Rh3DG349700

Magnesium-protoporphyrin IX monomethyl ester oxidative cyclase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
41498966 .. 41500989
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG349700.1

Sequence Viewer

Length: 1191 bp
ATGGCGCTTGTGAAACCCATCACGAATTTCAGCAATGTCGTTGCTCCCAAATTTGGGAATACCAGAAGCACTGCTAGTAGCAAGACGTCGAGCACCATGATCAGAATGTCGTCCACCAAAAAGTCCACTACTAAGAAAGCCATCAAGGAGACACTGTTGGCACCAAGGTTCTACACCACCGACTTTGATGAGATGGAGACCCTTTTCAACACCGAAATCAACAACAATTTGAACCAGGTTGAGTTTGAGGCTCTGCTTCAGGAGTTCAAGACGGACTACAACCAGACCCATTTTGTGAGGAACAAGGAGTTCAAGGTGGCTGCTGATAATCTGCAGGGCCCCCTCAGACAGATCTTTGTCGAGTTCTTGGAGAGGTCTTGTACTGCTGAGTTCTCTGGCTTCCTTCTTTACAAAGAGCTTGGAAGAAGGCTTAAGAAAACCAATCCAGTGGTAGCTGAGATATTCTCTCTCATGTCCAGGGATGAAGCCAGGCATGCCGGTTTCTTGAACAAAGGCCTGTCGGATTTCAATTTGGCATTGGACTTGGGGTTTCTGACCAAGGCAAGAAAATACACATTTTTCAAACCAAAGTTCATCTTCTATGCCACTTATTTGTCTGAGAAAATTGGATACTGGAGATACATCACCATATACAGGCATCTCAAGGCAAATCCCGAGTACCAGTGCTATCCCATTTTCAAGTATTTTGAGAATTGGTGCCAGGATGAGAACAGACATGGTGACTTCTTTTCTGCACTCATGAAGGCGCAACCCCAGTTCCTAAATGACTGGAAGGCAAAGTTGTGGTCTCGATTCTTCTGCTTATCGGTATATGTGACAATGTACCTAAATGATTGCCAACGGACAGCTTTCTATGAAGGCATCGGGCTAAATACAAAAGAATTTGATATGCATGTCATCATTGAGACAAATCGCACAACAGCCAGAATTTTCCCAGCCGTGCTTGATGTTGAGAACCCAGAATTCAAAAGGAAACTTGACCGCATGGTGGAGATTAACCAGAAGCTCATTGCTGTTGGGGAGAGCGACGACATTCCCCTGGTGAAAAATTTGAAGAGGATACCAATTGTTGCTGCATTGGCCTCTGAACTTCTGGCTGCATACTTAATGCCACCCATTGAGTCTGGATCCGTCGATTTTGCAGAGTTCGAGCCCCAAGTGGTGTACTAA

Protein Analysis

396

Amino Acids

46.04

Weight (kDa)

