Rroxscaffold_6G00396670

Annexin repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016740
Physical Location & Seq
Forward (+)
18159510 .. 18160892
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396670.1

Sequence Viewer

Length: 840 bp
ATGGCTACATTTTCAATGCCCGATCATGTTCCTCCAGTGGCTGAAGACTGTGAAAAGCTTCGTAAAGCAATGCAAGGATGGGGAACAGATGAGAACGCAATCATATCCATATTGGCTCACCGGAATGCAAGGCAGCGTTGTTCTATACGTCAAACTTATACTGAGAAATATGGAGAGGATTTGTTCAACGAGCTTGAAAAAGAACTTTCCGGTGATTTTCTGAGGGCAATGCTTGTATGGACGCCACATCCTGCTGAACGAGATGCAATGCTAGCCAAAGAAGCTGCTACGAATAAAAAGTCAGTAGACTATTTTGTGATAATGGAAATTGGTTGTACAAGAACGTCTCAGGAGCTCTTCCAGGTGAGACTAGACTACCATGCTCGCTACAAGAGATCTCTAGAAGAAGATGTTTCTTGTGGCACGAGTGGAGATTTCCGAAAGCTGTTAGTTCCTCTTGTGACTTGTTACAGGTATGAACCTCACGATGAAAGTTTGGATACTGAGTTGGTGAACTCGGAGGCTAAGATCCTTCATGACAAAATCTCCCACAAGGACTATAGTCATGAGGAGATTATCAGAATTCTAACTACTAGGAGCAAGCCACACTTGAGAGCAACGCTCCAAAACTATAACGGCCAGTTTACTCTTCGTCTGTCCATGAAAGGCCTTGGAACCAATGAAGAGACTCTTACCAGGGTGGTAACCACTCGAGCCGAGGTTGACATGAAGCATATAATGGAACAGTACCAACGGAAGAACAACGTTTCATTGGATAATGACATCAAAGGTGATACTTCTAGTGACTATAAGACGATGTTGCTGGCCTTAATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

279

Amino Acids

32.2

Weight (kDa)

