Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016740

Physical Location & Seq

Genomic Coordinates Reverse (-)

31464236 .. 31466024

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG302300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCTTGTATGGACGCCACATCCTGCTGAACGAGATGCAATGCTAGCCAAAGAAGCTGCTACGAATAAAAAGTCAGAAGGCTATTTTGTGATAATGGAAATTGGTTGTACAAGAACGTCTCAAGAGCTCTTCCAGGTGAGACAAGACTACCATGCTCGCTACAAGAGATCTCTAGAAGAAGATGTTTCTTGTGGCACGAGTGGAGATTTCCGAAAGCTGTTAGTTCCTCTTGTGACTTGTTACAGGTATGAACCTCACGATGAAAGTGTGGATACTGAGTTGGTGAACTCGGAGGCTAAGATCCTTCATGACAAAATCTCCCACAAGGACTATAGTCATGAGGAGATTATCAGAATTCTAACTACTAGGAGCAAGCCGCACTTGAGAGCAACGCTCCAAAACTATAACGACCAGTTTGGTCATCCTATTAACAAGGACCTCAAGAAGCATCGAAAGGATGAATACCTTGCTTTGCTGCGAGCCACTATAAAATGCTTGACTTGCCCTGAGAAATATTTCGAGAAGACTCTTCGTCTGTCCATGAAAGGCATCGGAACCAATGAAGAGACTCTTACCAGGGTGGTAACCACTCGAGCCGAGGTTGACATGAAGCATATAATGGAACAGTACCAACGGAAGAACAACGTTTCATTGGATAATGACATCAAAGGTGATACTTCTAGTGACTATCGGACGATGTTGCTGGCCTTAATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

239

Amino Acids

27.83

Weight (kDa)

