Rh3DG298900

Annexin repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016740
Physical Location & Seq
Reverse (-)
31384600 .. 31386395
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG298900.1

Sequence Viewer

Length: 948 bp
ATGGCTACATTTTCAGTGCCCGATCATGTTCCTCCAGTGGCTGAAGACTGTGAAAAGCTTCGTAAAGCAATGCAAGGATGGGGAACAGATGAGAACGCAATCACATCCATATTGGCTCACCGGAATGCAAGGCAGCGTTGTTCTATACGTCAAACTTATACGGAGAAATATGGAGAGGATTTGTTCAACGAGCTTGAAAAAGAACTTTCCGGTGATTTTCTGAGGGCAATGCTTGTATGGACGCCACATCCTGCTGAACGAGATGCAATGCTAGCCAAAGAAGCTGCTACGAATAAAAAGTCAGAAGGCTATTTTGTGATAATGGAAATTGGTTGTACAAGAACGTCTCAAGAGCTCTTCCAGGTGAGACAAGACTACCATGCTCGCTACAAGAGATCTCTAGAAGAAGATGTTTCTTGTGGCACGAGTGGAGATTTCCGAAAGCTGTTAGTTCCTCTTGTGACTTGTTACAGGTATGAACCTCAGGATGAAAGTGTGGATACTGAGTTGGTGAACTCGGAGGCTAAGATCCTTCATGACAAAATCTCCCACAAGGACTATAGTCATGAGGAGATTATCAGAATTCTAACTACTAGGAGCAAGCCGCACTTGAGAGCAACGCTCCAAAACTATAACGACCAGTTTGGTCATCCTATTAACAAGGACCTCAAGAAGCATCGAAAGGATGAATACCTTGCTTTGCTGAGAGCCACTATAAAATGCTTGACTTGCCCTGAGAAATATTTCGAGAAGACTCTTCGTCTGTCCATGAAAGGCATCGGAACCAATGAAGAGAATCTTACCAGGGTGGTAACCACTCGAGCCGAGGTTGACATGAAGCATATAATGGAACAGTACCAACGGAAGAACAACGTTTCATTGGATAATGACATCAAAGGTGATACTTCTAGTGACTATCGGATGATGTTGCTGGCCTTAATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

315

Amino Acids

36.53

Weight (kDa)

