Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013384

Physical Location & Seq

Genomic Coordinates Forward (+)

7503627 .. 7505931

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCGCTTGTGAAACCCATCACGAATTTCAGCAATGTCGTTACTCCGAAATTTGGGAATACCAGAAGCACTAGTAGCAAGTCGAGCAGCATGATCAGAATGTCGTCGTCGTCGTCGTCGTCGTCCACCAAAAAGTCCACTACTAAGAAAGCCATCAAGGAGACACTGTTGGCACCAAGGTTCTACACCACCGACTTTGATGAGATGGAGACCCTTTTCAACACTGAAATCAACAACAATTTGAACCAGGTTGAGTTTGAGGCTCTGCTTCAGGAGTTCAAGACCGACTACAACCAGACCCATTTTGTGAGGAACAAGGACTTCAAGGTGGCTGCTGATAATCTCCAGGGCCCCCTCAGACAGATCTTTGTCGAGTTCTTGGAGAGGTCTTGTACTGCTGAGTTCTCTGGCTTCCTTCTTTACAAAGAGCTTGGAAGAAGGCTTAAGAAAACCAATCCAGTGGTAGCTGAGATATTCTCTCTCATGTCCAGGGATGAAGCCAGGCATGCTGGTTTCTTGAACAAAGGCCTGTCGGATTTCAATTTGGCATTGGACTTGGGGTTTCTGACCAAGGCAAGAAAATACACATTTTTCAAACCCAAGTTCATCTTCTATGCCACTTATTTGTCTGAGAAAATTGGATACTGGAGATACATTACCATATACAGGCATCTCAAGGCAAATCCCGAGTACCAGTGCTATCCCATTTTCAAGTATTTTGAGAATTGGTGCCAGGATGAGAACAGACATGGTGACTTCTTTTCTGCACTGATGAAGGCGCAACCCCAATTCCTGAATGACTGGAAGGCAAAGTTGTGGTCTCGATTCTTCTGCTTATCGGTATATGTGACAATGTACCTAAATGATTGCCAACGCACAGCTTTCTATGAAGGCATCGGGCTAAATACAAAAGAATTTGATATGCATGTCATCATTGAGACAAATCGCACAACAGCCAGAATTTTCCCAGCCGTGCTTGATGTTGAGAACCCAGAATTCAAAAGGAAACTTGACCGCATGGTGGAGATTAACCAGAAGCTCATTGCTGTTGGGGAGAGCGACGACATTCCCCTGGTGAAAAATTTGAAGAGGATACCAATTGTTGCTGCATTGGCCTCTGAACTTCTGGCTGCATACTTAATGCCACCCATTGAGTCTGGATCCGTCGATTTTGCAGAGTTCGAGCCCCAAGTGGTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004497 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016043 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019222 GO:0019438 GO:0019866 GO:0031090 GO:0031323 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042170 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048529 GO:0050789 GO:0050794 GO:0051171 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Rubrerythrin

Protein Analysis

400

Amino Acids

46.4

Weight (kDa)