8.82

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubrerythrin PF02915 121 - 254 3.6e-43 Rubrerythrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56940 AT3G56940
fragaria_vesca FvH4_1g28960 FvH4_1g28960
malus_domestica MD00G1107700.v1.1
prunus_persica Prupe.7G022500_v2.0.a1
pyrus_communis pycom12g09220
rosa_chinensis RchiOBHm_Chr3g0494361
rosa_laevigata RLG00000022676
rosa_multiflora Rmu_sc0031350.1_g000001
rosa_roxburghii Rroxscaffold_6G00391150
rosa_rugosa Rorug03G0264700
rosa_samantha Rh3AG315100 Rh3AG315200 Rh3BG350400 Rh3CG347100 Rh3DG349700
rosa_wichuraiana Rw3G027520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AccB1I GGYRCC 2 cut(s) 160, 717
AciI CCGC 1 cut(s) 1003
AclWI GGATC 2 cut(s) 1143, 1156
AcsI RAATTY 6 cut(s) 25, 50, 902, 948, 983, 1069
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 4 cut(s) 382, 680, 845, 1187
AfiI CCNNNNNNNGG 4 cut(s) 53, 54, 654, 1009
AflII CTTAAG 1 cut(s) 431
AjnI CCWGG 5 cut(s) 234, 476, 488, 720, 1059
AluBI AGCT 4 cut(s) 418, 455, 869, 1027
AluI AGCT 4 cut(s) 418, 455, 869, 1027
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 4 cut(s) 143, 191, 813, 920
AlwI GGATC 2 cut(s) 1143, 1156
Ama87I CYCGRG 1 cut(s) 674
AoxI GGCC 3 cut(s) 337, 514, 1101
ApaI GGGCCC 1 cut(s) 341
ApeKI GCWGC 3 cut(s) 320, 1094, 1118
ApoI RAATTY 6 cut(s) 25, 50, 902, 948, 983, 1069
ArsI GACNNNNNNTTYG 2 cut(s) 791, 823
AspLEI GCGC 2 cut(s) 7, 769
AspS9I GGNCC 2 cut(s) 337, 338
AsuHPI GGTGA 3 cut(s) 637, 752, 1075
AvaI CYCGRG 1 cut(s) 674
BaeGI GKGCMC 1 cut(s) 341
BamHI GGATCC 1 cut(s) 1148
BanI GGYRCC 2 cut(s) 160, 717
BanII GRGCYC 2 cut(s) 341, 1176
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 307, 1081, 1105
BccI CCATC 3 cut(s) 26, 149, 187
BceAI ACGGC 1 cut(s) 944
BcgI CGANNNNNNTGC 2 cut(s) 801, 835
BciT130I CCWGG 5 cut(s) 236, 478, 490, 722, 1061
BciVI GTATCC 2 cut(s) 623, 1074
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 4 cut(s) 143, 191, 813, 920
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 332
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 431
BfuI GTATCC 2 cut(s) 623, 1074
BglII AGATCT 1 cut(s) 351
BisI GCNGC 3 cut(s) 321, 1095, 1119
BlsI GCNGC 3 cut(s) 322, 1096, 1120
Bme1390I CCNGG 5 cut(s) 236, 478, 490, 722, 1061
BmeT110I CYCGRG 1 cut(s) 674
BmgT120I GGNCC 2 cut(s) 337, 338
BmiI GGNNCC 5 cut(s) 162, 339, 340, 719, 1150
BmrFI CCNGG 5 cut(s) 236, 478, 490, 722, 1061
BmrI ACTGGG 1 cut(s) 769
BmsI GCATC 2 cut(s) 667, 891
BmuI ACTGGG 1 cut(s) 769
BplI GAGNNNNNCTC 2 cut(s) 449, 481
BpmI CTGGAG 1 cut(s) 655
BpuEI CTTGAG 1 cut(s) 647
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 2 cut(s) 191, 813
BsaJI CCNNGG 4 cut(s) 164, 477, 558, 1059
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 54, 654, 1009
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 5 cut(s) 446, 638, 682, 775, 794
Bse3DI GCAATG 2 cut(s) 40, 1029
BseBI CCWGG 5 cut(s) 236, 478, 490, 722, 1061
BseDI CCNNGG 4 cut(s) 164, 477, 558, 1059
BseGI GGATG 2 cut(s) 487, 730
BseLI CCNNNNNNNGG 4 cut(s) 53, 54, 654, 1009
BseMI GCAATG 2 cut(s) 40, 1029
BseMII CTCAG 4 cut(s) 358, 378, 447, 609
BseNI ACTGG 5 cut(s) 446, 638, 682, 775, 794
BseSI GKGCMC 1 cut(s) 341
BseXI GCAGC 3 cut(s) 307, 1081, 1105
BseYI CCCAGC 1 cut(s) 955
BsgI GTGCAG 1 cut(s) 738
BshFI GGCC 3 cut(s) 339, 516, 1103
BshNI GGYRCC 2 cut(s) 160, 717
BsiHKAI GWGCWC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 1 cut(s) 498
BslI CCNNNNNNNGG 4 cut(s) 53, 54, 654, 1009
BsmAI GTCTC 4 cut(s) 143, 191, 813, 920
BsnI GGCC 3 cut(s) 339, 516, 1103
