Rh3AG268300

Annexin repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016740
Physical Location & Seq
Reverse (-)
30548648 .. 30550443
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG268300.1

Sequence Viewer

Length: 921 bp
ATGTTCATGCGGTTAGTTATTTACTTGGTGATCTGCAGCAGCCTGATAGGATGGGGAACAGATGAGAACGCAATCATATCCATATTGGCTCACCGGAATGCAAGGCAGCGTTGTTCTATACGTCAAACTTATACGGAGAAATATGGAGAGGATTTGTTCAACGAGCTTGAAAAAGAACTTTCCGGTGATTTTCTGAGGGCAATGCTTGTATGGACGCCACATCCTGCTGAACGAGATGCAATGCTAGCCAAAGAATTTGCTACGAATAAAAAGTCAGAAGGCTATTTTGTGATAATGGAAATTGGTTGTACAAGAACGTCTCAAGAGCTCTTCCAGGTGAGACAAGACTACCATGCTCGCTACAAGAGATCTCTAGAAGAAGATGTTTCTTGTGGCACGAGTGGAGATTTCCGAAAGCTGTTAGTTCCTCTTGTGACTTGTTACAGGTATGAACCTCACGATGAAAGTGTGGATACTGAGTTGGTGAACTCGGAGGCTAAGATCCTTCATGACAAAATCTCCCACAAGGACTATAGTCATGAGGAGATTATCAGAATTCTAACTACTAGGAGCAAGCCGCACTTGAGAGCAACGCTCCAAAACTATAACGACCAGTTTGGTCATCCTATTAACAAGGACCTCAAGAAGCATCGAAAGGATGAATACCTTGCTTTGCTGAGAGCCACTGTAAAATGCTTGACTTGCCCTGAGAAATATTTCGAGAAGACTCTTCGTCTGTCCATGAAAGGCATCGGAACCAATGAAGAGACTCTTACCAGGGTGGTAACCACTCGAGCCGAGGTTGACATGAAGCATATAATGGAACAGTACCAACGGAAGAACAACGTTTCAATGGATAATGACATCAAAGGTGATACTTCTAGTGACTATCGGACGATGTTGCTGGCCTTAATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

306

Amino Acids

35.69

Weight (kDa)

