Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013384

Physical Location & Seq

Genomic Coordinates Forward (+)

3535096 .. 3537773

Gene Structure 2678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G022500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGCAGCAGAGATGGCTCTTGTAAAGCCCAAGTTTGCTCCAAAAATGGCAGCAGAGATGGCTCTTGTAAAACCCATCACCAATTTCAACAATGTGAGCCCAAAATTCGGAAGCAGCAGAGCTTGCTCATATAACAAGTTGAGCAGCACAATAAGAATGTCTGCAACTGCACAGCCCACAGCCAAAAAGTCCCCAAAGAAAGCCATCAAGGAGACCCTTTTGGCACCAAGGTTCTACACCACTGACTTTGATGAGATGGAGACCCTTTTCAACACTGAGATCAACAAGAACCTCAACCAGGCTGAGTTTGAGGCTCTGCTTCAGGAGTTCAAGACTGACTACAACCAGACCCACTTTGTGAGGAACAAGGAGTTCAAGGAGGCTGCTGATAAGCTCCAAGGCCCCCTCAGACAGATTTTTGTGGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGCTTCCTTCTTTACAAAGAGCTTGGAAGAAGGCTCAAGAAAACCAATCCAGTGGTGGCTGAGATATTCTCTCTCATGTCCAGGGATGAAGCCAGGCATGCTGGGTTTTTGAACAAGGGCTTGTCTGATTTTAATTTGGCATTGGACTTGGGGTTTCTGACAAAGGCCAGGAAATACACATTTTTCAAGCCAAAGTTCATCTTCTATGCCACTTATTTATCTGAGAAGATTGGATACTGGAGATACATTACCATATACAGGCATCTCAAGGAGAACCCTGAGTACCAGTGCTATCCCATTTTCAAGTATTTTGAGAACTGGTGTCAGGATGAGAACAGGCATGGTGACTTCTTTTCTGCACTGATGAAGGCACAACCCCAATTCCTTAATGACTGGAAGGCAAAGTTGTGGTCTCGATTCTTCTGCTTATCGGTATATGTGACAATGTACCTAAATGATTGCCAACGCACAGCTTTCTATGAAGGCATTGGGCTCAACACAAAAGAATTTGATATGCATGTTATCATTGAGACAAATCGCACCACAGCCAGAATTTTCCCAGCTGTGCTTGATGTTGAGAACCCAGAATTCAAAAGGAAACTGGACCGCATGGTGGAGATTAACCAGAAGCTGATTGCTGTTGGGGAGAGCGACGACATTCCCTTGGTGAAGAACTTAAAGAGGATACCTATGGTTGCTGCATTGGCCTCTGAGCTTCTGGCTGCATACCTTATGCCACCCATTGAGTCTGGATCTGTTGATTTTGCTGAGTTTGAAACCCAACTGGTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004497 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016043 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019222 GO:0019438 GO:0019866 GO:0031090 GO:0031323 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042170 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048529 GO:0050789 GO:0050794 GO:0051171 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Rubrerythrin

Protein Analysis

418

Amino Acids

48.42

Weight (kDa)