8.82

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rubrerythrin	PF02915	125 - 258	3.7e-43	Rubrerythrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56940 AT3G56940
fragaria_vesca	FvH4_1g28960 FvH4_1g28960
malus_domestica	MD00G1107700.v1.1
prunus_persica	Prupe.7G022500_v2.0.a1
pyrus_communis	pycom12g09220
rosa_chinensis	RchiOBHm_Chr3g0494361
rosa_laevigata	RLG00000022676
rosa_multiflora	Rmu_sc0031350.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391150
rosa_rugosa	Rorug03G0264700
rosa_samantha	Rh3AG315100 Rh3AG315200 Rh3BG350400 Rh3CG347100 Rh3DG349700
rosa_wichuraiana	Rw3G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	172, 729
AciI	CCGC	1 cut(s)	1015
AclWI	GGATC	2 cut(s)	1155, 1168
AcsI	RAATTY	6 cut(s)	25, 50, 914, 960, 995, 1081
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	4 cut(s)	394, 692, 857, 1199
AfiI	CCNNNNNNNGG	3 cut(s)	53, 666, 1021
AflII	CTTAAG	1 cut(s)	443
AhlI	ACTAGT	1 cut(s)	71
AjnI	CCWGG	6 cut(s)	246, 345, 488, 500, 732, 1071
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	4 cut(s)	430, 467, 881, 1039
AluI	AGCT	4 cut(s)	430, 467, 881, 1039
Alw26I	GTCTC	4 cut(s)	155, 203, 825, 932
AlwI	GGATC	2 cut(s)	1155, 1168
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	3 cut(s)	349, 526, 1113
ApaI	GGGCCC	1 cut(s)	353
ApeKI	GCWGC	4 cut(s)	87, 332, 1106, 1130
ApoI	RAATTY	6 cut(s)	25, 50, 914, 960, 995, 1081
ArsI	GACNNNNNNTTYG	2 cut(s)	803, 835
AspLEI	GCGC	2 cut(s)	7, 781
AspS9I	GGNCC	2 cut(s)	349, 350
AsuHPI	GGTGA	2 cut(s)	764, 1087
AvaI	CYCGRG	1 cut(s)	686
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	1160
BanI	GGYRCC	2 cut(s)	172, 729
BanII	GRGCYC	2 cut(s)	353, 1188
BbvI	GCAGC	4 cut(s)	99, 319, 1093, 1117
BccI	CCATC	3 cut(s)	26, 161, 199
BceAI	ACGGC	1 cut(s)	956
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BciT130I	CCWGG	6 cut(s)	248, 347, 490, 502, 734, 1073
BciVI	GTATCC	2 cut(s)	635, 1086
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	4 cut(s)	155, 203, 825, 932
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	443
BfuI	GTATCC	2 cut(s)	635, 1086
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	4 cut(s)	88, 333, 1107, 1131
BlsI	GCNGC	4 cut(s)	89, 334, 1108, 1132
Bme1390I	CCNGG	6 cut(s)	248, 347, 490, 502, 734, 1073
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	349, 350
BmiI	GGNNCC	5 cut(s)	174, 351, 352, 731, 1162
BmrFI	CCNGG	6 cut(s)	248, 347, 490, 502, 734, 1073
BmsI	GCATC	2 cut(s)	679, 903
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
BpmI	CTGGAG	2 cut(s)	329, 667
BpuEI	CTTGAG	1 cut(s)	659
BsaI	GGTCTC	2 cut(s)	203, 825
BsaJI	CCNNGG	5 cut(s)	176, 346, 489, 570, 1071
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 666, 1021
Bse1I	ACTGG	4 cut(s)	458, 650, 694, 806
Bse3DI	GCAATG	2 cut(s)	40, 1041
BseBI	CCWGG	6 cut(s)	248, 347, 490, 502, 734, 1073
BseDI	CCNNGG	5 cut(s)	176, 346, 489, 570, 1071
BseGI	GGATG	2 cut(s)	499, 742
BseLI	CCNNNNNNNGG	3 cut(s)	53, 666, 1021
