RLG00000023145

Annexin repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016740
Physical Location & Seq
Forward (+)
18809694 .. 18811857
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023145

Sequence Viewer

Length: 1032 bp
ATGGCTCTTTCTCTGCTTTATATCTTTGATGAGCATGTTGATGGCTGCAATTACAGGACACCACCACAAGGCTGTAACTCTTTGATTCCTTCTGCCGCAATGCCCGATCAGGTTCCTCCTGTGGCTGAAGACTGCGAAAAGCTTCGTAAAGCAATGCAAGGATGGGGAACAGATGAGAATGCAATCATATCCATATTGGCTCACCGGAATGCAAGGCAGCGTTGTTCTATACGTCAAACTTATACGGAGAAATATGGAGAGGATTTGTTCAACGAGCTTGAAAAAGAACTTTCCGGTGATTTTCTGAGGGCAATGCTTGTATGGACGCCACATCCTGCTGAACGAGATGCAATGCTAGCCAAAGAAGCTGCTACGAATAAAAAGTCAGAAGGCTATTTTGTGATAATGGAAATTGGTTGTACAAGAACGTCTCAAGAGCTCATCCAGGTGAGACAAGACTACCATGCTCGCTACAAGAGATCTCTAGAAGAAGATGTTTCTTGTGGCACGAGTGGAGATTTCCGAAAGCTGTTAGTTCCTCTTGTGACTTGTTACAGGTATGAACCTCACGATGAAAGTGTGGATACTGAGCTGGTGAACTCGGAGGCTAAGATCCTTCATGACAAAATCTCCCACAAGGACTATAGTCATGAGGAGATTATCAGAATTCTAACTACTAGGAGCAAGCCACACTTGAGAGCAACGCTCCAAAACTATAACGACCAGTTTGGTCATCCTATTAACAAGGACCTCAAGAAGCATCGAAAGGATGAATACCTCGCTTTGCTGAGAGCCACTATAAAATGCTTGACTTGCCCTGAGAAGTATTTCGAGAAGACTCTTCGTCTGTCCATGAAAGGCCTCGGAACCAATGAACAGACTCTTACCAGGGTGGTAACCACTCGAGCCGAGGTTGACATGAAGCATATAATGGAACAGTACCAACGGAAGAACAACGTTTCATTGGATAGTGACATCAAAGGTGATACTTCTAGTGACTATCGGACGATGTTGCTGGCCTTAATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

344

Amino Acids

39.51

Weight (kDa)