7.68

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	12 - 77	6.2e-14	Annexin
Annexin	PF00191	98 - 159	2.6e-12	Annexin
Annexin	PF00191	172 - 237	1.4e-19	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016740)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26060
malus_domestica	MD05G1045300.v1.1
prunus_persica	Prupe.8G062100_v2.0.a1 Prupe.8G062100_v2.0.a1
pyrus_communis	pycom05g03780
rosa_chinensis	RchiOBHm_Chr3g0485531
rosa_laevigata	RLG00000023145
rosa_roxburghii	Rroxscaffold_6G00396670
rosa_rugosa	Rorug03G0219800
rosa_samantha	Rh3AG268300 Rh3BG304000 Rh3CG302300 Rh3DG298900
rosa_wichuraiana	Rw3G023930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	377
AclI	AACGTT	1 cut(s)	645
AclWI	GGATC	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	2 cut(s)	109, 629
AhdI	GACNNNNNGTC	1 cut(s)	531
AjnI	CCWGG	2 cut(s)	132, 575
AluBI	AGCT	3 cut(s)	56, 127, 217
AluI	AGCT	3 cut(s)	56, 127, 217
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	3 cut(s)	123, 133, 560
AlwI	GGATC	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	591
AoxI	GGCC	1 cut(s)	705
ApeKI	GCWGC	2 cut(s)	56, 475
ApoI	RAATTY	1 cut(s)	354
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	3 cut(s)	148, 295, 683
AsuNHI	GCTAGC	1 cut(s)	43
AvaI	CYCGRG	1 cut(s)	591
AvaII	GGWCC	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	43, 462
BciT130I	CCWGG	2 cut(s)	134, 577
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	123, 133, 560
BfaI	CTAG	4 cut(s)	44, 173, 366, 681
BfmI	CTRYAG	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	3 cut(s)	57, 377, 476
BlsI	GCNGC	3 cut(s)	58, 378, 477
Bme1390I	CCNGG	2 cut(s)	134, 577
Bme18I	GGWCC	1 cut(s)	436
BmeRI	GACNNNNNGTC	1 cut(s)	531
BmeT110I	CYCGRG	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	2 cut(s)	134, 577
BmsI	GCATC	3 cut(s)	25, 457, 558
BmtI	GCTAGC	1 cut(s)	47
BoxI	GACNNNNGTC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	530
BplI	GAGNNNNNCTC	2 cut(s)	378, 410
BpuEI	CTTGAG	3 cut(s)	105, 403, 425
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	576, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	134, 577
BseDI	CCNNGG	2 cut(s)	576, 597
BseGI	GGATG	3 cut(s)	19, 421, 463
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	267, 498
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	43, 462
BshFI	GGCC	1 cut(s)	707
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	591
BsmAI	GTCTC	3 cut(s)	123, 133, 560
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	707
BsoBI	CYCGRG	1 cut(s)	591
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	167, 300
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	2 cut(s)	268, 499
BspHI	TCATGA	2 cut(s)	307, 337
BspLI	GGNNCC	1 cut(s)	556
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	576, 597
BssMI	GATC	2 cut(s)	167, 300
BssNI	GRCGYC	1 cut(s)	14
BssSI	CACGAG	1 cut(s)	196
Bst2BI	CACGAG	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	134, 577
Bst4CI	ACNGT	1 cut(s)	627
Bst6I	CTCTTC	3 cut(s)	134, 534, 558
BstACI	GRCGYC	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	107
BstC8I	GCNNGC	5 cut(s)	45, 157, 374, 480, 705
BstDEI	CTNAG	3 cut(s)	276, 297, 507
BstEII	GGTNACC	1 cut(s)	583
BstF5I	GGATG	3 cut(s)	19, 421, 463
BstKTI	GATC	2 cut(s)	170, 303
BstMAI	GTCTC	3 cut(s)	123, 133, 560
BstMBI	GATC	2 cut(s)	167, 300
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 53, 501
BstNI	CCWGG	2 cut(s)	134, 577
BstPAI	GACNNNNGTC	1 cut(s)	333
BstPI	GGTNACC	1 cut(s)	583
BstSCI	CCNGG	2 cut(s)	132, 575
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	43, 462
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	2 cut(s)	167, 300
BstYI	RGATCY	2 cut(s)	167, 300
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	707
BtsCI	GGATG	3 cut(s)	19, 421, 463
Cac8I	GCNNGC	5 cut(s)	45, 157, 374, 480, 705
CciI	TCATGA	2 cut(s)	307, 337
Cfr13I	GGNCC	1 cut(s)	436
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	108, 628
CviAII	CATG	5 cut(s)	152, 308, 338, 541, 607
CviQI	GTAC	2 cut(s)	108, 628
DdeI	CTNAG	3 cut(s)	276, 297, 507
DpnI	GATC	2 cut(s)	169, 302
DpnII	GATC	2 cut(s)	167, 300
DriI	GACNNNNNGTC	1 cut(s)	531
Eam1104I	CTCTTC	3 cut(s)	134, 534, 558
Eam1105I	GACNNNNNGTC	1 cut(s)	531
EarI	CTCTTC	3 cut(s)	134, 534, 558
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	591
Eco91I	GGTNACC	1 cut(s)	583