7.16

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 15 - 70 1.3e-17 Annexin
Annexin PF00191 87 - 144 4.5e-13 Annexin
Annexin PF00191 165 - 226 4e-12 Annexin
Annexin PF00191 239 - 304 6.6e-19 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016740)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26060
malus_domestica MD05G1045300.v1.1
prunus_persica Prupe.8G062100_v2.0.a1 Prupe.8G062100_v2.0.a1
pyrus_communis pycom05g03780
rosa_chinensis RchiOBHm_Chr3g0485531
rosa_laevigata RLG00000023145
rosa_roxburghii Rroxscaffold_6G00396670
rosa_rugosa Rorug03G0219800
rosa_samantha Rh3AG268300 Rh3BG304000 Rh3CG302300 Rh3DG298900
rosa_wichuraiana Rw3G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 10, 578
AclI AACGTT 1 cut(s) 846
AclWI GGATC 1 cut(s) 496
AcsI RAATTY 2 cut(s) 254, 555
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 2 cut(s) 310, 830
AgsI TTSAA 3 cut(s) 160, 170, 852
AhdI GACNNNNNGTC 1 cut(s) 732
AjnI CCWGG 2 cut(s) 333, 776
AluBI AGCT 3 cut(s) 166, 328, 418
AluI AGCT 3 cut(s) 166, 328, 418
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 3 cut(s) 324, 334, 761
AlwI GGATC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 792
AoxI GGCC 1 cut(s) 906
ApeKI GCWGC 3 cut(s) 36, 39, 106
ApoI RAATTY 2 cut(s) 254, 555
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
Asp700I GAANNNNTTC 1 cut(s) 716
AspS9I GGNCC 1 cut(s) 637
AsuHPI GGTGA 6 cut(s) 40, 83, 197, 349, 496, 884
AsuNHI GCTAGC 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 792
AvaII GGWCC 1 cut(s) 637
BanII GRGCYC 1 cut(s) 330
BauI CACGAG 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 3 cut(s) 48, 51, 118
BccI CCATC 1 cut(s) 45
BciT130I CCWGG 2 cut(s) 335, 778
BciVI GTATCC 1 cut(s) 466
BcoDI GTCTC 3 cut(s) 324, 334, 761
BfaI CTAG 4 cut(s) 245, 374, 567, 882
BfmI CTRYAG 2 cut(s) 34, 532
BfuI GTATCC 1 cut(s) 466
BglII AGATCT 1 cut(s) 368
BisI GCNGC 4 cut(s) 37, 40, 107, 578
BlsI GCNGC 4 cut(s) 38, 41, 108, 579
Bme1390I CCNGG 2 cut(s) 335, 778
Bme18I GGWCC 1 cut(s) 637
BmeRI GACNNNNNGTC 1 cut(s) 732
BmeT110I CYCGRG 1 cut(s) 792
BmgT120I GGNCC 1 cut(s) 637
BmiI GGNNCC 1 cut(s) 757
BmrFI CCNGG 2 cut(s) 335, 778
BmsI GCATC 3 cut(s) 226, 658, 759
BmtI GCTAGC 1 cut(s) 248
BoxI GACNNNNGTC 1 cut(s) 534
BpiI GAAGAC 1 cut(s) 731
BplI GAGNNNNNCTC 2 cut(s) 579, 611
BpuEI CTTGAG 3 cut(s) 306, 604, 626
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 777, 798
BsaWI WCCGGW 2 cut(s) 93, 182
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bse1I ACTGG 1 cut(s) 613
Bse3DI GCAATG 2 cut(s) 207, 246
BseBI CCWGG 2 cut(s) 335, 778
BseDI CCNNGG 2 cut(s) 777, 798
BseGI GGATG 4 cut(s) 56, 220, 622, 664
BseMI GCAATG 2 cut(s) 207, 246
BseMII CTCAG 4 cut(s) 185, 468, 668, 699
BseNI ACTGG 1 cut(s) 613
BseRI GAGGAG 1 cut(s) 557
BseXI GCAGC 3 cut(s) 48, 51, 118
BshFI GGCC 1 cut(s) 908
BsiHKAI GWGCWC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 792
BsiSI CCGG 2 cut(s) 94, 183
BsmAI GTCTC 3 cut(s) 324, 334, 761
BsmBI CGTCTC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 1 cut(s) 908
BsoBI CYCGRG 1 cut(s) 792
Bsp1286I GDGCHC 1 cut(s) 330
Bsp1407I TGTACA 1 cut(s) 308
Bsp143I GATC 3 cut(s) 30, 368, 501
BspACI CCGC 2 cut(s) 10, 578
BspANI GGCC 1 cut(s) 908
BspCNI CTCAG 4 cut(s) 186, 469, 669, 700
BspHI TCATGA 2 cut(s) 508, 538
