Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013384

Physical Location & Seq

Genomic Coordinates Forward (+)

21410295 .. 21412921

Gene Structure 2627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGCTTGTGAAACCCATGACCAATTTCGGCAATGTTACAACTCCCAAGTTTGGGAATACCAGAAGCAGCAGCAGTGGCAAGTGGAGCACCATGATCAGAATGTCGTCGTCCTCCTCCACCACCAAAAAGGGCAAGGGCGCTCCTAAGAAAGCCATCAAGGAGACGCTGTTGGCGCCACGGTTCTACACCACCGACTTTGACGAGATGGAGACCCTTTTCAACACCGAAATCAACAACAATTTGAACCAGGCCGAGTTTGAGGCTCTGCTTCAGGAATTCAAGACCGACTACAACCAGACCCATTTTGTGAGGAACAAGGAGTTCAAGGAAGCTGCTGATAACCTCCAGGGACCCCTCAGACAGATCTTTGTCGAGTTCTTGGAGAGGTCTTGCACCGCTGAGTTCTCTGGCTTCCTTCTTTACAAAGAGCTTGGAAGAAGGCTCAAGAAAACCAATCCAGTTGTTGCTGAGATTTTCTCTCTCATGTCCAGGGATGAAGCCAGGCATGCTGGTTTCTTGAACAAAGGCCTATCTGATTTCAATTTGGCATTGGACTTGGGGTTTCTCACCAAGGCCCGAAAATACACCTTTTTCAAACCAAAATTCATCTTCTATGCTACTTATTTGTCTGAGAAAATTGGATACTGGAGGTACATTACCATATACAGGCATCTCAAGGCAAATCCCGAGTACCAGTGCTATCCCATTTTCAAGTATTTTGAGAATTGGTGCCAGGACGAGAACAGACACGGTGACTTCTTTTCCGCACTCATGAAGGCACAACCCCAGTTCCTAAATGACTGGAAGGCAAAGTTGTGGTGTCGATTCTTCTGCTTATCGGTATATGTGACAATGTACCTAAATGATTGCCAACGGACAGCTTTCTACGAAGGCATTGGGCTCAATACAAAAGAATTTGATATGCATGTCATCATTGAGATTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004497 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016043 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019222 GO:0019438 GO:0019866 GO:0031090 GO:0031323 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042170 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048529 GO:0050789 GO:0050794 GO:0051171 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Rubrerythrin

Protein Analysis

317

Amino Acids

37.07

Weight (kDa)

