Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013384

Physical Location & Seq

Genomic Coordinates Forward (+)

25720075 .. 25721012

Gene Structure 938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0264700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGATGCTTTGACTACTTTCATAGATCAAATGAGAAGTGCAGTGGTGGATTGGGCCAGCCGCTTCAATATTATTCAGGGTGTGGCTAGAGGAGGCTATATGTCTCCAGAGTATGCCATGGGAGGAATATTTTCAGAAAAATCAGATGTCTATAGCTTTGGGGTCTTGGTATTGGAAATCATTAGCAGCAAGAAGAATAGCCACTTCTATTACCATGAACAACAGCTCGGCTTTCTAGCCTATGATGATGCTGCAGATAGGCCAACCATGCCGGAAGTTGCTTTCATGCTAAGCAGTGAGACAGATGCTCCACAACCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004497 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016043 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019222 GO:0019438 GO:0019866 GO:0031090 GO:0031323 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042170 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048529 GO:0050789 GO:0050794 GO:0051171 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Rubrerythrin

Protein Analysis

107

Amino Acids

11.99

Weight (kDa)

4.64

Isoelectric Point (pI)

63.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	33 - 75	6.7e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56940 AT3G56940
fragaria_vesca	FvH4_1g28960 FvH4_1g28960
malus_domestica	MD00G1107700.v1.1
prunus_persica	Prupe.7G022500_v2.0.a1
pyrus_communis	pycom12g09220
rosa_chinensis	RchiOBHm_Chr3g0494361
rosa_laevigata	RLG00000022676
rosa_multiflora	Rmu_sc0031350.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391150
rosa_rugosa	Rorug03G0264700
rosa_samantha	Rh3AG315100 Rh3AG315200 Rh3BG350400 Rh3CG347100 Rh3DG349700
rosa_wichuraiana	Rw3G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	2 cut(s)	156, 226
AluI	AGCT	2 cut(s)	156, 226
Alw26I	GTCTC	2 cut(s)	108, 293
AoxI	GGCC	2 cut(s)	54, 260
ApeKI	GCWGC	2 cut(s)	186, 251
Asp700I	GAANNNNTTC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	198, 238
BcoDI	GTCTC	2 cut(s)	108, 293
BfaI	CTAG	2 cut(s)	87, 236
BfmI	CTRYAG	2 cut(s)	151, 252
BisI	GCNGC	3 cut(s)	61, 187, 252
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	3 cut(s)	62, 188, 253
BmgT120I	GGNCC	1 cut(s)	54
BmsI	GCATC	2 cut(s)	238, 295
BpmI	CTGGAG	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	10
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	198, 238
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	56, 262
BsiSI	CCGG	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	108, 293
BsnI	GGCC	2 cut(s)	56, 262
Bsp143I	GATC	1 cut(s)	25
Bsp1720I	GCTNAGC	1 cut(s)	290
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	56, 262
BspMAI	CTGCAG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	290, 318
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	108, 293
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstSFI	CTRYAG	2 cut(s)	151, 252
BstV1I	GCAGC	2 cut(s)	198, 238
BsuRI	GGCC	2 cut(s)	56, 262
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	2 cut(s)	48, 301
BtsIMutI	CAGTG	2 cut(s)	48, 301
Cac8I	GCNNGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	54
CviAII	CATG	4 cut(s)	118, 215, 268, 286
DdeI	CTNAG	2 cut(s)	290, 318
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	4 cut(s)	121, 218, 271, 289
FatI	CATG	4 cut(s)	117, 214, 267, 285
Fnu4HI	GCNGC	3 cut(s)	61, 187, 252
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	61, 187, 252
FspBI	CTAG	2 cut(s)	87, 236
GluI	GCNGC	3 cut(s)	61, 187, 252
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	56, 262
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	4 cut(s)	121, 218, 271, 289
HpaII	CCGG	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	136, 145
Hpy188III	TCNNGA	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	41, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	2 cut(s)	290, 318
Hsp92II	CATG	4 cut(s)	121, 218, 271, 289
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	4 cut(s)	62, 70, 120, 285
Lsp1109I	GCAGC	2 cut(s)	198, 238
LweI	GCATC	2 cut(s)	238, 295
MaeI	CTAG	2 cut(s)	87, 236
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	205
MnlI	CCTC	3 cut(s)	83, 86, 116
MroXI	GAANNNNTTC	1 cut(s)	130
MspI	CCGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	4 cut(s)	121, 218, 271, 289
NmeAIII	GCCGAG	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	62, 188, 253
PspPI	GGNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	256
SatI	GCNGC	3 cut(s)	61, 187, 252
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	54
SetI	ASST	3 cut(s)	158, 228, 319
SfaNI	GCATC	2 cut(s)	238, 295
SfcI	CTRYAG	2 cut(s)	151, 252
SsiI	CCGC	1 cut(s)	61
SspI	AATATT	2 cut(s)	70, 129
SspMI	CTAG	2 cut(s)	87, 236
StyI	CCWWGG	1 cut(s)	117
TauI	GCSGC	1 cut(s)	63
TscAI	CASTG	2 cut(s)	48, 301
TseI	GCWGC	2 cut(s)	186, 251
TspDTI	ATGAA	3 cut(s)	10, 231, 274
TspRI	CASTG	2 cut(s)	48, 301
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	2 cut(s)	87, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.