8.85

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56940 AT3G56940
fragaria_vesca	FvH4_1g28960 FvH4_1g28960
malus_domestica	MD00G1107700.v1.1
prunus_persica	Prupe.7G022500_v2.0.a1
pyrus_communis	pycom12g09220
rosa_chinensis	RchiOBHm_Chr3g0494361
rosa_laevigata	RLG00000022676
rosa_multiflora	Rmu_sc0031350.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391150
rosa_rugosa	Rorug03G0264700
rosa_samantha	Rh3AG315100 Rh3AG315200 Rh3BG350400 Rh3CG347100 Rh3DG349700
rosa_wichuraiana	Rw3G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	1 cut(s)	1066
AclWI	GGATC	1 cut(s)	1219
AcsI	RAATTY	4 cut(s)	104, 965, 1011, 1046
AcuI	CTGAAG	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	3 cut(s)	743, 908, 1250
AfiI	CCNNNNNNNGG	4 cut(s)	107, 298, 717, 1072
AgsI	TTSAA	9 cut(s)	88, 271, 331, 376, 571, 646, 763, 1051, 1235
AjnI	CCWGG	4 cut(s)	297, 539, 551, 626
AluBI	AGCT	7 cut(s)	122, 394, 481, 932, 1022, 1090, 1174
AluI	AGCT	7 cut(s)	122, 394, 481, 932, 1022, 1090, 1174
Alw26I	GTCTC	4 cut(s)	206, 254, 876, 983
AlwI	GGATC	1 cut(s)	1219
AlwNI	CAGNNNCTG	1 cut(s)	1090
AoxI	GGCC	3 cut(s)	400, 624, 1164
ApeKI	GCWGC	7 cut(s)	5, 50, 114, 144, 383, 1157, 1181
ApoI	RAATTY	4 cut(s)	104, 965, 1011, 1046
ArsI	GACNNNNNNTTYG	2 cut(s)	854, 886
AspS9I	GGNCC	2 cut(s)	401, 1063
AsuHPI	GGTGA	3 cut(s)	70, 815, 1138
AvaII	GGWCC	1 cut(s)	1063
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	2 cut(s)	101, 954
BarI	GAAGNNNNNNTAC	2 cut(s)	677, 709
BbvI	GCAGC	7 cut(s)	17, 62, 126, 156, 370, 1144, 1168
BccI	CCATC	5 cut(s)	7, 52, 83, 212, 250
BcgI	CGANNNNNNTGC	2 cut(s)	864, 898
BciT130I	CCWGG	4 cut(s)	299, 541, 553, 628
BciVI	GTATCC	2 cut(s)	686, 1137
BcoDI	GTCTC	4 cut(s)	206, 254, 876, 983
BfuI	GTATCC	2 cut(s)	686, 1137
BisI	GCNGC	7 cut(s)	6, 51, 115, 145, 384, 1158, 1182
BlsI	GCNGC	7 cut(s)	7, 52, 116, 146, 385, 1159, 1183
Bme1390I	CCNGG	4 cut(s)	299, 541, 553, 628
Bme18I	GGWCC	1 cut(s)	1063
BmgT120I	GGNCC	2 cut(s)	401, 1063
BmiI	GGNNCC	2 cut(s)	225, 403
BmrFI	CCNGG	4 cut(s)	299, 541, 553, 628
BmsI	GCATC	1 cut(s)	730
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpmI	CTGGAG	1 cut(s)	718
BpuEI	CTTGAG	2 cut(s)	479, 710
BsaI	GGTCTC	3 cut(s)	206, 254, 876
BsaJI	CCNNGG	4 cut(s)	227, 397, 540, 1122
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 298, 717, 1072
Bse1I	ACTGG	7 cut(s)	509, 701, 745, 782, 857, 1065, 1248
BseBI	CCWGG	4 cut(s)	299, 541, 553, 628
BseDI	CCNNGG	4 cut(s)	227, 397, 540, 1122
BseGI	GGATG	2 cut(s)	550, 793
BseLI	CCNNNNNNNGG	4 cut(s)	107, 298, 717, 1072
BseMII	CTCAG	9 cut(s)	267, 294, 421, 441, 510, 672, 729, 1161, 1218
BseNI	ACTGG	7 cut(s)	509, 701, 745, 782, 857, 1065, 1248
BseXI	GCAGC	7 cut(s)	17, 62, 126, 156, 370, 1144, 1168
BseYI	CCCAGC	2 cut(s)	560, 1018
BsgI	GTGCAG	2 cut(s)	153, 801
BshFI	GGCC	3 cut(s)	402, 626, 1166
BshNI	GGYRCC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	4 cut(s)	107, 298, 717, 1072
BsmAI	GTCTC	4 cut(s)	206, 254, 876, 983
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	402, 626, 1166