9.02

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rubrerythrin	PF02915	126 - 259	2.2e-43	Rubrerythrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56940 AT3G56940
fragaria_vesca	FvH4_1g28960 FvH4_1g28960
malus_domestica	MD00G1107700.v1.1
prunus_persica	Prupe.7G022500_v2.0.a1
pyrus_communis	pycom12g09220
rosa_chinensis	RchiOBHm_Chr3g0494361
rosa_laevigata	RLG00000022676
rosa_multiflora	Rmu_sc0031350.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391150
rosa_rugosa	Rorug03G0264700
rosa_samantha	Rh3AG315100 Rh3AG315200 Rh3BG350400 Rh3CG347100 Rh3DG349700
rosa_wichuraiana	Rw3G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	175, 732
AciI	CCGC	2 cut(s)	399, 768
AcsI	RAATTY	3 cut(s)	278, 605, 917
AcuI	CTGAAG	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	3 cut(s)	656, 695, 860
AfiI	CCNNNNNNNGG	3 cut(s)	53, 54, 669
AgsI	TTSAA	8 cut(s)	223, 247, 283, 328, 523, 544, 598, 715
AjnI	CCWGG	5 cut(s)	249, 348, 491, 503, 735
AluBI	AGCT	3 cut(s)	335, 433, 884
AluI	AGCT	3 cut(s)	335, 433, 884
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	158, 206
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	3 cut(s)	252, 529, 576
ApeKI	GCWGC	3 cut(s)	69, 72, 335
ApoI	RAATTY	3 cut(s)	278, 605, 917
AspLEI	GCGC	3 cut(s)	7, 143, 178
AspS9I	GGNCC	2 cut(s)	353, 577
AsuHPI	GGTGA	2 cut(s)	562, 767
AvaI	CYCGRG	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	353
BanI	GGYRCC	2 cut(s)	175, 732
BanII	GRGCYC	1 cut(s)	906
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	81, 84, 322
BccI	CCATC	2 cut(s)	164, 202
BcgI	CGANNNNNNTGC	2 cut(s)	816, 850
BciT130I	CCWGG	5 cut(s)	251, 350, 493, 505, 737
BciVI	GTATCC	1 cut(s)	638
BclI	TGATCA	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	158, 206
BfoI	RGCGCY	3 cut(s)	8, 144, 179
BfuI	GTATCC	1 cut(s)	638
BglII	AGATCT	1 cut(s)	366
BisI	GCNGC	3 cut(s)	70, 73, 336
BlsI	GCNGC	3 cut(s)	71, 74, 337
Bme1390I	CCNGG	5 cut(s)	251, 350, 493, 505, 737
Bme18I	GGWCC	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	353, 577
BmiI	GGNNCC	4 cut(s)	177, 354, 355, 734
BmrFI	CCNGG	5 cut(s)	251, 350, 493, 505, 737
BmrI	ACTGGG	1 cut(s)	784
BmsI	GCATC	1 cut(s)	682
BmuI	ACTGGG	1 cut(s)	784
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BpmI	CTGGAG	2 cut(s)	332, 670
BpuEI	CTTGAG	2 cut(s)	431, 662
BsaHI	GRCGYC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	4 cut(s)	179, 349, 492, 573
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 54, 669
Bse1I	ACTGG	5 cut(s)	461, 653, 697, 790, 809
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	5 cut(s)	251, 350, 493, 505, 737
BseDI	CCNNGG	4 cut(s)	179, 349, 492, 573
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	3 cut(s)	53, 54, 669
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	4 cut(s)	373, 393, 462, 624
BseNI	ACTGG	5 cut(s)	461, 653, 697, 790, 809
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	81, 84, 322
BshFI	GGCC	3 cut(s)	254, 531, 578
BshNI	GGYRCC	2 cut(s)	175, 732
BsiHKAI	GWGCWC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	689
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	3 cut(s)	53, 54, 669
BsmAI	GTCTC	2 cut(s)	158, 206
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	3 cut(s)	254, 531, 578
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	2 cut(s)	92, 906
Bsp143I	GATC	2 cut(s)	96, 366
BspACI	CCGC	2 cut(s)	399, 768
BspANI	GGCC	3 cut(s)	254, 531, 578
BspCNI	CTCAG	4 cut(s)	372, 394, 463, 625
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	4 cut(s)	177, 354, 355, 734
BspT107I	GGYRCC	2 cut(s)	175, 732
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	5 cut(s)	461, 653, 697, 790, 809
BssECI	CCNNGG	4 cut(s)	179, 349, 492, 573
BssMI	GATC	2 cut(s)	96, 366
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	5 cut(s)	251, 350, 493, 505, 737
Bst4CI	ACNGT	2 cut(s)	183, 755
BstACI	GRCGYC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	5 cut(s)	147, 359, 402, 471, 633
BstDSI	CCRYGG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	502
BstH2I	RGCGCY	3 cut(s)	8, 144, 179
BstHHI	GCGC	3 cut(s)	7, 143, 178
BstKTI	GATC	2 cut(s)	99, 369
BstMAI	GTCTC	2 cut(s)	158, 206
BstMBI	GATC	2 cut(s)	96, 366
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 87, 175, 509
BstNI	CCWGG	5 cut(s)	251, 350, 493, 505, 737
BstNSI	RCATGY	2 cut(s)	512, 932
BstSCI	CCNGG	5 cut(s)	249, 348, 491, 503, 735
BstV1I	GCAGC	3 cut(s)	81, 84, 322
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	638
BsuRI	GGCC	3 cut(s)	254, 531, 578
BtgI	CCRYGG	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	502
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 704
Cac8I	GCNNGC	1 cut(s)	510
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	3 cut(s)	7, 143, 178
Cfr13I	GGNCC	2 cut(s)	353, 577