6.61

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 16 - 79 5.6e-22 Annexin
Annexin PF00191 88 - 153 1e-13 Annexin
Annexin PF00191 174 - 235 4.2e-12 Annexin
Annexin PF00191 248 - 313 2.1e-18 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016740)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26060
malus_domestica MD05G1045300.v1.1
prunus_persica Prupe.8G062100_v2.0.a1 Prupe.8G062100_v2.0.a1
pyrus_communis pycom05g03780
rosa_chinensis RchiOBHm_Chr3g0485531
rosa_laevigata RLG00000023145
rosa_roxburghii Rroxscaffold_6G00396670
rosa_rugosa Rorug03G0219800
rosa_samantha Rh3AG268300 Rh3BG304000 Rh3CG302300 Rh3DG298900
rosa_wichuraiana Rw3G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 605
AclI AACGTT 1 cut(s) 873
AclWI GGATC 1 cut(s) 523
AcsI RAATTY 1 cut(s) 582
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 2 cut(s) 337, 857
AgsI TTSAA 2 cut(s) 187, 197
AhdI GACNNNNNGTC 1 cut(s) 759
AjnI CCWGG 2 cut(s) 360, 803
AluBI AGCT 5 cut(s) 58, 193, 284, 355, 445
AluI AGCT 5 cut(s) 58, 193, 284, 355, 445
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 351, 361
AlwI GGATC 1 cut(s) 523
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 819
AoxI GGCC 1 cut(s) 933
ApeKI GCWGC 2 cut(s) 133, 284
ApoI RAATTY 1 cut(s) 582
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp700I GAANNNNTTC 2 cut(s) 57, 743
AspS9I GGNCC 1 cut(s) 664
AsuHPI GGTGA 5 cut(s) 110, 224, 376, 523, 911
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 819
AvaII GGWCC 1 cut(s) 664
AxyI CCTNAGG 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 357
BauI CACGAG 1 cut(s) 424
BbsI GAAGAC 2 cut(s) 51, 758
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 145, 271
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 362, 805
BciVI GTATCC 1 cut(s) 493
BcoDI GTCTC 2 cut(s) 351, 361
BfaI CTAG 4 cut(s) 272, 401, 594, 909
BfmI CTRYAG 1 cut(s) 559
BfuI GTATCC 1 cut(s) 493
BglII AGATCT 1 cut(s) 395
BisI GCNGC 3 cut(s) 134, 285, 605
BlsI GCNGC 3 cut(s) 135, 286, 606
Bme1390I CCNGG 2 cut(s) 362, 805
Bme18I GGWCC 1 cut(s) 664
BmeRI GACNNNNNGTC 1 cut(s) 759
BmeT110I CYCGRG 1 cut(s) 819
BmgT120I GGNCC 1 cut(s) 664
BmiI GGNNCC 1 cut(s) 784
BmrFI CCNGG 2 cut(s) 362, 805
BmsI GCATC 3 cut(s) 253, 685, 786
BmtI GCTAGC 1 cut(s) 275
BoxI GACNNNNGTC 1 cut(s) 561
BpiI GAAGAC 2 cut(s) 51, 758
BplI GAGNNNNNCTC 2 cut(s) 606, 638
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 3 cut(s) 333, 631, 653
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 804, 825
BsaWI WCCGGW 2 cut(s) 120, 209
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bse1I ACTGG 2 cut(s) 35, 640
Bse21I CCTNAGG 1 cut(s) 483
Bse3DI GCAATG 3 cut(s) 75, 234, 273
BseBI CCWGG 2 cut(s) 362, 805
BseDI CCNNGG 2 cut(s) 804, 825
BseGI GGATG 7 cut(s) 83, 104, 247, 493, 649, 691, 927
BseMI GCAATG 3 cut(s) 75, 234, 273
BseMII CTCAG 5 cut(s) 212, 495, 497, 695, 726
BseNI ACTGG 2 cut(s) 35, 640
BseRI GAGGAG 1 cut(s) 584
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 2 cut(s) 145, 271
BshFI GGCC 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 819
BsiSI CCGG 2 cut(s) 121, 210
BsmAI GTCTC 2 cut(s) 351, 361
BsmBI CGTCTC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 1 cut(s) 935
BsoBI CYCGRG 1 cut(s) 819
Bsp1286I GDGCHC 2 cut(s) 21, 357
Bsp1407I TGTACA 1 cut(s) 335
Bsp143I GATC 3 cut(s) 22, 395, 528
BspACI CCGC 1 cut(s) 605
BspANI GGCC 1 cut(s) 935
BspCNI CTCAG 5 cut(s) 213, 496, 496, 696, 727
BspHI TCATGA 2 cut(s) 535, 565