Bso31I	GGTCTC	3 cut(s)	206, 254, 876
Bsp1286I	GDGCHC	2 cut(s)	101, 954
Bsp143I	GATC	2 cut(s)	279, 1211
BspACI	CCGC	1 cut(s)	1066
BspANI	GGCC	3 cut(s)	402, 626, 1166
BspCNI	CTCAG	9 cut(s)	268, 295, 420, 442, 511, 673, 730, 1162, 1219
BspLI	GGNNCC	2 cut(s)	225, 403
BspPI	GGATC	1 cut(s)	1219
BspT107I	GGYRCC	1 cut(s)	223
BspTNI	GGTCTC	3 cut(s)	206, 254, 876
BsrI	ACTGG	7 cut(s)	509, 701, 745, 782, 857, 1065, 1248
BssECI	CCNNGG	4 cut(s)	227, 397, 540, 1122
BssMI	GATC	2 cut(s)	279, 1211
BssT1I	CCWWGG	3 cut(s)	227, 397, 1122
Bst2UI	CCWGG	4 cut(s)	299, 541, 553, 628
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	124, 558
BstDEI	CTNAG	9 cut(s)	276, 303, 407, 450, 519, 681, 738, 1170, 1227
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	2 cut(s)	550, 793
BstKTI	GATC	2 cut(s)	282, 1214
BstMAI	GTCTC	4 cut(s)	206, 254, 876, 983
BstMBI	GATC	2 cut(s)	279, 1211
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 59, 123, 557, 1163
BstNI	CCWGG	4 cut(s)	299, 541, 553, 628
BstNSI	RCATGY	2 cut(s)	560, 980
BstSCI	CCNGG	4 cut(s)	297, 539, 551, 626
BstV1I	GCAGC	7 cut(s)	17, 62, 126, 156, 370, 1144, 1168
BstX2I	RGATCY	1 cut(s)	1211
BstXI	CCANNNNNNTGG	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	1211
BsuI	GTATCC	2 cut(s)	686, 1137
BsuRI	GGCC	3 cut(s)	402, 626, 1166
BtsCI	GGATG	2 cut(s)	550, 793
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	6 cut(s)	240, 273, 444, 516, 752, 818
Cac8I	GCNNGC	2 cut(s)	124, 558
CaiI	CAGNNNCTG	1 cut(s)	1090
Cfr13I	GGNCC	2 cut(s)	401, 1063
Csp6I	GTAC	3 cut(s)	742, 907, 1249
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviAII	CATG	5 cut(s)	535, 557, 800, 977, 1069
CviQI	GTAC	3 cut(s)	742, 907, 1249
DdeI	CTNAG	9 cut(s)	276, 303, 407, 450, 519, 681, 738, 1170, 1227
DpnI	GATC	2 cut(s)	281, 1213
DpnII	GATC	2 cut(s)	279, 1211
DraIII	CACNNNGTG	1 cut(s)	358
Eco130I	CCWWGG	3 cut(s)	227, 397, 1122
Eco24I	GRGCYC	2 cut(s)	101, 954
Eco31I	GGTCTC	3 cut(s)	206, 254, 876
Eco47I	GGWCC	1 cut(s)	1063
Eco57I	CTGAAG	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	1046
EcoRII	CCWGG	4 cut(s)	297, 539, 551, 626
EcoT14I	CCWWGG	3 cut(s)	227, 397, 1122
EcoT22I	ATGCAT	1 cut(s)	978
EcoT38I	GRGCYC	2 cut(s)	101, 954
ErhI	CCWWGG	3 cut(s)	227, 397, 1122
FaeI	CATG	5 cut(s)	538, 560, 803, 980, 1072
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	5 cut(s)	534, 556, 799, 976, 1068
Fnu4HI	GCNGC	7 cut(s)	6, 51, 115, 145, 384, 1158, 1182
FokI	GGATG	2 cut(s)	557, 800
FriOI	GRGCYC	2 cut(s)	101, 954
Fsp4HI	GCNGC	7 cut(s)	6, 51, 115, 145, 384, 1158, 1182
GluI	GCNGC	7 cut(s)	6, 51, 115, 145, 384, 1158, 1182
GsaI	CCCAGC	2 cut(s)	564, 1022
GsuI	CTGGAG	1 cut(s)	718
HaeIII	GGCC	3 cut(s)	402, 626, 1166
Hin1II	CATG	5 cut(s)	538, 560, 803, 980, 1072
HinfI	GANTC	2 cut(s)	876, 1205
HphI	GGTGA	3 cut(s)	70, 815, 1138
Hpy166II	GTNNAC	1 cut(s)	1249
Hpy188I	TCNGA	6 cut(s)	110, 410, 586, 618, 682, 1171
Hpy188III	TCNNGA	6 cut(s)	323, 331, 496, 785, 873, 1209
Hpy8I	GTNNAC	1 cut(s)	1249
Hpy99I	CGWCG	1 cut(s)	1115
HpyAV	CCTTC	5 cut(s)	476, 483, 820, 850, 935