BseMI	GCAATG	2 cut(s)	40, 1041
BseMII	CTCAG	4 cut(s)	370, 390, 459, 621
BseNI	ACTGG	4 cut(s)	458, 650, 694, 806
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	4 cut(s)	99, 319, 1093, 1117
BseYI	CCCAGC	1 cut(s)	967
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	3 cut(s)	351, 528, 1115
BshNI	GGYRCC	2 cut(s)	172, 729
BsiHKCI	CYCGRG	1 cut(s)	686
BslI	CCNNNNNNNGG	3 cut(s)	53, 666, 1021
BsmAI	GTCTC	4 cut(s)	155, 203, 825, 932
BsnI	GGCC	3 cut(s)	351, 528, 1115
Bso31I	GGTCTC	2 cut(s)	203, 825
BsoBI	CYCGRG	1 cut(s)	686
Bsp120I	GGGCCC	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	353, 1188
Bsp143I	GATC	3 cut(s)	93, 363, 1160
BspACI	CCGC	1 cut(s)	1015
BspANI	GGCC	3 cut(s)	351, 528, 1115
BspCNI	CTCAG	4 cut(s)	369, 391, 460, 622
BspLI	GGNNCC	5 cut(s)	174, 351, 352, 731, 1162
BspPI	GGATC	2 cut(s)	1155, 1168
BspT107I	GGYRCC	2 cut(s)	172, 729
BspTI	CTTAAG	1 cut(s)	443
BspTNI	GGTCTC	2 cut(s)	203, 825
BsrDI	GCAATG	2 cut(s)	40, 1041
BsrI	ACTGG	4 cut(s)	458, 650, 694, 806
BssECI	CCNNGG	5 cut(s)	176, 346, 489, 570, 1071
BssMI	GATC	3 cut(s)	93, 363, 1160
BssT1I	CCWWGG	2 cut(s)	176, 570
Bst2UI	CCWGG	6 cut(s)	248, 347, 490, 502, 734, 1073
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	1082
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	5 cut(s)	144, 356, 399, 468, 630
BstF5I	GGATG	2 cut(s)	499, 742
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 781
BstKTI	GATC	3 cut(s)	96, 366, 1163
BstMAI	GTCTC	4 cut(s)	155, 203, 825, 932
BstMBI	GATC	3 cut(s)	93, 363, 1160
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 84, 506, 1112
BstNI	CCWGG	6 cut(s)	248, 347, 490, 502, 734, 1073
BstNSI	RCATGY	2 cut(s)	509, 929
BstSCI	CCNGG	6 cut(s)	246, 345, 488, 500, 732, 1071
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	4 cut(s)	99, 319, 1093, 1117
BstX2I	RGATCY	2 cut(s)	363, 1160
BstXI	CCANNNNNNTGG	1 cut(s)	460
BstYI	RGATCY	2 cut(s)	363, 1160
BsuI	GTATCC	2 cut(s)	635, 1086
BsuRI	GGCC	3 cut(s)	351, 528, 1115
BtsCI	GGATG	2 cut(s)	499, 742
BtsIMutI	CAGTG	5 cut(s)	164, 222, 465, 701, 767
Cac8I	GCNNGC	1 cut(s)	507
CfoI	GCGC	2 cut(s)	7, 781
Cfr13I	GGNCC	2 cut(s)	349, 350
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	4 cut(s)	393, 691, 856, 1198
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	6 cut(s)	91, 484, 506, 749, 926, 1018
CviQI	GTAC	4 cut(s)	393, 691, 856, 1198
DdeI	CTNAG	5 cut(s)	144, 356, 399, 468, 630
DpnI	GATC	3 cut(s)	95, 365, 1162
DpnII	GATC	3 cut(s)	93, 363, 1160
Eam1104I	CTCTTC	1 cut(s)	1082
EarI	CTCTTC	1 cut(s)	1082
Eco130I	CCWWGG	2 cut(s)	176, 570
Eco147I	AGGCCT	1 cut(s)	528
Eco24I	GRGCYC	2 cut(s)	353, 1188
Eco31I	GGTCTC	2 cut(s)	203, 825
Eco57I	CTGAAG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	686
EcoO109I	RGGNCCY	2 cut(s)	349, 350
EcoRI	GAATTC	1 cut(s)	995
EcoRII	CCWGG	6 cut(s)	246, 345, 488, 500, 732, 1071
EcoT14I	CCWWGG	2 cut(s)	176, 570
EcoT22I	ATGCAT	1 cut(s)	927
EcoT38I	GRGCYC	2 cut(s)	353, 1188