BspLI GGNNCC 1 cut(s) 784
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 1 cut(s) 523
BspQI GCTCTTC 1 cut(s) 362
BsrDI GCAATG 3 cut(s) 75, 234, 273
BsrGI TGTACA 1 cut(s) 335
BsrI ACTGG 2 cut(s) 35, 640
BssECI CCNNGG 2 cut(s) 804, 825
BssMI GATC 3 cut(s) 22, 395, 528
BssNI GRCGYC 1 cut(s) 242
BssSI CACGAG 1 cut(s) 424
Bst2BI CACGAG 1 cut(s) 424
Bst2UI CCWGG 2 cut(s) 362, 805
Bst4CI ACNGT 2 cut(s) 50, 855
Bst6I CTCTTC 3 cut(s) 362, 762, 786
BstACI GRCGYC 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 335
BstC8I GCNNGC 4 cut(s) 273, 385, 602, 933
BstDEI CTNAG 6 cut(s) 221, 483, 504, 525, 704, 735
BstEII GGTNACC 1 cut(s) 811
BstF5I GGATG 7 cut(s) 83, 104, 247, 493, 649, 691, 927
BstKTI GATC 3 cut(s) 25, 398, 531
BstMAI GTCTC 2 cut(s) 351, 361
BstMBI GATC 3 cut(s) 22, 395, 528
BstMWI GCNNNNNNNGC 3 cut(s) 272, 281, 729
BstNI CCWGG 2 cut(s) 362, 805
BstPAI GACNNNNGTC 1 cut(s) 561
BstPI GGTNACC 1 cut(s) 811
BstSCI CCNGG 2 cut(s) 360, 803
BstSFI CTRYAG 1 cut(s) 559
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 145, 271
BstV2I GAAGAC 2 cut(s) 51, 758
BstX2I RGATCY 2 cut(s) 395, 528
BstYI RGATCY 2 cut(s) 395, 528
Bsu36I CCTNAGG 1 cut(s) 483
BsuI GTATCC 1 cut(s) 493
BsuRI GGCC 1 cut(s) 935
BtsCI GGATG 7 cut(s) 83, 104, 247, 493, 649, 691, 927
BtsIMutI CAGTG 2 cut(s) 21, 42
Cac8I GCNNGC 4 cut(s) 273, 385, 602, 933
CaiI CAGNNNCTG 1 cut(s) 41
CciI TCATGA 2 cut(s) 535, 565
Cfr13I GGNCC 1 cut(s) 664
CseI GACGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 336, 856
CviAII CATG 6 cut(s) 26, 380, 536, 566, 769, 835
CviQI GTAC 2 cut(s) 336, 856
DdeI CTNAG 6 cut(s) 221, 483, 504, 525, 704, 735
DpnI GATC 3 cut(s) 24, 397, 530
DpnII GATC 3 cut(s) 22, 395, 528
DriI GACNNNNNGTC 1 cut(s) 759
Eam1104I CTCTTC 3 cut(s) 362, 762, 786
Eam1105I GACNNNNNGTC 1 cut(s) 759
EarI CTCTTC 3 cut(s) 362, 762, 786
Ecl136II GAGCTC 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 664
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 63
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 819
Eco91I GGTNACC 1 cut(s) 811
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 664
EcoO65I GGTNACC 1 cut(s) 811
EcoRI GAATTC 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 360, 803
EcoT38I GRGCYC 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 6 cut(s) 29, 383, 539, 569, 772, 838
FalI AAGNNNNNCTT 4 cut(s) 593, 625, 783, 815
FatI CATG 6 cut(s) 25, 379, 535, 565, 768, 834
Fnu4HI GCNGC 3 cut(s) 134, 285, 605
FokI GGATG 7 cut(s) 90, 91, 234, 500, 636, 698, 934
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 134, 285, 605
FspBI CTAG 4 cut(s) 272, 401, 594, 909
GluI GCNGC 3 cut(s) 134, 285, 605
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 1 cut(s) 935
HapII CCGG 2 cut(s) 121, 210
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 6 cut(s) 29, 383, 539, 569, 772, 838
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 754, 796
HpaII CCGG 2 cut(s) 121, 210
HphI GGTGA 5 cut(s) 110, 224, 376, 523, 911
Hpy166II GTNNAC 2 cut(s) 514, 832
Hpy188I TCNGA 7 cut(s) 222, 304, 440, 520, 581, 782, 921
Hpy188III TCNNGA 7 cut(s) 350, 401, 485, 536, 566, 670, 748
Hpy8I GTNNAC 2 cut(s) 514, 832
HpyAV CCTTC 2 cut(s) 299, 542
HpyCH4III ACNGT 2 cut(s) 50, 855
HpyCH4IV ACGT 3 cut(s) 148, 344, 873
HpyCH4V TGCA 3 cut(s) 73, 128, 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 281, 729
HpyF3I CTNAG 6 cut(s) 221, 483, 504, 525, 704, 735
HpySE526I ACGT 3 cut(s) 148, 344, 873