BspLI GGNNCC 1 cut(s) 757
BspMAI CTGCAG 1 cut(s) 38
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 1 cut(s) 496
BspQI GCTCTTC 1 cut(s) 335
BsrDI GCAATG 2 cut(s) 207, 246
BsrGI TGTACA 1 cut(s) 308
BsrI ACTGG 1 cut(s) 613
BssECI CCNNGG 2 cut(s) 777, 798
BssMI GATC 3 cut(s) 30, 368, 501
BssNI GRCGYC 1 cut(s) 215
BssSI CACGAG 1 cut(s) 397
Bst2BI CACGAG 1 cut(s) 397
Bst2UI CCWGG 2 cut(s) 335, 778
Bst4CI ACNGT 2 cut(s) 688, 828
Bst6I CTCTTC 3 cut(s) 335, 735, 759
BstACI GRCGYC 1 cut(s) 215
BstAUI TGTACA 1 cut(s) 308
BstC8I GCNNGC 4 cut(s) 246, 358, 575, 906
BstDEI CTNAG 5 cut(s) 194, 477, 498, 677, 708
BstEII GGTNACC 1 cut(s) 784
BstF5I GGATG 4 cut(s) 56, 220, 622, 664
BstKTI GATC 3 cut(s) 33, 371, 504
BstMAI GTCTC 3 cut(s) 324, 334, 761
BstMBI GATC 3 cut(s) 30, 368, 501
BstMWI GCNNNNNNNGC 2 cut(s) 245, 702
BstNI CCWGG 2 cut(s) 335, 778
BstPAI GACNNNNGTC 1 cut(s) 534
BstPI GGTNACC 1 cut(s) 784
BstSCI CCNGG 2 cut(s) 333, 776
BstSFI CTRYAG 2 cut(s) 34, 532
BstV1I GCAGC 3 cut(s) 48, 51, 118
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 2 cut(s) 368, 501
BstYI RGATCY 2 cut(s) 368, 501
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 1 cut(s) 908
BtsCI GGATG 4 cut(s) 56, 220, 622, 664
BtsIMutI CAGTG 1 cut(s) 684
Cac8I GCNNGC 4 cut(s) 246, 358, 575, 906
CciI TCATGA 2 cut(s) 508, 538
Cfr13I GGNCC 1 cut(s) 637
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 309, 829
CviAII CATG 6 cut(s) 7, 353, 509, 539, 742, 808
CviQI GTAC 2 cut(s) 309, 829
DdeI CTNAG 5 cut(s) 194, 477, 498, 677, 708
DpnI GATC 3 cut(s) 32, 370, 503
DpnII GATC 3 cut(s) 30, 368, 501
DriI GACNNNNNGTC 1 cut(s) 732
Eam1104I CTCTTC 3 cut(s) 335, 735, 759
Eam1105I GACNNNNNGTC 1 cut(s) 732
EarI CTCTTC 3 cut(s) 335, 735, 759
Ecl136II GAGCTC 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 637
Eco53kI GAGCTC 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 792
Eco91I GGTNACC 1 cut(s) 784
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 637
EcoO65I GGTNACC 1 cut(s) 784
EcoRI GAATTC 1 cut(s) 555
EcoRII CCWGG 2 cut(s) 333, 776
EcoT38I GRGCYC 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 324
FaeI CATG 6 cut(s) 10, 356, 512, 542, 745, 811
FalI AAGNNNNNCTT 4 cut(s) 566, 598, 756, 788
FatI CATG 6 cut(s) 6, 352, 508, 538, 741, 807
Fnu4HI GCNGC 4 cut(s) 37, 40, 107, 578
FokI GGATG 4 cut(s) 63, 207, 609, 671
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 4 cut(s) 37, 40, 107, 578
FspBI CTAG 4 cut(s) 245, 374, 567, 882
GluI GCNGC 4 cut(s) 37, 40, 107, 578
HaeIII GGCC 1 cut(s) 908
HapII CCGG 2 cut(s) 94, 183
HgaI GACGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 6 cut(s) 10, 356, 512, 542, 745, 811
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 2 cut(s) 727, 769
HpaII CCGG 2 cut(s) 94, 183
HphI GGTGA 6 cut(s) 40, 83, 197, 349, 496, 884
Hpy166II GTNNAC 2 cut(s) 487, 805
Hpy188I TCNGA 7 cut(s) 195, 277, 413, 493, 554, 755, 894
Hpy188III TCNNGA 7 cut(s) 323, 374, 458, 509, 539, 643, 721
Hpy8I GTNNAC 2 cut(s) 487, 805
HpyAV CCTTC 2 cut(s) 272, 515
HpyCH4III ACNGT 2 cut(s) 688, 828
HpyCH4IV ACGT 3 cut(s) 121, 317, 846
HpyCH4V TGCA 3 cut(s) 36, 101, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 702
HpyF3I CTNAG 5 cut(s) 194, 477, 498, 677, 708
HpySE526I ACGT 3 cut(s) 121, 317, 846
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 6 cut(s) 10, 356, 512, 542, 745, 811