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	436
EcoO65I	GGTNACC	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	354
EcoRII	CCWGG	2 cut(s)	132, 575
EcoT38I	GRGCYC	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	5 cut(s)	155, 311, 341, 544, 610
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 555, 587
FatI	CATG	5 cut(s)	151, 307, 337, 540, 606
Fnu4HI	GCNGC	3 cut(s)	57, 377, 476
FokI	GGATG	3 cut(s)	6, 408, 470
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	3 cut(s)	57, 377, 476
FspBI	CTAG	4 cut(s)	44, 173, 366, 681
GluI	GCNGC	3 cut(s)	57, 377, 476
HaeIII	GGCC	1 cut(s)	707
HgaI	GACGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	5 cut(s)	155, 311, 341, 544, 610
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	526, 568
HphI	GGTGA	3 cut(s)	148, 295, 683
Hpy166II	GTNNAC	2 cut(s)	286, 604
Hpy188I	TCNGA	6 cut(s)	76, 212, 292, 353, 554, 693
Hpy188III	TCNNGA	7 cut(s)	122, 173, 257, 308, 338, 442, 520
Hpy8I	GTNNAC	2 cut(s)	286, 604
HpyAV	CCTTC	2 cut(s)	71, 314
HpyCH4III	ACNGT	1 cut(s)	627
HpyCH4IV	ACGT	2 cut(s)	116, 645
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 53, 501
HpyF3I	CTNAG	3 cut(s)	276, 297, 507
HpySE526I	ACGT	2 cut(s)	116, 645
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	5 cut(s)	155, 311, 341, 544, 610
Kzo9I	GATC	2 cut(s)	167, 300
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	369, 399
LpnPI	CCDG	9 cut(s)	36, 119, 146, 229, 425, 519, 562, 589, 689
Lsp1109I	GCAGC	2 cut(s)	43, 462
LweI	GCATC	3 cut(s)	25, 457, 558
MaeI	CTAG	4 cut(s)	44, 173, 366, 681
MaeII	ACGT	2 cut(s)	116, 645
MaeIII	GTNAC	4 cut(s)	232, 239, 583, 683
MalI	GATC	2 cut(s)	169, 302
MboI	GATC	2 cut(s)	167, 300
MboII	GAAGA	7 cut(s)	121, 188, 191, 521, 535, 575, 649
MfeI	CAATTG	1 cut(s)	715
MflI	RGATCY	2 cut(s)	167, 300
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	3 cut(s)	99, 354, 715
MlyI	GAGTC	2 cut(s)	520, 562
MnlI	CCTC	6 cut(s)	237, 264, 286, 334, 449, 592
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	2 cut(s)	429, 710
MspR9I	CCNGG	2 cut(s)	134, 577
MunI	CAATTG	1 cut(s)	715
MvaI	CCWGG	2 cut(s)	134, 577
MwoI	GCNNNNNNNGC	3 cut(s)	44, 53, 501
NdeII	GATC	2 cut(s)	167, 300
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	5 cut(s)	155, 311, 341, 544, 610
NlaIV	GGNNCC	1 cut(s)	556
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	2 cut(s)	232, 683
PaeR7I	CTCGAG	1 cut(s)	591
PagI	TCATGA	2 cut(s)	307, 337
PciSI	GCTCTTC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	515
PkrI	GCNGC	3 cut(s)	58, 378, 477
PleI	GAGTC	2 cut(s)	520, 562
PpsI	GAGTC	2 cut(s)	520, 562
PpuMI	RGGWCCY	1 cut(s)	436
PshAI	GACNNNNGTC	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	129
Psp1406I	AACGTT	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	2 cut(s)	132, 575
PspEI	GGTNACC	1 cut(s)	583
PspGI	CCWGG	2 cut(s)	132, 575
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	1 cut(s)	436
PspPPI	RGGWCCY	1 cut(s)	436
PspXI	VCTCGAGB	1 cut(s)	591
PsuI	RGATCY	2 cut(s)	167, 300
RsaI	GTAC	2 cut(s)	109, 629
RsaNI	GTAC	2 cut(s)	108, 628
SacI	GAGCTC	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	429, 710
SatI	GCNGC	3 cut(s)	57, 377, 476
Sau3AI	GATC	2 cut(s)	167, 300
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	2 cut(s)	520, 562
ScrFI	CCNGG	2 cut(s)	134, 577
SduI	GDGCHC	1 cut(s)	129
SfaNI	GCATC	3 cut(s)	25, 457, 558
SfcI	CTRYAG	1 cut(s)	331
Sfr274I	CTCGAG	1 cut(s)	591
SinI	GGWCC	1 cut(s)	436
SlaI	CTCGAG	1 cut(s)	591
SmlI	CTYRAG	4 cut(s)	120, 382, 440, 591
SmoI	CTYRAG	4 cut(s)	120, 382, 440, 591
Sse9I	AATT	3 cut(s)	99, 354, 715
SsiI	CCGC	1 cut(s)	377
SspI	AATATT	1 cut(s)	515
SspMI	CTAG	4 cut(s)	44, 173, 366, 681
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	132, 575
TaaI	ACNGT	1 cut(s)	627
TaiI	ACGT	2 cut(s)	119, 648
TaqI	TCGA	3 cut(s)	451, 519, 592
TasI	AATT	3 cut(s)	99, 354, 715
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	429, 710
Tru9I	TTAA	2 cut(s)	429, 710
TseFI	GTSAC	2 cut(s)	232, 683
TseI	GCWGC	2 cut(s)	56, 475
Tsp45I	GTSAC	2 cut(s)	232, 683
TspDTI	ATGAA	8 cut(s)	264, 276, 296, 474, 557, 576, 623, 639
TspGWI	ACGGA	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	1 cut(s)	354
XbaI	TCTAGA	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	4 cut(s)	44, 173, 366, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.