6.09

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 16 - 79 7.6e-23 Annexin
Annexin PF00191 88 - 153 1.5e-14 Annexin
Annexin PF00191 174 - 214 7.5e-07 Annexin
Annexin PF00191 216 - 277 4.5e-19 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016740)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26060
malus_domestica MD05G1045300.v1.1
prunus_persica Prupe.8G062100_v2.0.a1 Prupe.8G062100_v2.0.a1
pyrus_communis pycom05g03780
rosa_chinensis RchiOBHm_Chr3g0485531
rosa_laevigata RLG00000023145
rosa_roxburghii Rroxscaffold_6G00396670
rosa_rugosa Rorug03G0219800
rosa_samantha Rh3AG268300 Rh3BG304000 Rh3CG302300 Rh3DG298900
rosa_wichuraiana Rw3G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AclI AACGTT 1 cut(s) 765
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 1 cut(s) 582
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 2 cut(s) 337, 749
AgsI TTSAA 3 cut(s) 15, 187, 197
AjnI CCWGG 2 cut(s) 360, 695
AluBI AGCT 5 cut(s) 58, 193, 284, 355, 445
AluI AGCT 5 cut(s) 58, 193, 284, 355, 445
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 351, 361, 680
AlwI GGATC 1 cut(s) 523
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 3 cut(s) 637, 667, 825
ApeKI GCWGC 2 cut(s) 133, 284
ApoI RAATTY 1 cut(s) 582
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp700I GAANNNNTTC 1 cut(s) 57
AsuHPI GGTGA 5 cut(s) 110, 224, 376, 523, 803
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 711
BanII GRGCYC 1 cut(s) 357
BauI CACGAG 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 145, 271
BccI CCATC 1 cut(s) 72
BceAI ACGGC 1 cut(s) 652
BciT130I CCWGG 2 cut(s) 362, 697
BciVI GTATCC 1 cut(s) 493
BcoDI GTCTC 3 cut(s) 351, 361, 680
BfaI CTAG 5 cut(s) 272, 371, 401, 594, 801
BfmI CTRYAG 1 cut(s) 559
BfuI GTATCC 1 cut(s) 493
BglII AGATCT 1 cut(s) 395
BisI GCNGC 2 cut(s) 134, 285
BlsI GCNGC 2 cut(s) 135, 286
Bme1390I CCNGG 2 cut(s) 362, 697
BmeT110I CYCGRG 1 cut(s) 711
BmiI GGNNCC 1 cut(s) 676
BmrFI CCNGG 2 cut(s) 362, 697
BmsI GCATC 1 cut(s) 253
BmtI GCTAGC 1 cut(s) 275
BoxI GACNNNNGTC 1 cut(s) 561
BpiI GAAGAC 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 606, 638
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 631
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 670, 696, 717
BsaWI WCCGGW 2 cut(s) 120, 209
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bse1I ACTGG 2 cut(s) 35, 640
Bse3DI GCAATG 3 cut(s) 75, 234, 273
BseBI CCWGG 2 cut(s) 362, 697
BseDI CCNNGG 3 cut(s) 670, 696, 717
BseGI GGATG 2 cut(s) 83, 247
BseMI GCAATG 3 cut(s) 75, 234, 273
BseMII CTCAG 4 cut(s) 153, 212, 362, 495
BseNI ACTGG 2 cut(s) 35, 640
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 2 cut(s) 145, 271
BshFI GGCC 3 cut(s) 639, 669, 827
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 711
BsiSI CCGG 2 cut(s) 121, 210
BsmAI GTCTC 3 cut(s) 351, 361, 680
BsmBI CGTCTC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 3 cut(s) 639, 669, 827
BsoBI CYCGRG 1 cut(s) 711
Bsp1286I GDGCHC 1 cut(s) 357
Bsp1407I TGTACA 1 cut(s) 335
Bsp143I GATC 3 cut(s) 22, 395, 528
BspANI GGCC 3 cut(s) 639, 669, 827
BspCNI CTCAG 4 cut(s) 154, 213, 361, 496
BspHI TCATGA 2 cut(s) 535, 565
BspLI GGNNCC 1 cut(s) 676
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 1 cut(s) 523
BspQI GCTCTTC 1 cut(s) 362
BsrDI GCAATG 3 cut(s) 75, 234, 273
BsrGI TGTACA 1 cut(s) 335
BsrI ACTGG 2 cut(s) 35, 640
BssECI CCNNGG 3 cut(s) 670, 696, 717
BssMI GATC 3 cut(s) 22, 395, 528
BssNI GRCGYC 1 cut(s) 242
BssSI CACGAG 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 670
Bst2BI CACGAG 1 cut(s) 424
Bst2UI CCWGG 2 cut(s) 362, 697
Bst4CI ACNGT 2 cut(s) 50, 747
Bst6I CTCTTC 3 cut(s) 362, 654, 678
BstACI GRCGYC 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 335
BstC8I GCNNGC 4 cut(s) 273, 385, 602, 825
BstDEI CTNAG 5 cut(s) 162, 221, 348, 504, 525
BstEII GGTNACC 1 cut(s) 703
BstF5I GGATG 2 cut(s) 83, 247
BstKTI GATC 3 cut(s) 25, 398, 531
BstMAI GTCTC 3 cut(s) 351, 361, 680
BstMBI GATC 3 cut(s) 22, 395, 528
BstMWI GCNNNNNNNGC 2 cut(s) 272, 281
BstNI CCWGG 2 cut(s) 362, 697
BstPAI GACNNNNGTC 1 cut(s) 561
BstPI GGTNACC 1 cut(s) 703
BstSCI CCNGG 2 cut(s) 360, 695
BstSFI CTRYAG 1 cut(s) 559
BstV1I GCAGC 2 cut(s) 145, 271
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 395, 528
BstYI RGATCY 2 cut(s) 395, 528
BsuI GTATCC 1 cut(s) 493
BsuRI GGCC 3 cut(s) 639, 669, 827
BtsCI GGATG 2 cut(s) 83, 247
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 4 cut(s) 273, 385, 602, 825
CaiI CAGNNNCTG 1 cut(s) 41
CciI TCATGA 2 cut(s) 535, 565
CseI GACGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 336, 748
CviAII CATG 6 cut(s) 26, 380, 536, 566, 661, 727
CviQI GTAC 2 cut(s) 336, 748
DdeI CTNAG 5 cut(s) 162, 221, 348, 504, 525
DpnI GATC 3 cut(s) 24, 397, 530
DpnII GATC 3 cut(s) 22, 395, 528