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	655, 694, 859
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	6 cut(s)	19, 94, 487, 509, 775, 929
CviQI	GTAC	3 cut(s)	655, 694, 859
DdeI	CTNAG	5 cut(s)	147, 359, 402, 471, 633
DinI	GGCGCC	1 cut(s)	177
DpnI	GATC	2 cut(s)	98, 368
DpnII	GATC	2 cut(s)	96, 366
Eco130I	CCWWGG	1 cut(s)	573
Eco147I	AGGCCT	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	906
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	689
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	5 cut(s)	249, 348, 491, 503, 735
EcoT14I	CCWWGG	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	930
EcoT38I	GRGCYC	1 cut(s)	906
EgeI	GGCGCC	1 cut(s)	177
EheI	GGCGCC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	573
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	6 cut(s)	22, 97, 490, 512, 778, 932
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	6 cut(s)	18, 93, 486, 508, 774, 928
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	70, 73, 336
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	3 cut(s)	70, 73, 336
GlaI	GCGC	3 cut(s)	6, 142, 177
GluI	GCNGC	3 cut(s)	70, 73, 336
GsuI	CTGGAG	2 cut(s)	332, 670
HaeII	RGCGCY	3 cut(s)	8, 144, 179
HaeIII	GGCC	3 cut(s)	254, 531, 578
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	3 cut(s)	7, 143, 178
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	6 cut(s)	22, 97, 490, 512, 778, 932
Hin6I	GCGC	3 cut(s)	5, 141, 176
HinP1I	GCGC	3 cut(s)	5, 141, 176
HinfI	GANTC	1 cut(s)	828
HphI	GGTGA	2 cut(s)	562, 767
Hpy188I	TCNGA	4 cut(s)	101, 362, 538, 634
Hpy188III	TCNNGA	6 cut(s)	275, 283, 448, 520, 689, 775
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	5 cut(s)	428, 435, 772, 802, 887
HpyCH4III	ACNGT	2 cut(s)	183, 755
HpyCH4V	TGCA	2 cut(s)	396, 928
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 87, 175, 509
HpyF3I	CTNAG	5 cut(s)	147, 359, 402, 471, 633
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	6 cut(s)	22, 97, 490, 512, 778, 932
HspAI	GCGC	3 cut(s)	5, 141, 176
KasI	GGCGCC	1 cut(s)	175
KflI	GGGWCCC	1 cut(s)	353
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	96, 366
LmnI	GCTCC	2 cut(s)	87, 148
Lsp1109I	GCAGC	3 cut(s)	81, 84, 322
LweI	GCATC	1 cut(s)	682
MaeIII	GTNAC	3 cut(s)	37, 755, 850
MalI	GATC	2 cut(s)	98, 368
MboI	GATC	2 cut(s)	96, 366
MboII	GAAGA	3 cut(s)	450, 604, 823
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	2 cut(s)	92, 906
MluCI	AATT	8 cut(s)	25, 241, 278, 544, 605, 639, 727, 917
Mly113I	GGCGCC	1 cut(s)	176
MnlI	CCTC	8 cut(s)	124, 127, 256, 306, 356, 368, 381, 645
Mph1103I	ATGCAT	1 cut(s)	930
MspA1I	CMGCKG	1 cut(s)	401
MspR9I	CCNGG	5 cut(s)	251, 350, 493, 505, 737
MvaI	CCWGG	5 cut(s)	251, 350, 493, 505, 737
MwoI	GCNNNNNNNGC	4 cut(s)	78, 87, 175, 509
NarI	GGCGCC	1 cut(s)	176
NdeII	GATC	2 cut(s)	96, 366
NlaIII	CATG	6 cut(s)	22, 97, 490, 512, 778, 932
NlaIV	GGNNCC	4 cut(s)	177, 354, 355, 734
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	2 cut(s)	755, 850
NsiI	ATGCAT	1 cut(s)	930
NspI	RCATGY	2 cut(s)	512, 932
PaeI	GCATGC	1 cut(s)	512
PagI	TCATGA	1 cut(s)	774
PceI	AGGCCT	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	828
PkrI	GCNGC	3 cut(s)	71, 74, 337
PluTI	GGCGCC	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	5 cut(s)	249, 348, 491, 503, 735
PspGI	CCWGG	5 cut(s)	249, 348, 491, 503, 735
PspN4I	GGNNCC	4 cut(s)	177, 354, 355, 734
PspPI	GGNCC	2 cut(s)	353, 577
PspPPI	RGGWCCY	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	366
RsaI	GTAC	3 cut(s)	656, 695, 860
RsaNI	GTAC	3 cut(s)	655, 694, 859
SatI	GCNGC	3 cut(s)	70, 73, 336
Sau3AI	GATC	2 cut(s)	96, 366
Sau96I	GGNCC	2 cut(s)	353, 577
ScrFI	CCNGG	5 cut(s)	251, 350, 493, 505, 737
SduI	GDGCHC	2 cut(s)	92, 906
SetI	ASST	8 cut(s)	337, 348, 392, 435, 593, 656, 864, 886
SfaNI	GCATC	1 cut(s)	682
SfoI	GGCGCC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	353
SmlI	CTYRAG	2 cut(s)	446, 677
SmoI	CTYRAG	2 cut(s)	446, 677
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	8 cut(s)	25, 241, 278, 544, 605, 639, 727, 917
SseBI	AGGCCT	1 cut(s)	531
SsiI	CCGC	2 cut(s)	399, 768
SspDI	GGCGCC	1 cut(s)	175
StuI	AGGCCT	1 cut(s)	531
StyD4I	CCNGG	5 cut(s)	249, 348, 491, 503, 735
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	183, 755
TaqI	TCGA	2 cut(s)	375, 826
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	8 cut(s)	25, 241, 278, 544, 605, 639, 727, 917
TfiI	GAWTC	1 cut(s)	828
TscAI	CASTG	2 cut(s)	82, 704
TseFI	GTSAC	2 cut(s)	755, 850
TseI	GCWGC	3 cut(s)	69, 72, 335
Tsp45I	GTSAC	2 cut(s)	755, 850
TspDTI	ATGAA	3 cut(s)	513, 598, 791
TspGWI	ACGGA	1 cut(s)	892
TspRI	CASTG	2 cut(s)	82, 704
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	3 cut(s)	278, 605, 917
XceI	RCATGY	2 cut(s)	512, 932
Zsp2I	ATGCAT	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.