspS9I GGNCC 1 cut(s) 667
AsuC2I CCSGG 1 cut(s) 737
AsuHPI GGTGA 6 cut(s) 110, 224, 376, 526, 914, 926
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 822
AvaII GGWCC 1 cut(s) 667
AxyI CCTNAGG 1 cut(s) 483
BanII GRGCYC 1 cut(s) 357
BauI CACGAG 1 cut(s) 424
BbsI GAAGAC 2 cut(s) 51, 761
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 145, 374
BccI CCATC 2 cut(s) 72, 505
BciVI GTATCC 1 cut(s) 496
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 737
BcoDI GTCTC 5 cut(s) 351, 361, 485, 553, 791
BcuI ACTAGT 1 cut(s) 464
BfaI CTAG 4 cut(s) 272, 401, 465, 597
BfuI GTATCC 1 cut(s) 496
BglII AGATCT 1 cut(s) 395
BisI GCNGC 2 cut(s) 134, 388
BlsI GCNGC 2 cut(s) 135, 389
Bme1390I CCNGG 1 cut(s) 737
Bme18I GGWCC 1 cut(s) 667
BmeRI GACNNNNNGTC 1 cut(s) 762
BmeT110I CYCGRG 1 cut(s) 822
BmgT120I GGNCC 1 cut(s) 667
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 737
BmsI GCATC 1 cut(s) 253
BmtI GCTAGC 1 cut(s) 275
BoxI GACNNNNGTC 1 cut(s) 564
BpiI GAAGAC 2 cut(s) 51, 761
BplI GAGNNNNNCTC 6 cut(s) 533, 565, 607, 639, 609, 641
BpuEI CTTGAG 3 cut(s) 215, 333, 656
BpuMI CCSGG 1 cut(s) 737
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 781, 828
BsaWI WCCGGW 2 cut(s) 120, 209
Bse1I ACTGG 1 cut(s) 643
Bse21I CCTNAGG 1 cut(s) 483
Bse3DI GCAATG 2 cut(s) 75, 273
BseDI CCNNGG 2 cut(s) 781, 828
BseGI GGATG 2 cut(s) 83, 694
BseMI GCAATG 2 cut(s) 75, 273
BseMII CTCAG 5 cut(s) 212, 497, 498, 698, 914
BseNI ACTGG 1 cut(s) 643
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 2 cut(s) 145, 374
BseYI CCCAGC 1 cut(s) 250
BshFI GGCC 2 cut(s) 41, 780
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 822
BsiSI CCGG 3 cut(s) 121, 210, 737
BsmAI GTCTC 5 cut(s) 351, 361, 485, 553, 791
BsmBI CGTCTC 1 cut(s) 351
BsnI GGCC 2 cut(s) 41, 780
BsoBI CYCGRG 1 cut(s) 822
Bsp1286I GDGCHC 1 cut(s) 357
Bsp1407I TGTACA 1 cut(s) 335
Bsp143I GATC 3 cut(s) 22, 395, 927
BspACI CCGC 2 cut(s) 421, 865
BspANI GGCC 2 cut(s) 41, 780
BspCNI CTCAG 5 cut(s) 213, 496, 499, 699, 915
BspHI TCATGA 2 cut(s) 538, 568
BspLI GGNNCC 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 1 cut(s) 935
BsrBI CCGCTC 1 cut(s) 865
BsrDI GCAATG 2 cut(s) 75, 273
BsrGI TGTACA 1 cut(s) 335
BsrI ACTGG 1 cut(s) 643
BssECI CCNNGG 2 cut(s) 781, 828
BssMI GATC 3 cut(s) 22, 395, 927
BssNI GRCGYC 1 cut(s) 242
BssSI CACGAG 1 cut(s) 424
Bst2BI CACGAG 1 cut(s) 424
Bst4CI ACNGT 2 cut(s) 612, 858
Bst6I CTCTTC 2 cut(s) 765, 789
BstACI GRCGYC 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 335
BstC8I GCNNGC 4 cut(s) 273, 385, 605, 936
BstDEI CTNAG 6 cut(s) 221, 483, 507, 707, 923, 940
BstF5I GGATG 2 cut(s) 83, 694
BstKTI GATC 3 cut(s) 25, 398, 930
BstMAI GTCTC 5 cut(s) 351, 361, 485, 553, 791
BstMBI GATC 3 cut(s) 22, 395, 927
BstMWI GCNNNNNNNGC 4 cut(s) 272, 281, 732, 824
BstPAI GACNNNNGTC 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 735
BstV1I GCAGC 2 cut(s) 145, 374
BstV2I GAAGAC 2 cut(s) 51, 761
BstX2I RGATCY 2 cut(s) 395, 927
BstYI RGATCY 2 cut(s) 395, 927
Bsu36I CCTNAGG 1 cut(s) 483
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 2 cut(s) 41, 780
BtsCI GGATG 2 cut(s) 83, 694
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 4 cut(s) 273, 385, 605, 936
CaiI CAGNNNCTG 1 cut(s) 20
CciI TCATGA 2 cut(s) 538, 568
Cfr13I GGNCC 1 cut(s) 667
CseI GACGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 336, 859
CviAII CATG 4 cut(s) 539, 569, 772, 838
CviQI GTAC 2 cut(s) 336, 859
DdeI CTNAG 6 cut(s) 221, 483, 507, 707, 923, 940
DpnI GATC 3 cut(s) 24, 397, 929
DpnII GATC 3 cut(s) 22, 395, 927
DriI GACNNNNNGTC 1 cut(s) 762
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 765, 789
Eam1105I GACNNNNNGTC 1 cut(s) 762
EarI CTCTTC 2 cut(s) 765, 789
Ecl136II GAGCTC 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 780
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 667
Eco53kI GAGCTC 1 cut(s) 355
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 822
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 4 cut(s) 542, 572, 775, 841
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FatI CATG 4 cut(s) 538, 568, 771, 837