Bso31I GGTCTC 2 cut(s) 191, 813
BsoBI CYCGRG 1 cut(s) 674
Bsp120I GGGCCC 1 cut(s) 337
Bsp1286I GDGCHC 3 cut(s) 95, 341, 1176
Bsp143I GATC 3 cut(s) 99, 351, 1148
BspACI CCGC 1 cut(s) 1003
BspANI GGCC 3 cut(s) 339, 516, 1103
BspCNI CTCAG 4 cut(s) 357, 379, 448, 610
BspHI TCATGA 1 cut(s) 759
BspLI GGNNCC 5 cut(s) 162, 339, 340, 719, 1150
BspMAI CTGCAG 1 cut(s) 336
BspPI GGATC 2 cut(s) 1143, 1156
BspT107I GGYRCC 2 cut(s) 160, 717
BspTI CTTAAG 1 cut(s) 431
BspTNI GGTCTC 2 cut(s) 191, 813
BsrDI GCAATG 2 cut(s) 40, 1029
BsrFI RCCGGY 1 cut(s) 497
BsrI ACTGG 5 cut(s) 446, 638, 682, 775, 794
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 4 cut(s) 164, 477, 558, 1059
BssMI GATC 3 cut(s) 99, 351, 1148
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 2 cut(s) 164, 558
Bst2UI CCWGG 5 cut(s) 236, 478, 490, 722, 1061
Bst4CI ACNGT 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 1070
BstACI GRCGYC 1 cut(s) 86
BstAFI CTTAAG 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 5 cut(s) 132, 344, 387, 456, 618
BstF5I GGATG 2 cut(s) 487, 730
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 769
BstKTI GATC 3 cut(s) 102, 354, 1151
BstMAI GTCTC 4 cut(s) 143, 191, 813, 920
BstMBI GATC 3 cut(s) 99, 351, 1148
BstMWI GCNNNNNNNGC 2 cut(s) 494, 1100
BstNI CCWGG 5 cut(s) 236, 478, 490, 722, 1061
BstNSI RCATGY 2 cut(s) 497, 917
BstSCI CCNGG 5 cut(s) 234, 476, 488, 720, 1059
BstSFI CTRYAG 1 cut(s) 332
BstSLI GKGCMC 1 cut(s) 341
BstV1I GCAGC 3 cut(s) 307, 1081, 1105
BstX2I RGATCY 2 cut(s) 351, 1148
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 2 cut(s) 351, 1148
BsuI GTATCC 2 cut(s) 623, 1074
BsuRI GGCC 3 cut(s) 339, 516, 1103
BtsCI GGATG 2 cut(s) 487, 730
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 4 cut(s) 69, 152, 453, 689
Cac8I GCNNGC 1 cut(s) 495
CciI TCATGA 1 cut(s) 759
CfoI GCGC 2 cut(s) 7, 769
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 2 cut(s) 337, 338
CsiI ACCWGGT 1 cut(s) 234
Csp6I GTAC 4 cut(s) 381, 679, 844, 1186
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 7 cut(s) 97, 472, 494, 737, 760, 914, 1006
CviQI GTAC 4 cut(s) 381, 679, 844, 1186
DdeI CTNAG 5 cut(s) 132, 344, 387, 456, 618
DpnI GATC 3 cut(s) 101, 353, 1150
DpnII GATC 3 cut(s) 99, 351, 1148
Eam1104I CTCTTC 1 cut(s) 1070
EarI CTCTTC 1 cut(s) 1070
Eco130I CCWWGG 2 cut(s) 164, 558
Eco147I AGGCCT 1 cut(s) 516
Eco24I GRGCYC 2 cut(s) 341, 1176
Eco31I GGTCTC 2 cut(s) 191, 813
Eco57I CTGAAG 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 674
EcoO109I RGGNCCY 2 cut(s) 337, 338
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 5 cut(s) 234, 476, 488, 720, 1059
EcoT14I CCWWGG 2 cut(s) 164, 558
EcoT22I ATGCAT 1 cut(s) 915
EcoT38I GRGCYC 2 cut(s) 341, 1176
ErhI CCWWGG 2 cut(s) 164, 558
FaeI CATG 7 cut(s) 100, 475, 497, 740, 763, 917, 1009
FalI AAGNNNNNCTT 2 cut(s) 581, 613
FatI CATG 7 cut(s) 96, 471, 493, 736, 759, 913, 1005
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 321, 1095, 1119
FokI GGATG 2 cut(s) 494, 737
FriOI GRGCYC 2 cut(s) 341, 1176
Fsp4HI GCNGC 3 cut(s) 321, 1095, 1119
FspBI CTAG 1 cut(s) 75
GlaI GCGC 2 cut(s) 6, 768
GluI GCNGC 3 cut(s) 321, 1095, 1119
GsaI CCCAGC 1 cut(s) 959
GsuI CTGGAG 1 cut(s) 655
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 339, 516, 1103
HapII CCGG 1 cut(s) 498
HhaI GCGC 2 cut(s) 7, 769
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 7 cut(s) 100, 475, 497, 740, 763, 917, 1009
Hin6I GCGC 2 cut(s) 5, 767
HinP1I GCGC 2 cut(s) 5, 767
HinfI GANTC 2 cut(s) 813, 1142
HpaII CCGG 1 cut(s) 498
