Rh3CG347100

Magnesium-protoporphyrin IX monomethyl ester oxidative cyclase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
41207369 .. 41209402
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG347100.1

Sequence Viewer

Length: 1200 bp
ATGGCGCTTGTGAAACCCATCACGAATTTCAGCAATGTCGTTGCTCCCAAATTTGGGAATACCAGAAGCACTGCTAGTAGCAAGACGTCGAGCACCATGATCAGAATGTCGTCGTCGTCGTCCACCAAAAAGTCCACTACTAAGAAAGCCATCAAGGAGACACTGTTGGCACCAAGGTTCTACACCACCGACTTTGATGAGATGGAGACCCTTTTCAACACCGAAATCAACAACAATTTGAACCAGGTTGAGTTTGAGGCTCTGCTTCAGGAGTTCAAGACGGACTACAACCAGACCCATTTTGTGAGGAACAAGGAGTTCAAGGTGGCTGCTGATAATCTGCAGGGCCCCCTCAGACAGATCTTTGTCGAGTTCTTGGAGAGGTCTTGTACCGCTGAGTTCTCTGGCTTCCTTCTTTACAAAGAGCTTGGAAGAAGGCTTAAGAAAACCAATCCAGTGGTAGCTGAGATATTCTCTCTCATGTCCAGGGATGAAGCCAGGCATGCCGGTTTCTTGAACAAAGGCCTGTCGGATTTCAATTTGGCATTGGACTTGGGGTTTCTGACCAAGGCAAGAAAATACACATTTTTCAAACCAAAGTTCATCTTCTATGCCACTTATTTGTCTGAGAAAATTGGATACTGGAGATACATCACCATATACAGGCATCTCAAGGCAAATCCCGAGTACCAGTGCTATCCCATTTTCAAGTATTTTGAGAATTGGTGCCAGGATGAGAACAGACATGGTGACTTCTTTTCTGCACTCATGAAGGCGCAACCCCAGTTCCTAAACGACTGGAAGGCAAAGTTGTGGTCTCGATTCTTCTGCTTATCGGTATATGTGACAATGTACCTAAATGATTGCCAACGGACAGCTTTCTATGAAGGCATCGGGCTAAATACAAAAGAATTTGATATGCATGTCATCATTGAGACAAATCGCACAACAGCCAGAATTTTCCCAGCCGTGCTTGATGTTGAGAACCCAGAATTCAAAAGGAAACTTGACCGCATGGTGGAGATTAACCAGAAGCTCATTGCTGTTGGGGAGAGCGACGACATTCCCCTGGTGAAAAATTTGAAGAGGATACCAATTGTTGCTGCATTGGCCTCTGAACTTCTGGCTGCATACTTAATGCCACCCATTGAGTCTGGATCCGTCGATTTTGCAGAGTTCGAGCCCCAAGTGGTGTACTAA

Protein Analysis

399

Amino Acids

46.31

Weight (kDa)