HpyCH4V	TGCA	7 cut(s)	164, 170, 444, 818, 976, 1160, 1184
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 59, 123, 557, 1163
HpyF3I	CTNAG	9 cut(s)	276, 303, 407, 450, 519, 681, 738, 1170, 1227
Hsp92II	CATG	5 cut(s)	538, 560, 803, 980, 1072
Kzo9I	GATC	2 cut(s)	279, 1211
LmnI	GCTCC	2 cut(s)	43, 399
Lsp1109I	GCAGC	7 cut(s)	17, 62, 126, 156, 370, 1144, 1168
LweI	GCATC	1 cut(s)	730
MaeIII	GTNAC	2 cut(s)	803, 898
MalI	GATC	2 cut(s)	281, 1213
MboI	GATC	2 cut(s)	279, 1211
MboII	GAAGA	5 cut(s)	498, 652, 697, 871, 1141
MflI	RGATCY	1 cut(s)	1211
MhlI	GDGCHC	2 cut(s)	101, 954
MluCI	AATT	7 cut(s)	82, 104, 592, 839, 965, 1011, 1046
MlyI	GAGTC	1 cut(s)	1214
MnlI	CCTC	8 cut(s)	302, 304, 354, 373, 416, 429, 1134, 1177
Mph1103I	ATGCAT	1 cut(s)	978
MseI	TTAA	4 cut(s)	591, 846, 1080, 1136
MspA1I	CMGCKG	1 cut(s)	1022
MspR9I	CCNGG	4 cut(s)	299, 541, 553, 628
MvaI	CCWGG	4 cut(s)	299, 541, 553, 628
MwoI	GCNNNNNNNGC	5 cut(s)	14, 59, 123, 557, 1163
NdeII	GATC	2 cut(s)	279, 1211
NlaIII	CATG	5 cut(s)	538, 560, 803, 980, 1072
NlaIV	GGNNCC	2 cut(s)	225, 403
NmuCI	GTSAC	2 cut(s)	803, 898
NsiI	ATGCAT	1 cut(s)	978
NspI	RCATGY	2 cut(s)	560, 980
PaeI	GCATGC	1 cut(s)	560
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	7 cut(s)	7, 52, 116, 146, 385, 1159, 1183
PleI	GAGTC	1 cut(s)	1213
PpsI	GAGTC	1 cut(s)	1213
Psp6I	CCWGG	4 cut(s)	297, 539, 551, 626
PspFI	CCCAGC	2 cut(s)	560, 1018
PspGI	CCWGG	4 cut(s)	297, 539, 551, 626
PspN4I	GGNNCC	2 cut(s)	225, 403
PspPI	GGNCC	2 cut(s)	401, 1063
PsrI	GAACNNNNNNTAC	2 cut(s)	725, 757
PstNI	CAGNNNCTG	1 cut(s)	1090
PsuI	RGATCY	1 cut(s)	1211
PvuII	CAGCTG	1 cut(s)	1022
RsaI	GTAC	3 cut(s)	743, 908, 1250
RsaNI	GTAC	3 cut(s)	742, 907, 1249
SaqAI	TTAA	4 cut(s)	591, 846, 1080, 1136
SatI	GCNGC	7 cut(s)	6, 51, 115, 145, 384, 1158, 1182
Sau3AI	GATC	2 cut(s)	279, 1211
Sau96I	GGNCC	2 cut(s)	401, 1063
SchI	GAGTC	1 cut(s)	1214
ScrFI	CCNGG	4 cut(s)	299, 541, 553, 628
SduI	GDGCHC	2 cut(s)	101, 954
SfaNI	GCATC	1 cut(s)	730
SinI	GGWCC	1 cut(s)	1063
SmlI	CTYRAG	2 cut(s)	494, 725
SmoI	CTYRAG	2 cut(s)	494, 725
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	7 cut(s)	82, 104, 592, 839, 965, 1011, 1046
SsiI	CCGC	1 cut(s)	1066
StyD4I	CCNGG	4 cut(s)	297, 539, 551, 626
StyI	CCWWGG	3 cut(s)	227, 397, 1122
TaqI	TCGA	1 cut(s)	874
TasI	AATT	7 cut(s)	82, 104, 592, 839, 965, 1011, 1046
TatI	WGTACW	1 cut(s)	1248
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	4 cut(s)	591, 846, 1080, 1136
Tru9I	TTAA	4 cut(s)	591, 846, 1080, 1136
TscAI	CASTG	6 cut(s)	247, 280, 451, 516, 752, 825
TseFI	GTSAC	2 cut(s)	803, 898
TseI	GCWGC	7 cut(s)	5, 50, 114, 144, 383, 1157, 1181
Tsp45I	GTSAC	2 cut(s)	803, 898
TspDTI	ATGAA	4 cut(s)	561, 646, 839, 954
TspRI	CASTG	6 cut(s)	247, 280, 451, 516, 752, 825
VpaK11BI	GGWCC	1 cut(s)	1063
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	4 cut(s)	104, 965, 1011, 1046
XceI	RCATGY	2 cut(s)	560, 980
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
Zsp2I	ATGCAT	1 cut(s)	978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.