6.47

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 44 - 107 1.1e-22 Annexin
Annexin PF00191 116 - 181 8.4e-14 Annexin
Annexin PF00191 202 - 263 4.8e-12 Annexin
Annexin PF00191 276 - 341 9.8e-20 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016740)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26060
malus_domestica MD05G1045300.v1.1
prunus_persica Prupe.8G062100_v2.0.a1 Prupe.8G062100_v2.0.a1
pyrus_communis pycom05g03780
rosa_chinensis RchiOBHm_Chr3g0485531
rosa_laevigata RLG00000023145
rosa_roxburghii Rroxscaffold_6G00396670
rosa_rugosa Rorug03G0219800
rosa_samantha Rh3AG268300 Rh3BG304000 Rh3CG302300 Rh3DG298900
rosa_wichuraiana Rw3G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AclI AACGTT 1 cut(s) 957
AclWI GGATC 1 cut(s) 607
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 326
AfaI GTAC 2 cut(s) 421, 941
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 271, 281
AhdI GACNNNNNGTC 1 cut(s) 843
AjnI CCWGG 2 cut(s) 444, 887
AluBI AGCT 6 cut(s) 142, 277, 368, 439, 529, 592
AluI AGCT 6 cut(s) 142, 277, 368, 439, 529, 592
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 2 cut(s) 435, 445
AlwI GGATC 1 cut(s) 607
Ama87I CYCGRG 1 cut(s) 903
AoxI GGCC 2 cut(s) 859, 1017
ApeKI GCWGC 3 cut(s) 45, 217, 368
ApoI RAATTY 1 cut(s) 666
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
Asp700I GAANNNNTTC 2 cut(s) 141, 827
AspS9I GGNCC 1 cut(s) 748
AsuHPI GGTGA 5 cut(s) 194, 308, 460, 607, 995
AsuNHI GCTAGC 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 441
BauI CACGAG 1 cut(s) 508
BbsI GAAGAC 2 cut(s) 135, 842
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 32, 229, 355
BccI CCATC 2 cut(s) 35, 156
BciT130I CCWGG 2 cut(s) 446, 889
BciVI GTATCC 1 cut(s) 577
BcoDI GTCTC 2 cut(s) 435, 445
BfaI CTAG 4 cut(s) 356, 485, 678, 993
BfmI CTRYAG 1 cut(s) 643
BfuI GTATCC 1 cut(s) 577
BglII AGATCT 1 cut(s) 479
BisI GCNGC 4 cut(s) 46, 96, 218, 369
BlsI GCNGC 4 cut(s) 47, 97, 219, 370
Bme1390I CCNGG 2 cut(s) 446, 889
Bme18I GGWCC 1 cut(s) 748
BmeRI GACNNNNNGTC 1 cut(s) 843
BmeT110I CYCGRG 1 cut(s) 903
BmgT120I GGNCC 1 cut(s) 748
BmiI GGNNCC 2 cut(s) 114, 868
BmrFI CCNGG 2 cut(s) 446, 889
BmsI GCATC 2 cut(s) 337, 769
BmtI GCTAGC 1 cut(s) 359
BoxI GACNNNNGTC 1 cut(s) 645
BpiI GAAGAC 2 cut(s) 135, 842
BplI GAGNNNNNCTC 2 cut(s) 690, 722
BpuEI CTTGAG 3 cut(s) 417, 715, 737
BsaHI GRCGYC 1 cut(s) 326
BsaJI CCNNGG 3 cut(s) 862, 888, 909
BsaWI WCCGGW 2 cut(s) 204, 293
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 724
Bse3DI GCAATG 4 cut(s) 105, 159, 318, 357
BseBI CCWGG 2 cut(s) 446, 889
BseDI CCNNGG 3 cut(s) 862, 888, 909
BseGI GGATG 5 cut(s) 167, 331, 441, 733, 775
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 4 cut(s) 105, 159, 318, 357
BseMII CTCAG 4 cut(s) 296, 579, 779, 810
BseNI ACTGG 1 cut(s) 724
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 3 cut(s) 32, 229, 355
BshFI GGCC 2 cut(s) 861, 1019
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 903
BsiSI CCGG 2 cut(s) 205, 294
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 435, 445
BsmBI CGTCTC 1 cut(s) 435
BsmI GAATGC 2 cut(s) 184, 214
BsnI GGCC 2 cut(s) 861, 1019
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 1 cut(s) 441
Bsp1407I TGTACA 1 cut(s) 419
Bsp143I GATC 3 cut(s) 106, 479, 612
BspACI CCGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 861, 1019
BspCNI CTCAG 4 cut(s) 297, 580, 780, 811