8.82

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubrerythrin PF02915 124 - 257 3.7e-43 Rubrerythrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56940 AT3G56940
fragaria_vesca FvH4_1g28960 FvH4_1g28960
malus_domestica MD00G1107700.v1.1
prunus_persica Prupe.7G022500_v2.0.a1
pyrus_communis pycom12g09220
rosa_chinensis RchiOBHm_Chr3g0494361
rosa_laevigata RLG00000022676
rosa_multiflora Rmu_sc0031350.1_g000001
rosa_roxburghii Rroxscaffold_6G00391150
rosa_rugosa Rorug03G0264700
rosa_samantha Rh3AG315100 Rh3AG315200 Rh3BG350400 Rh3CG347100 Rh3DG349700
rosa_wichuraiana Rw3G027520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AccB1I GGYRCC 2 cut(s) 169, 726
AciI CCGC 2 cut(s) 393, 1012
AclWI GGATC 2 cut(s) 1152, 1165
AcsI RAATTY 6 cut(s) 25, 50, 911, 957, 992, 1078
AcuI CTGAAG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 4 cut(s) 391, 689, 854, 1196
AfiI CCNNNNNNNGG 4 cut(s) 53, 54, 663, 1018
AflII CTTAAG 1 cut(s) 440
AjnI CCWGG 5 cut(s) 243, 485, 497, 729, 1068
AluBI AGCT 4 cut(s) 427, 464, 878, 1036
AluI AGCT 4 cut(s) 427, 464, 878, 1036
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 4 cut(s) 152, 200, 822, 929
AlwI GGATC 2 cut(s) 1152, 1165
Ama87I CYCGRG 1 cut(s) 683
AoxI GGCC 3 cut(s) 346, 523, 1110
ApaI GGGCCC 1 cut(s) 350
ApeKI GCWGC 3 cut(s) 329, 1103, 1127
ApoI RAATTY 6 cut(s) 25, 50, 911, 957, 992, 1078
ArsI GACNNNNNNTTYG 2 cut(s) 800, 832
AspLEI GCGC 2 cut(s) 7, 778
AspS9I GGNCC 2 cut(s) 346, 347
AsuHPI GGTGA 3 cut(s) 646, 761, 1084
AvaI CYCGRG 1 cut(s) 683
BaeGI GKGCMC 1 cut(s) 350
BamHI GGATCC 1 cut(s) 1157
BanI GGYRCC 2 cut(s) 169, 726
BanII GRGCYC 2 cut(s) 350, 1185
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 316, 1090, 1114
BccI CCATC 3 cut(s) 26, 158, 196
BceAI ACGGC 1 cut(s) 953
BcgI CGANNNNNNTGC 2 cut(s) 810, 844
BciT130I CCWGG 5 cut(s) 245, 487, 499, 731, 1070
BciVI GTATCC 2 cut(s) 632, 1083
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 4 cut(s) 152, 200, 822, 929
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 341
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 440
BfuI GTATCC 2 cut(s) 632, 1083
BglII AGATCT 1 cut(s) 360
BisI GCNGC 3 cut(s) 330, 1104, 1128
BlsI GCNGC 3 cut(s) 331, 1105, 1129
Bme1390I CCNGG 5 cut(s) 245, 487, 499, 731, 1070
BmeT110I CYCGRG 1 cut(s) 683
BmgT120I GGNCC 2 cut(s) 346, 347
BmiI GGNNCC 5 cut(s) 171, 348, 349, 728, 1159
BmrFI CCNGG 5 cut(s) 245, 487, 499, 731, 1070
BmrI ACTGGG 1 cut(s) 778
BmsI GCATC 2 cut(s) 676, 900
BmuI ACTGGG 1 cut(s) 778
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 1 cut(s) 664
BpuEI CTTGAG 1 cut(s) 656
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 2 cut(s) 200, 822
BsaJI CCNNGG 4 cut(s) 173, 486, 567, 1068
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 54, 663, 1018
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 5 cut(s) 455, 647, 691, 784, 803
Bse3DI GCAATG 2 cut(s) 40, 1038
BseBI CCWGG 5 cut(s) 245, 487, 499, 731, 1070
BseDI CCNNGG 4 cut(s) 173, 486, 567, 1068
BseGI GGATG 2 cut(s) 496, 739
BseLI CCNNNNNNNGG 4 cut(s) 53, 54, 663, 1018
BseMI GCAATG 2 cut(s) 40, 1038
BseMII CTCAG 4 cut(s) 367, 387, 456, 618
BseNI ACTGG 5 cut(s) 455, 647, 691, 784, 803
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 3 cut(s) 316, 1090, 1114
BseYI CCCAGC 1 cut(s) 964
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 3 cut(s) 348, 525, 1112
BshNI GGYRCC 2 cut(s) 169, 726
BsiHKAI GWGCWC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 683
BsiSI CCGG 1 cut(s) 507
BslI CCNNNNNNNGG 4 cut(s) 53, 54, 663, 1018
BsmAI GTCTC 4 cut(s) 152, 200, 822, 929
BsnI GGCC 3 cut(s) 348, 525, 1112