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 6 cut(s) 29, 383, 539, 569, 772, 838
Kzo9I GATC 3 cut(s) 22, 395, 528
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 2 cut(s) 597, 627
Lsp1109I GCAGC 2 cut(s) 145, 271
LweI GCATC 3 cut(s) 253, 685, 786
MaeI CTAG 4 cut(s) 272, 401, 594, 909
MaeII ACGT 3 cut(s) 148, 344, 873
MaeIII GTNAC 4 cut(s) 460, 467, 811, 911
MalI GATC 3 cut(s) 24, 397, 530
MboI GATC 3 cut(s) 22, 395, 528
MboII GAAGA 8 cut(s) 56, 349, 416, 419, 749, 763, 803, 877
MfeI CAATTG 1 cut(s) 943
MflI RGATCY 2 cut(s) 395, 528
MhlI GDGCHC 2 cut(s) 21, 357
MluCI AATT 3 cut(s) 327, 582, 943
MlyI GAGTC 1 cut(s) 748
MnlI CCTC 9 cut(s) 42, 169, 216, 465, 492, 514, 562, 677, 820
MroXI GAANNNNTTC 2 cut(s) 57, 743
MseI TTAA 2 cut(s) 657, 938
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 2 cut(s) 121, 210
MspR9I CCNGG 2 cut(s) 362, 805
MunI CAATTG 1 cut(s) 943
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 2 cut(s) 362, 805
MwoI GCNNNNNNNGC 3 cut(s) 272, 281, 729
NdeII GATC 3 cut(s) 22, 395, 528
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 6 cut(s) 29, 383, 539, 569, 772, 838
NlaIV GGNNCC 1 cut(s) 784
NmeAIII GCCGAG 1 cut(s) 850
NmuCI GTSAC 2 cut(s) 460, 911
PaeR7I CTCGAG 1 cut(s) 819
PagI TCATGA 2 cut(s) 535, 565
PciSI GCTCTTC 1 cut(s) 362
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 2 cut(s) 57, 743
PfeI GAWTC 1 cut(s) 796
PkrI GCNGC 3 cut(s) 135, 286, 606
PleI GAGTC 1 cut(s) 748
PpsI GAGTC 1 cut(s) 748
PpuMI RGGWCCY 1 cut(s) 664
PshAI GACNNNNGTC 1 cut(s) 561
Psp124BI GAGCTC 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 873
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 2 cut(s) 360, 803
PspEI GGTNACC 1 cut(s) 811
PspGI CCWGG 2 cut(s) 360, 803
PspN4I GGNNCC 1 cut(s) 784
PspPI GGNCC 1 cut(s) 664
PspPPI RGGWCCY 1 cut(s) 664
PspXI VCTCGAGB 1 cut(s) 819
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 2 cut(s) 395, 528
RsaI GTAC 2 cut(s) 337, 857
RsaNI GTAC 2 cut(s) 336, 856
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 657, 938
SatI GCNGC 3 cut(s) 134, 285, 605
Sau3AI GATC 3 cut(s) 22, 395, 528
Sau96I GGNCC 1 cut(s) 664
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 2 cut(s) 362, 805
SduI GDGCHC 2 cut(s) 21, 357
SfaNI GCATC 3 cut(s) 253, 685, 786
SfcI CTRYAG 1 cut(s) 559
Sfr274I CTCGAG 1 cut(s) 819
SinI GGWCC 1 cut(s) 664
SlaI CTCGAG 1 cut(s) 819
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 4 cut(s) 348, 610, 668, 819
SmoI CTYRAG 4 cut(s) 348, 610, 668, 819
Sse9I AATT 3 cut(s) 327, 582, 943
SsiI CCGC 1 cut(s) 605
SspI AATATT 1 cut(s) 743
SspMI CTAG 4 cut(s) 272, 401, 594, 909
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 2 cut(s) 360, 803
TaaI ACNGT 2 cut(s) 50, 855
TaiI ACGT 3 cut(s) 151, 347, 876
TaqI TCGA 3 cut(s) 679, 747, 820
TasI AATT 3 cut(s) 327, 582, 943
TatI WGTACW 1 cut(s) 335
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 1 cut(s) 796
Tru1I TTAA 2 cut(s) 657, 938
Tru9I TTAA 2 cut(s) 657, 938
TscAI CASTG 2 cut(s) 21, 42
TseFI GTSAC 2 cut(s) 460, 911
TseI GCWGC 2 cut(s) 133, 284
Tsp45I GTSAC 2 cut(s) 460, 911
TspDTI ATGAA 8 cut(s) 492, 504, 524, 702, 785, 804, 851, 867
TspGWI ACGGA 2 cut(s) 176, 877
TspRI CASTG 2 cut(s) 21, 42
VpaK11BI GGWCC 1 cut(s) 664
XapI RAATTY 1 cut(s) 582
XbaI TCTAGA 1 cut(s) 400
XhoI CTCGAG 1 cut(s) 819
XmnI GAANNNNTTC 2 cut(s) 57, 743
XspI CTAG 4 cut(s) 272, 401, 594, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.