BspHI TCATGA 2 cut(s) 619, 649
BspLI GGNNCC 2 cut(s) 114, 868
BspOI GCTAGC 1 cut(s) 359
BspPI GGATC 1 cut(s) 607
BsrDI GCAATG 4 cut(s) 105, 159, 318, 357
BsrGI TGTACA 1 cut(s) 419
BsrI ACTGG 1 cut(s) 724
BssECI CCNNGG 3 cut(s) 862, 888, 909
BssMI GATC 3 cut(s) 106, 479, 612
BssNI GRCGYC 1 cut(s) 326
BssSI CACGAG 1 cut(s) 508
Bst2BI CACGAG 1 cut(s) 508
Bst2UI CCWGG 2 cut(s) 446, 889
Bst4CI ACNGT 1 cut(s) 939
Bst6I CTCTTC 1 cut(s) 846
BstACI GRCGYC 1 cut(s) 326
BstAUI TGTACA 1 cut(s) 419
BstC8I GCNNGC 4 cut(s) 357, 469, 686, 1017
BstDEI CTNAG 5 cut(s) 305, 588, 609, 788, 819
BstEII GGTNACC 1 cut(s) 895
BstF5I GGATG 5 cut(s) 167, 331, 441, 733, 775
BstKTI GATC 3 cut(s) 109, 482, 615
BstMAI GTCTC 2 cut(s) 435, 445
BstMBI GATC 3 cut(s) 106, 479, 612
BstMWI GCNNNNNNNGC 3 cut(s) 356, 365, 813
BstNI CCWGG 2 cut(s) 446, 889
BstNSI RCATGY 1 cut(s) 38
BstPAI GACNNNNGTC 1 cut(s) 645
BstPI GGTNACC 1 cut(s) 895
BstSCI CCNGG 2 cut(s) 444, 887
BstSFI CTRYAG 1 cut(s) 643
BstV1I GCAGC 3 cut(s) 32, 229, 355
BstV2I GAAGAC 2 cut(s) 135, 842
BstX2I RGATCY 2 cut(s) 479, 612
BstYI RGATCY 2 cut(s) 479, 612
BsuI GTATCC 1 cut(s) 577
BsuRI GGCC 2 cut(s) 861, 1019
BtsCI GGATG 5 cut(s) 167, 331, 441, 733, 775
Cac8I GCNNGC 4 cut(s) 357, 469, 686, 1017
CciI TCATGA 2 cut(s) 619, 649
Cfr13I GGNCC 1 cut(s) 748
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 420, 940
CviAII CATG 6 cut(s) 35, 464, 620, 650, 853, 919
CviQI GTAC 2 cut(s) 420, 940
DdeI CTNAG 5 cut(s) 305, 588, 609, 788, 819
DpnI GATC 3 cut(s) 108, 481, 614
DpnII GATC 3 cut(s) 106, 479, 612
DriI GACNNNNNGTC 1 cut(s) 843
Eam1104I CTCTTC 1 cut(s) 846
Eam1105I GACNNNNNGTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 846
Ecl136II GAGCTC 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 861
Eco24I GRGCYC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 748
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 903
Eco91I GGTNACC 1 cut(s) 895
EcoICRI GAGCTC 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 748
EcoO65I GGTNACC 1 cut(s) 895
EcoRI GAATTC 1 cut(s) 666
EcoRII CCWGG 2 cut(s) 444, 887
EcoT38I GRGCYC 1 cut(s) 441
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 6 cut(s) 38, 467, 623, 653, 856, 922
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FatI CATG 6 cut(s) 34, 463, 619, 649, 852, 918
Fnu4HI GCNGC 4 cut(s) 46, 96, 218, 369
FokI GGATG 5 cut(s) 174, 318, 428, 720, 782
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 4 cut(s) 46, 96, 218, 369
FspBI CTAG 4 cut(s) 356, 485, 678, 993
GluI GCNGC 4 cut(s) 46, 96, 218, 369
HaeIII GGCC 2 cut(s) 861, 1019
HapII CCGG 2 cut(s) 205, 294
HgaI GACGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 326
Hin1II CATG 6 cut(s) 38, 467, 623, 653, 856, 922
HincII GTYRAC 1 cut(s) 916
HindII GTYRAC 1 cut(s) 916
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 3 cut(s) 85, 838, 880
HpaII CCGG 2 cut(s) 205, 294
HphI GGTGA 5 cut(s) 194, 308, 460, 607, 995
Hpy166II GTNNAC 2 cut(s) 598, 916
Hpy188I TCNGA 7 cut(s) 306, 388, 524, 604, 665, 866, 1005
Hpy188III TCNNGA 7 cut(s) 434, 485, 569, 620, 650, 754, 832
Hpy8I GTNNAC 2 cut(s) 598, 916
HpyAV CCTTC 3 cut(s) 99, 383, 626
HpyCH4III ACNGT 1 cut(s) 939
HpyCH4IV ACGT 3 cut(s) 232, 428, 957
HpyCH4V TGCA 5 cut(s) 48, 157, 182, 212, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 365, 813
HpyF3I CTNAG 5 cut(s) 305, 588, 609, 788, 819