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 134, 388
FokI GGATG 2 cut(s) 90, 701
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 134, 388
FspBI CTAG 4 cut(s) 272, 401, 465, 597
GluI GCNGC 2 cut(s) 134, 388
GsaI CCCAGC 1 cut(s) 254
HaeIII GGCC 2 cut(s) 41, 780
HapII CCGG 3 cut(s) 121, 210, 737
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 4 cut(s) 542, 572, 775, 841
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 3 cut(s) 47, 757, 799
HpaII CCGG 3 cut(s) 121, 210, 737
HphI GGTGA 6 cut(s) 110, 224, 376, 526, 914, 926
Hpy166II GTNNAC 2 cut(s) 517, 835
Hpy188I TCNGA 8 cut(s) 52, 222, 304, 440, 523, 584, 785, 924
Hpy188III TCNNGA 7 cut(s) 350, 401, 485, 539, 569, 673, 751
Hpy8I GTNNAC 2 cut(s) 517, 835
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 2 cut(s) 612, 858
HpyCH4IV ACGT 2 cut(s) 148, 344
HpyCH4V TGCA 4 cut(s) 73, 161, 266, 390
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 281, 732, 824
HpyF3I CTNAG 6 cut(s) 221, 483, 507, 707, 923, 940
HpySE526I ACGT 2 cut(s) 148, 344
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 4 cut(s) 542, 572, 775, 841
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 22, 395, 927
LmnI GCTCC 3 cut(s) 83, 574, 600
Lsp1109I GCAGC 2 cut(s) 145, 374
LweI GCATC 1 cut(s) 253
MaeI CTAG 4 cut(s) 272, 401, 465, 597
MaeII ACGT 2 cut(s) 148, 344
MaeIII GTNAC 4 cut(s) 212, 460, 467, 914
MalI GATC 3 cut(s) 24, 397, 929
MbiI CCGCTC 1 cut(s) 865
MboI GATC 3 cut(s) 22, 395, 927
MfeI CAATTG 1 cut(s) 946
MflI RGATCY 2 cut(s) 395, 927
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 4 cut(s) 327, 531, 585, 946
MlyI GAGTC 3 cut(s) 41, 751, 793
MroXI GAANNNNTTC 2 cut(s) 57, 746
MseI TTAA 1 cut(s) 660
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 3 cut(s) 121, 210, 737
MspR9I CCNGG 1 cut(s) 737
MunI CAATTG 1 cut(s) 946
MwoI GCNNNNNNNGC 4 cut(s) 272, 281, 732, 824
NciI CCSGG 1 cut(s) 737
NdeII GATC 3 cut(s) 22, 395, 927
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 4 cut(s) 542, 572, 775, 841
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 2 cut(s) 212, 914
PaeR7I CTCGAG 1 cut(s) 822
PagI TCATGA 2 cut(s) 538, 568
PceI AGGCCT 1 cut(s) 780
PdmI GAANNNNTTC 2 cut(s) 57, 746
PkrI GCNGC 2 cut(s) 135, 389
PleI GAGTC 3 cut(s) 41, 751, 793
PpsI GAGTC 3 cut(s) 41, 751, 793
PpuMI RGGWCCY 1 cut(s) 667
PshAI GACNNNNGTC 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 667
PspFI CCCAGC 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 667
PspPPI RGGWCCY 1 cut(s) 667
PspXI VCTCGAGB 1 cut(s) 822
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 2 cut(s) 395, 927
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 337, 860
RsaNI GTAC 2 cut(s) 336, 859
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 2 cut(s) 134, 388
Sau3AI GATC 3 cut(s) 22, 395, 927
Sau96I GGNCC 1 cut(s) 667
SchI GAGTC 3 cut(s) 41, 751, 793
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 1 cut(s) 357
SfaNI GCATC 1 cut(s) 253
Sfr274I CTCGAG 1 cut(s) 822
SinI GGWCC 1 cut(s) 667
SlaI CTCGAG 1 cut(s) 822
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 4 cut(s) 194, 348, 671, 822
SmoI CTYRAG 4 cut(s) 194, 348, 671, 822
SpeI ACTAGT 1 cut(s) 464
Sse9I AATT 4 cut(s) 327, 531, 585, 946
SseBI AGGCCT 1 cut(s) 780
SsiI CCGC 2 cut(s) 421, 865
SspMI CTAG 4 cut(s) 272, 401, 465, 597
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 780
StyD4I CCNGG 1 cut(s) 735
TaaI ACNGT 2 cut(s) 612, 858
TaiI ACGT 2 cut(s) 151, 347
TaqI TCGA 3 cut(s) 143, 750, 823
TasI AATT 4 cut(s) 327, 531, 585, 946
TatI WGTACW 1 cut(s) 335
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 2 cut(s) 212, 914
TseI GCWGC 2 cut(s) 133, 387
Tsp45I GTSAC 2 cut(s) 212, 914
TspDTI ATGAA 9 cut(s) 50, 294, 305, 492, 527, 705, 788, 807, 854
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 667
XapI RAATTY 2 cut(s) 531, 585
XbaI TCTAGA 1 cut(s) 400
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XhoI CTCGAG 1 cut(s) 822
XmnI GAANNNNTTC 2 cut(s) 57, 746
XspI CTAG 4 cut(s) 272, 401, 465, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.