HphI GGTGA 3 cut(s) 637, 752, 1075
Hpy166II GTNNAC 3 cut(s) 114, 126, 1186
Hpy188I TCNGA 6 cut(s) 104, 347, 523, 555, 619, 1108
Hpy188III TCNNGA 8 cut(s) 22, 260, 268, 505, 674, 760, 810, 1146
Hpy8I GTNNAC 3 cut(s) 114, 126, 1186
Hpy99I CGWCG 3 cut(s) 91, 1052, 1157
HpyAV CCTTC 5 cut(s) 413, 420, 757, 787, 872
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 6 cut(s) 334, 755, 913, 1097, 1121, 1163
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 1100
HpyF3I CTNAG 5 cut(s) 132, 344, 387, 456, 618
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 7 cut(s) 100, 475, 497, 740, 763, 917, 1009
HspAI GCGC 2 cut(s) 5, 767
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 3 cut(s) 99, 351, 1148
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 3 cut(s) 307, 1081, 1105
LweI GCATC 2 cut(s) 667, 891
MabI ACCWGGT 1 cut(s) 234
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 740, 835
MalI GATC 3 cut(s) 101, 353, 1150
MboI GATC 3 cut(s) 99, 351, 1148
MboII GAAGA 4 cut(s) 435, 589, 808, 1087
MfeI CAATTG 1 cut(s) 1086
MflI RGATCY 2 cut(s) 351, 1148
MhlI GDGCHC 3 cut(s) 95, 341, 1176
MlyI GAGTC 1 cut(s) 1151
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 6 cut(s) 241, 291, 353, 366, 1071, 1114
Mph1103I ATGCAT 1 cut(s) 915
MseI TTAA 3 cut(s) 432, 1017, 1127
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 5 cut(s) 236, 478, 490, 722, 1061
MunI CAATTG 1 cut(s) 1086
MvaI CCWGG 5 cut(s) 236, 478, 490, 722, 1061
MwoI GCNNNNNNNGC 2 cut(s) 494, 1100
NdeII GATC 3 cut(s) 99, 351, 1148
NlaIII CATG 7 cut(s) 100, 475, 497, 740, 763, 917, 1009
NlaIV GGNNCC 5 cut(s) 162, 339, 340, 719, 1150
NmuCI GTSAC 2 cut(s) 740, 835
NsiI ATGCAT 1 cut(s) 915
NspI RCATGY 2 cut(s) 497, 917
PaeI GCATGC 1 cut(s) 497
PagI TCATGA 1 cut(s) 759
PceI AGGCCT 1 cut(s) 516
PfeI GAWTC 1 cut(s) 813
PkrI GCNGC 3 cut(s) 322, 1096, 1120
PleI GAGTC 1 cut(s) 1150
PpsI GAGTC 1 cut(s) 1150
Psp6I CCWGG 5 cut(s) 234, 476, 488, 720, 1059
PspFI CCCAGC 1 cut(s) 955
PspGI CCWGG 5 cut(s) 234, 476, 488, 720, 1059
PspN4I GGNNCC 5 cut(s) 162, 339, 340, 719, 1150
PspOMI GGGCCC 1 cut(s) 337
PspPI GGNCC 2 cut(s) 337, 338
PstI CTGCAG 1 cut(s) 336
PsuI RGATCY 2 cut(s) 351, 1148
RsaI GTAC 4 cut(s) 382, 680, 845, 1187
RsaNI GTAC 4 cut(s) 381, 679, 844, 1186
SaqAI TTAA 3 cut(s) 432, 1017, 1127
SatI GCNGC 3 cut(s) 321, 1095, 1119
Sau3AI GATC 3 cut(s) 99, 351, 1148
Sau96I GGNCC 2 cut(s) 337, 338
SchI GAGTC 1 cut(s) 1151
ScrFI CCNGG 5 cut(s) 236, 478, 490, 722, 1061
SduI GDGCHC 3 cut(s) 95, 341, 1176
SexAI ACCWGGT 1 cut(s) 234
SfaNI GCATC 2 cut(s) 667, 891
SfcI CTRYAG 1 cut(s) 332
SmlI CTYRAG 2 cut(s) 431, 662
SmoI CTYRAG 2 cut(s) 431, 662
SphI GCATGC 1 cut(s) 497
SseBI AGGCCT 1 cut(s) 516
SsiI CCGC 1 cut(s) 1003
SspMI CTAG 1 cut(s) 75
StuI AGGCCT 1 cut(s) 516
StyD4I CCNGG 5 cut(s) 234, 476, 488, 720, 1059
StyI CCWWGG 2 cut(s) 164, 558
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 1 cut(s) 89
TaqI TCGA 5 cut(s) 89, 360, 811, 1155, 1170
TatI WGTACW 2 cut(s) 380, 1185
TfiI GAWTC 1 cut(s) 813
Tru1I TTAA 3 cut(s) 432, 1017, 1127
Tru9I TTAA 3 cut(s) 432, 1017, 1127
TscAI CASTG 4 cut(s) 76, 159, 453, 689
TseFI GTSAC 2 cut(s) 740, 835
TseI GCWGC 3 cut(s) 320, 1094, 1118
Tsp45I GTSAC 2 cut(s) 740, 835
TspDTI ATGAA 4 cut(s) 498, 583, 776, 891
TspGWI ACGGA 3 cut(s) 287, 877, 1141
TspRI CASTG 4 cut(s) 76, 159, 453, 689
Vha464I CTTAAG 1 cut(s) 431
XapI RAATTY 6 cut(s) 25, 50, 902, 948, 983, 1069
XceI RCATGY 2 cut(s) 497, 917
XspI CTAG 1 cut(s) 75
ZraI GACGTC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.