Bso31I GGTCTC 2 cut(s) 200, 822
BsoBI CYCGRG 1 cut(s) 683
Bsp120I GGGCCC 1 cut(s) 346
Bsp1286I GDGCHC 3 cut(s) 95, 350, 1185
Bsp143I GATC 3 cut(s) 99, 360, 1157
BspACI CCGC 2 cut(s) 393, 1012
BspANI GGCC 3 cut(s) 348, 525, 1112
BspCNI CTCAG 4 cut(s) 366, 388, 457, 619
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 5 cut(s) 171, 348, 349, 728, 1159
BspMAI CTGCAG 1 cut(s) 345
BspPI GGATC 2 cut(s) 1152, 1165
BspT107I GGYRCC 2 cut(s) 169, 726
BspTI CTTAAG 1 cut(s) 440
BspTNI GGTCTC 2 cut(s) 200, 822
BsrDI GCAATG 2 cut(s) 40, 1038
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 5 cut(s) 455, 647, 691, 784, 803
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 4 cut(s) 173, 486, 567, 1068
BssMI GATC 3 cut(s) 99, 360, 1157
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 2 cut(s) 173, 567
Bst2UI CCWGG 5 cut(s) 245, 487, 499, 731, 1070
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 1079
BstACI GRCGYC 1 cut(s) 86
BstAFI CTTAAG 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 5 cut(s) 141, 353, 396, 465, 627
BstF5I GGATG 2 cut(s) 496, 739
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 778
BstKTI GATC 3 cut(s) 102, 363, 1160
BstMAI GTCTC 4 cut(s) 152, 200, 822, 929
BstMBI GATC 3 cut(s) 99, 360, 1157
BstMWI GCNNNNNNNGC 2 cut(s) 503, 1109
BstNI CCWGG 5 cut(s) 245, 487, 499, 731, 1070
BstNSI RCATGY 2 cut(s) 506, 926
BstSCI CCNGG 5 cut(s) 243, 485, 497, 729, 1068
BstSFI CTRYAG 1 cut(s) 341
BstSLI GKGCMC 1 cut(s) 350
BstV1I GCAGC 3 cut(s) 316, 1090, 1114
BstX2I RGATCY 2 cut(s) 360, 1157
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 2 cut(s) 360, 1157
BsuI GTATCC 2 cut(s) 632, 1083
BsuRI GGCC 3 cut(s) 348, 525, 1112
BtsCI GGATG 2 cut(s) 496, 739
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 4 cut(s) 69, 161, 462, 698
Cac8I GCNNGC 1 cut(s) 504
CciI TCATGA 1 cut(s) 768
CfoI GCGC 2 cut(s) 7, 778
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 2 cut(s) 346, 347
CsiI ACCWGGT 1 cut(s) 243
Csp6I GTAC 4 cut(s) 390, 688, 853, 1195
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 7 cut(s) 97, 481, 503, 746, 769, 923, 1015
CviQI GTAC 4 cut(s) 390, 688, 853, 1195
DdeI CTNAG 5 cut(s) 141, 353, 396, 465, 627
DpnI GATC 3 cut(s) 101, 362, 1159
DpnII GATC 3 cut(s) 99, 360, 1157
Eam1104I CTCTTC 1 cut(s) 1079
EarI CTCTTC 1 cut(s) 1079
Eco130I CCWWGG 2 cut(s) 173, 567
Eco147I AGGCCT 1 cut(s) 525
Eco24I GRGCYC 2 cut(s) 350, 1185
Eco31I GGTCTC 2 cut(s) 200, 822
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 683
EcoO109I RGGNCCY 2 cut(s) 346, 347
EcoRI GAATTC 1 cut(s) 992
EcoRII CCWGG 5 cut(s) 243, 485, 497, 729, 1068
EcoT14I CCWWGG 2 cut(s) 173, 567
EcoT22I ATGCAT 1 cut(s) 924
EcoT38I GRGCYC 2 cut(s) 350, 1185
ErhI CCWWGG 2 cut(s) 173, 567
FaeI CATG 7 cut(s) 100, 484, 506, 749, 772, 926, 1018
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FatI CATG 7 cut(s) 96, 480, 502, 745, 768, 922, 1014
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 330, 1104, 1128
FokI GGATG 2 cut(s) 503, 746
FriOI GRGCYC 2 cut(s) 350, 1185
Fsp4HI GCNGC 3 cut(s) 330, 1104, 1128
FspBI CTAG 1 cut(s) 75
GlaI GCGC 2 cut(s) 6, 777
GluI GCNGC 3 cut(s) 330, 1104, 1128
GsaI CCCAGC 1 cut(s) 968
GsuI CTGGAG 1 cut(s) 664
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 348, 525, 1112
HapII CCGG 1 cut(s) 507
HhaI GCGC 2 cut(s) 7, 778
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 7 cut(s) 100, 484, 506, 749, 772, 926, 1018
Hin6I GCGC 2 cut(s) 5, 776
HinP1I GCGC 2 cut(s) 5, 776
HinfI GANTC 2 cut(s) 822, 1151
HpaII CCGG 1 cut(s) 507
HphI GGTGA 3 cut(s) 646, 761, 1084