Kzo9I GATC 3 cut(s) 30, 368, 501
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 2 cut(s) 570, 600
Lsp1109I GCAGC 3 cut(s) 48, 51, 118
LweI GCATC 3 cut(s) 226, 658, 759
MaeI CTAG 4 cut(s) 245, 374, 567, 882
MaeII ACGT 3 cut(s) 121, 317, 846
MaeIII GTNAC 4 cut(s) 433, 440, 784, 884
MalI GATC 3 cut(s) 32, 370, 503
MboI GATC 3 cut(s) 30, 368, 501
MboII GAAGA 7 cut(s) 322, 389, 392, 722, 736, 776, 850
MfeI CAATTG 1 cut(s) 916
MflI RGATCY 2 cut(s) 368, 501
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 4 cut(s) 254, 300, 555, 916
MlyI GAGTC 2 cut(s) 721, 763
MnlI CCTC 8 cut(s) 142, 189, 438, 465, 487, 535, 650, 793
MroXI GAANNNNTTC 1 cut(s) 716
MseI TTAA 2 cut(s) 630, 911
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 2 cut(s) 94, 183
MspR9I CCNGG 2 cut(s) 335, 778
MunI CAATTG 1 cut(s) 916
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 2 cut(s) 335, 778
MwoI GCNNNNNNNGC 2 cut(s) 245, 702
NdeII GATC 3 cut(s) 30, 368, 501
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 6 cut(s) 10, 356, 512, 542, 745, 811
NlaIV GGNNCC 1 cut(s) 757
NmeAIII GCCGAG 1 cut(s) 823
NmuCI GTSAC 2 cut(s) 433, 884
PaeR7I CTCGAG 1 cut(s) 792
PagI TCATGA 2 cut(s) 508, 538
PciSI GCTCTTC 1 cut(s) 335
PctI GAATGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 716
PkrI GCNGC 4 cut(s) 38, 41, 108, 579
PleI GAGTC 2 cut(s) 721, 763
PpsI GAGTC 2 cut(s) 721, 763
PpuMI RGGWCCY 1 cut(s) 637
PshAI GACNNNNGTC 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 330
Psp1406I AACGTT 1 cut(s) 846
Psp5II RGGWCCY 1 cut(s) 637
Psp6I CCWGG 2 cut(s) 333, 776
PspEI GGTNACC 1 cut(s) 784
PspGI CCWGG 2 cut(s) 333, 776
PspN4I GGNNCC 1 cut(s) 757
PspPI GGNCC 1 cut(s) 637
PspPPI RGGWCCY 1 cut(s) 637
PspXI VCTCGAGB 1 cut(s) 792
PstI CTGCAG 1 cut(s) 38
PsuI RGATCY 2 cut(s) 368, 501
RsaI GTAC 2 cut(s) 310, 830
RsaNI GTAC 2 cut(s) 309, 829
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 2 cut(s) 630, 911
SatI GCNGC 4 cut(s) 37, 40, 107, 578
Sau3AI GATC 3 cut(s) 30, 368, 501
Sau96I GGNCC 1 cut(s) 637
SchI GAGTC 2 cut(s) 721, 763
ScrFI CCNGG 2 cut(s) 335, 778
SduI GDGCHC 1 cut(s) 330
SfaNI GCATC 3 cut(s) 226, 658, 759
SfcI CTRYAG 2 cut(s) 34, 532
Sfr274I CTCGAG 1 cut(s) 792
SinI GGWCC 1 cut(s) 637
SlaI CTCGAG 1 cut(s) 792
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 4 cut(s) 321, 583, 641, 792
SmoI CTYRAG 4 cut(s) 321, 583, 641, 792
Sse9I AATT 4 cut(s) 254, 300, 555, 916
SsiI CCGC 2 cut(s) 10, 578
SspI AATATT 1 cut(s) 716
SspMI CTAG 4 cut(s) 245, 374, 567, 882
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 333, 776
TaaI ACNGT 2 cut(s) 688, 828
TaiI ACGT 3 cut(s) 124, 320, 849
TaqI TCGA 3 cut(s) 652, 720, 793
TasI AATT 4 cut(s) 254, 300, 555, 916
TatI WGTACW 1 cut(s) 308
TauI GCSGC 1 cut(s) 580
Tru1I TTAA 2 cut(s) 630, 911
Tru9I TTAA 2 cut(s) 630, 911
TscAI CASTG 1 cut(s) 691
TseFI GTSAC 2 cut(s) 433, 884
TseI GCWGC 3 cut(s) 36, 39, 106
Tsp45I GTSAC 2 cut(s) 433, 884
TspDTI ATGAA 7 cut(s) 465, 477, 497, 675, 758, 777, 824
TspGWI ACGGA 2 cut(s) 149, 850
TspRI CASTG 1 cut(s) 691
VpaK11BI GGWCC 1 cut(s) 637
XapI RAATTY 2 cut(s) 254, 555
XbaI TCTAGA 1 cut(s) 373
XhoI CTCGAG 1 cut(s) 792
XmnI GAANNNNTTC 1 cut(s) 716
XspI CTAG 4 cut(s) 245, 374, 567, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.