HpySE526I ACGT 3 cut(s) 232, 428, 957
Hsp92I GRCGYC 1 cut(s) 326
Hsp92II CATG 6 cut(s) 38, 467, 623, 653, 856, 922
Kzo9I GATC 3 cut(s) 106, 479, 612
LmnI GCTCC 2 cut(s) 681, 711
Lsp1109I GCAGC 3 cut(s) 32, 229, 355
LweI GCATC 2 cut(s) 337, 769
MaeI CTAG 4 cut(s) 356, 485, 678, 993
MaeII ACGT 3 cut(s) 232, 428, 957
MaeIII GTNAC 6 cut(s) 74, 544, 551, 895, 971, 995
MalI GATC 3 cut(s) 108, 481, 614
MboI GATC 3 cut(s) 106, 479, 612
MboII GAAGA 6 cut(s) 140, 500, 503, 833, 847, 961
MfeI CAATTG 1 cut(s) 1027
MflI RGATCY 2 cut(s) 479, 612
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 4 cut(s) 49, 411, 666, 1027
MlyI GAGTC 2 cut(s) 832, 874
MroXI GAANNNNTTC 2 cut(s) 141, 827
MseI TTAA 2 cut(s) 741, 1022
MslI CAYNNNNRTG 3 cut(s) 39, 207, 446
MspI CCGG 2 cut(s) 205, 294
MspR9I CCNGG 2 cut(s) 446, 889
MunI CAATTG 1 cut(s) 1027
Mva1269I GAATGC 2 cut(s) 184, 214
MvaI CCWGG 2 cut(s) 446, 889
MwoI GCNNNNNNNGC 3 cut(s) 356, 365, 813
NdeII GATC 3 cut(s) 106, 479, 612
NheI GCTAGC 1 cut(s) 355
NlaIII CATG 6 cut(s) 38, 467, 623, 653, 856, 922
NlaIV GGNNCC 2 cut(s) 114, 868
NmeAIII GCCGAG 1 cut(s) 934
NmuCI GTSAC 3 cut(s) 544, 971, 995
NspI RCATGY 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 903
PagI TCATGA 2 cut(s) 619, 649
PceI AGGCCT 1 cut(s) 861
PctI GAATGC 2 cut(s) 184, 214
PdmI GAANNNNTTC 2 cut(s) 141, 827
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 4 cut(s) 47, 97, 219, 370
PleI GAGTC 2 cut(s) 832, 874
PpsI GAGTC 2 cut(s) 832, 874
PpuMI RGGWCCY 1 cut(s) 748
PshAI GACNNNNGTC 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 441
Psp1406I AACGTT 1 cut(s) 957
Psp5II RGGWCCY 1 cut(s) 748
Psp6I CCWGG 2 cut(s) 444, 887
PspEI GGTNACC 1 cut(s) 895
PspGI CCWGG 2 cut(s) 444, 887
PspN4I GGNNCC 2 cut(s) 114, 868
PspPI GGNCC 1 cut(s) 748
PspPPI RGGWCCY 1 cut(s) 748
PspXI VCTCGAGB 1 cut(s) 903
PsuI RGATCY 2 cut(s) 479, 612
RsaI GTAC 2 cut(s) 421, 941
RsaNI GTAC 2 cut(s) 420, 940
RseI CAYNNNNRTG 3 cut(s) 39, 207, 446
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 741, 1022
SatI GCNGC 4 cut(s) 46, 96, 218, 369
Sau3AI GATC 3 cut(s) 106, 479, 612
Sau96I GGNCC 1 cut(s) 748
SchI GAGTC 2 cut(s) 832, 874
ScrFI CCNGG 2 cut(s) 446, 889
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 2 cut(s) 337, 769
SfcI CTRYAG 1 cut(s) 643
Sfr274I CTCGAG 1 cut(s) 903
SinI GGWCC 1 cut(s) 748
SlaI CTCGAG 1 cut(s) 903
SmiMI CAYNNNNRTG 3 cut(s) 39, 207, 446
SmlI CTYRAG 4 cut(s) 432, 694, 752, 903
SmoI CTYRAG 4 cut(s) 432, 694, 752, 903
Sse9I AATT 4 cut(s) 49, 411, 666, 1027
SseBI AGGCCT 1 cut(s) 861
SsiI CCGC 1 cut(s) 96
SspMI CTAG 4 cut(s) 356, 485, 678, 993
SstI GAGCTC 1 cut(s) 441
StuI AGGCCT 1 cut(s) 861
StyD4I CCNGG 2 cut(s) 444, 887
TaaI ACNGT 1 cut(s) 939
TaiI ACGT 3 cut(s) 235, 431, 960
TaqI TCGA 3 cut(s) 763, 831, 904
TasI AATT 4 cut(s) 49, 411, 666, 1027
TatI WGTACW 1 cut(s) 419
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 741, 1022
Tru9I TTAA 2 cut(s) 741, 1022
TseFI GTSAC 3 cut(s) 544, 971, 995
TseI GCWGC 3 cut(s) 45, 217, 368
Tsp45I GTSAC 3 cut(s) 544, 971, 995
TspDTI ATGAA 8 cut(s) 576, 588, 608, 786, 869, 888, 935, 951
TspGWI ACGGA 2 cut(s) 260, 961
VpaK11BI GGWCC 1 cut(s) 748
XapI RAATTY 1 cut(s) 666
XbaI TCTAGA 1 cut(s) 484
XceI RCATGY 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 903
XmnI GAANNNNTTC 2 cut(s) 141, 827
XspI CTAG 4 cut(s) 356, 485, 678, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.