Hpy166II GTNNAC 3 cut(s) 123, 135, 1195
Hpy188I TCNGA 6 cut(s) 104, 356, 532, 564, 628, 1117
Hpy188III TCNNGA 8 cut(s) 22, 269, 277, 514, 683, 769, 819, 1155
Hpy8I GTNNAC 3 cut(s) 123, 135, 1195
Hpy99I CGWCG 6 cut(s) 91, 115, 118, 121, 1061, 1166
HpyAV CCTTC 5 cut(s) 422, 429, 766, 796, 881
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 6 cut(s) 343, 764, 922, 1106, 1130, 1172
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 1109
HpyF3I CTNAG 5 cut(s) 141, 353, 396, 465, 627
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 7 cut(s) 100, 484, 506, 749, 772, 926, 1018
HspAI GCGC 2 cut(s) 5, 776
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 3 cut(s) 99, 360, 1157
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 3 cut(s) 316, 1090, 1114
LweI GCATC 2 cut(s) 676, 900
MabI ACCWGGT 1 cut(s) 243
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 749, 844
MalI GATC 3 cut(s) 101, 362, 1159
MboI GATC 3 cut(s) 99, 360, 1157
MboII GAAGA 4 cut(s) 444, 598, 817, 1096
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 2 cut(s) 360, 1157
MhlI GDGCHC 3 cut(s) 95, 350, 1185
MlyI GAGTC 1 cut(s) 1160
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 6 cut(s) 250, 300, 362, 375, 1080, 1123
Mph1103I ATGCAT 1 cut(s) 924
MseI TTAA 3 cut(s) 441, 1026, 1136
MspA1I CMGCKG 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 5 cut(s) 245, 487, 499, 731, 1070
MunI CAATTG 1 cut(s) 1095
MvaI CCWGG 5 cut(s) 245, 487, 499, 731, 1070
MwoI GCNNNNNNNGC 2 cut(s) 503, 1109
NdeII GATC 3 cut(s) 99, 360, 1157
NlaIII CATG 7 cut(s) 100, 484, 506, 749, 772, 926, 1018
NlaIV GGNNCC 5 cut(s) 171, 348, 349, 728, 1159
NmuCI GTSAC 2 cut(s) 749, 844
NsiI ATGCAT 1 cut(s) 924
NspI RCATGY 2 cut(s) 506, 926
PaeI GCATGC 1 cut(s) 506
PagI TCATGA 1 cut(s) 768
PceI AGGCCT 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PfeI GAWTC 1 cut(s) 822
PkrI GCNGC 3 cut(s) 331, 1105, 1129
PleI GAGTC 1 cut(s) 1159
PpsI GAGTC 1 cut(s) 1159
Psp6I CCWGG 5 cut(s) 243, 485, 497, 729, 1068
PspFI CCCAGC 1 cut(s) 964
PspGI CCWGG 5 cut(s) 243, 485, 497, 729, 1068
PspN4I GGNNCC 5 cut(s) 171, 348, 349, 728, 1159
PspOMI GGGCCC 1 cut(s) 346
PspPI GGNCC 2 cut(s) 346, 347
PstI CTGCAG 1 cut(s) 345
PsuI RGATCY 2 cut(s) 360, 1157
RsaI GTAC 4 cut(s) 391, 689, 854, 1196
RsaNI GTAC 4 cut(s) 390, 688, 853, 1195
SaqAI TTAA 3 cut(s) 441, 1026, 1136
SatI GCNGC 3 cut(s) 330, 1104, 1128
Sau3AI GATC 3 cut(s) 99, 360, 1157
Sau96I GGNCC 2 cut(s) 346, 347
SchI GAGTC 1 cut(s) 1160
ScrFI CCNGG 5 cut(s) 245, 487, 499, 731, 1070
SduI GDGCHC 3 cut(s) 95, 350, 1185
SexAI ACCWGGT 1 cut(s) 243
SfaNI GCATC 2 cut(s) 676, 900
SfcI CTRYAG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 440, 671
SmoI CTYRAG 2 cut(s) 440, 671
SphI GCATGC 1 cut(s) 506
SseBI AGGCCT 1 cut(s) 525
SsiI CCGC 2 cut(s) 393, 1012
SspMI CTAG 1 cut(s) 75
StuI AGGCCT 1 cut(s) 525
StyD4I CCNGG 5 cut(s) 243, 485, 497, 729, 1068
StyI CCWWGG 2 cut(s) 173, 567
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 1 cut(s) 89
TaqI TCGA 5 cut(s) 89, 369, 820, 1164, 1179
TatI WGTACW 1 cut(s) 1194
TfiI GAWTC 1 cut(s) 822
Tru1I TTAA 3 cut(s) 441, 1026, 1136
Tru9I TTAA 3 cut(s) 441, 1026, 1136
TscAI CASTG 4 cut(s) 76, 168, 462, 698
TseFI GTSAC 2 cut(s) 749, 844
TseI GCWGC 3 cut(s) 329, 1103, 1127
Tsp45I GTSAC 2 cut(s) 749, 844
TspDTI ATGAA 4 cut(s) 507, 592, 785, 900
TspGWI ACGGA 3 cut(s) 296, 886, 1150
TspRI CASTG 4 cut(s) 76, 168, 462, 698
Vha464I CTTAAG 1 cut(s) 440
XapI RAATTY 6 cut(s) 25, 50, 911, 957, 992, 1078
XceI RCATGY 2 cut(s) 506, 926
XspI CTAG 1 cut(s) 75
ZraI GACGTC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.