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 3 cut(s) 362, 654, 678
EarI CTCTTC 3 cut(s) 362, 654, 678
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 670
Eco147I AGGCCT 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 711
Eco91I GGTNACC 1 cut(s) 703
EcoICRI GAGCTC 1 cut(s) 355
EcoO65I GGTNACC 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 360, 695
EcoT14I CCWWGG 1 cut(s) 670
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 670
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 6 cut(s) 29, 383, 539, 569, 664, 730
FalI AAGNNNNNCTT 4 cut(s) 593, 625, 675, 707
FatI CATG 6 cut(s) 25, 379, 535, 565, 660, 726
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 134, 285
FokI GGATG 2 cut(s) 90, 234
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 134, 285
FspBI CTAG 5 cut(s) 272, 371, 401, 594, 801
GluI GCNGC 2 cut(s) 134, 285
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 3 cut(s) 639, 669, 827
HapII CCGG 2 cut(s) 121, 210
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 6 cut(s) 29, 383, 539, 569, 664, 730
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 688
HpaII CCGG 2 cut(s) 121, 210
HphI GGTGA 5 cut(s) 110, 224, 376, 523, 803
Hpy166II GTNNAC 4 cut(s) 307, 514, 645, 724
Hpy188I TCNGA 4 cut(s) 222, 440, 520, 581
Hpy188III TCNNGA 5 cut(s) 350, 401, 485, 536, 566
Hpy8I GTNNAC 4 cut(s) 307, 514, 645, 724
HpyAV CCTTC 1 cut(s) 542
HpyCH4III ACNGT 2 cut(s) 50, 747
HpyCH4IV ACGT 3 cut(s) 148, 344, 765
HpyCH4V TGCA 3 cut(s) 73, 128, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 281
HpyF3I CTNAG 5 cut(s) 162, 221, 348, 504, 525
HpySE526I ACGT 3 cut(s) 148, 344, 765
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 6 cut(s) 29, 383, 539, 569, 664, 730
Kzo9I GATC 3 cut(s) 22, 395, 528
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 3 cut(s) 352, 597, 627
Lsp1109I GCAGC 2 cut(s) 145, 271
LweI GCATC 1 cut(s) 253
MaeI CTAG 5 cut(s) 272, 371, 401, 594, 801
MaeII ACGT 3 cut(s) 148, 344, 765
MaeIII GTNAC 4 cut(s) 460, 467, 703, 803
MalI GATC 3 cut(s) 24, 397, 530
MboI GATC 3 cut(s) 22, 395, 528
MboII GAAGA 7 cut(s) 56, 349, 416, 419, 641, 695, 769
MfeI CAATTG 1 cut(s) 835
MflI RGATCY 2 cut(s) 395, 528
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 3 cut(s) 327, 582, 835
MlyI GAGTC 1 cut(s) 682
MnlI CCTC 8 cut(s) 42, 169, 216, 465, 492, 514, 562, 712
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 1 cut(s) 830
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 2 cut(s) 121, 210
MspR9I CCNGG 2 cut(s) 362, 697
MunI CAATTG 1 cut(s) 835
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 2 cut(s) 362, 697
MwoI GCNNNNNNNGC 2 cut(s) 272, 281
NdeII GATC 3 cut(s) 22, 395, 528
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 6 cut(s) 29, 383, 539, 569, 664, 730
NlaIV GGNNCC 1 cut(s) 676
NmeAIII GCCGAG 1 cut(s) 742
NmuCI GTSAC 2 cut(s) 460, 803
PaeR7I CTCGAG 1 cut(s) 711
PagI TCATGA 2 cut(s) 535, 565
PceI AGGCCT 1 cut(s) 669
PciSI GCTCTTC 1 cut(s) 362
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 135, 286
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PshAI GACNNNNGTC 1 cut(s) 561
Psp124BI GAGCTC 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 765
Psp6I CCWGG 2 cut(s) 360, 695
PspEI GGTNACC 1 cut(s) 703
PspGI CCWGG 2 cut(s) 360, 695
PspN4I GGNNCC 1 cut(s) 676
PspXI VCTCGAGB 1 cut(s) 711
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 2 cut(s) 395, 528
RsaI GTAC 2 cut(s) 337, 749
RsaNI GTAC 2 cut(s) 336, 748
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 830
SatI GCNGC 2 cut(s) 134, 285
Sau3AI GATC 3 cut(s) 22, 395, 528
SchI GAGTC 1 cut(s) 682
ScrFI CCNGG 2 cut(s) 362, 697
SduI GDGCHC 1 cut(s) 357
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 559
Sfr274I CTCGAG 1 cut(s) 711
SlaI CTCGAG 1 cut(s) 711
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 610, 711
SmoI CTYRAG 2 cut(s) 610, 711
Sse9I AATT 3 cut(s) 327, 582, 835
SseBI AGGCCT 1 cut(s) 669
SspMI CTAG 5 cut(s) 272, 371, 401, 594, 801
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 669
StyD4I CCNGG 2 cut(s) 360, 695
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 2 cut(s) 50, 747
TaiI ACGT 3 cut(s) 151, 347, 768
TaqI TCGA 1 cut(s) 712
TasI AATT 3 cut(s) 327, 582, 835
TatI WGTACW 1 cut(s) 335
Tru1I TTAA 1 cut(s) 830
Tru9I TTAA 1 cut(s) 830
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 2 cut(s) 460, 803
TseI GCWGC 2 cut(s) 133, 284
Tsp45I GTSAC 2 cut(s) 460, 803
TspDTI ATGAA 7 cut(s) 492, 504, 524, 677, 696, 743, 759
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 1 cut(s) 42
XapI RAATTY 1 cut(s) 582
XbaI TCTAGA 1 cut(s) 400
XhoI CTCGAG 1 cut(s) 711
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 5 cut(s) 272, 371, 401, 594, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.