ErhI	CCWWGG	2 cut(s)	176, 570
FaeI	CATG	6 cut(s)	94, 487, 509, 752, 929, 1021
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	6 cut(s)	90, 483, 505, 748, 925, 1017
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	88, 333, 1107, 1131
FokI	GGATG	2 cut(s)	506, 749
FriOI	GRGCYC	2 cut(s)	353, 1188
Fsp4HI	GCNGC	4 cut(s)	88, 333, 1107, 1131
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	2 cut(s)	6, 780
GluI	GCNGC	4 cut(s)	88, 333, 1107, 1131
GsaI	CCCAGC	1 cut(s)	971
GsuI	CTGGAG	2 cut(s)	329, 667
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	351, 528, 1115
HhaI	GCGC	2 cut(s)	7, 781
Hin1II	CATG	6 cut(s)	94, 487, 509, 752, 929, 1021
Hin6I	GCGC	2 cut(s)	5, 779
HinP1I	GCGC	2 cut(s)	5, 779
HinfI	GANTC	2 cut(s)	825, 1154
HphI	GGTGA	2 cut(s)	764, 1087
Hpy166II	GTNNAC	3 cut(s)	126, 138, 1198
Hpy188I	TCNGA	7 cut(s)	48, 98, 359, 535, 567, 631, 1120
Hpy188III	TCNNGA	8 cut(s)	22, 272, 280, 517, 686, 793, 822, 1158
Hpy8I	GTNNAC	3 cut(s)	126, 138, 1198
Hpy99I	CGWCG	8 cut(s)	109, 112, 115, 118, 121, 124, 1064, 1169
HpyAV	CCTTC	5 cut(s)	425, 432, 769, 799, 884
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	5 cut(s)	767, 925, 1109, 1133, 1175
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 84, 506, 1112
HpyF3I	CTNAG	5 cut(s)	144, 356, 399, 468, 630
Hsp92II	CATG	6 cut(s)	94, 487, 509, 752, 929, 1021
HspAI	GCGC	2 cut(s)	5, 779
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	93, 363, 1160
Lsp1109I	GCAGC	4 cut(s)	99, 319, 1093, 1117
LweI	GCATC	2 cut(s)	679, 903
MabI	ACCWGGT	1 cut(s)	246
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	40, 752, 847
MalI	GATC	3 cut(s)	95, 365, 1162
MboI	GATC	3 cut(s)	93, 363, 1160
MboII	GAAGA	4 cut(s)	447, 601, 820, 1099
MfeI	CAATTG	1 cut(s)	1098
MflI	RGATCY	2 cut(s)	363, 1160
MhlI	GDGCHC	2 cut(s)	353, 1188
MlyI	GAGTC	1 cut(s)	1163
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	6 cut(s)	253, 303, 365, 378, 1083, 1126
Mph1103I	ATGCAT	1 cut(s)	927
MseI	TTAA	3 cut(s)	444, 1029, 1139
MspCI	CTTAAG	1 cut(s)	443
MspR9I	CCNGG	6 cut(s)	248, 347, 490, 502, 734, 1073
MunI	CAATTG	1 cut(s)	1098
MvaI	CCWGG	6 cut(s)	248, 347, 490, 502, 734, 1073
MwoI	GCNNNNNNNGC	4 cut(s)	75, 84, 506, 1112
NdeII	GATC	3 cut(s)	93, 363, 1160
NlaIII	CATG	6 cut(s)	94, 487, 509, 752, 929, 1021
NlaIV	GGNNCC	5 cut(s)	174, 351, 352, 731, 1162
NmuCI	GTSAC	2 cut(s)	752, 847
NsiI	ATGCAT	1 cut(s)	927
NspI	RCATGY	2 cut(s)	509, 929
PaeI	GCATGC	1 cut(s)	509
PceI	AGGCCT	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	4 cut(s)	110, 113, 116, 119
PfeI	GAWTC	1 cut(s)	825
PkrI	GCNGC	4 cut(s)	89, 334, 1108, 1132
PleI	GAGTC	1 cut(s)	1162
PpsI	GAGTC	1 cut(s)	1162
Psp6I	CCWGG	6 cut(s)	246, 345, 488, 500, 732, 1071
PspFI	CCCAGC	1 cut(s)	967
PspGI	CCWGG	6 cut(s)	246, 345, 488, 500, 732, 1071
PspN4I	GGNNCC	5 cut(s)	174, 351, 352, 731, 1162
PspOMI	GGGCCC	1 cut(s)	349
PspPI	GGNCC	2 cut(s)	349, 350
PsuI	RGATCY	2 cut(s)	363, 1160
RsaI	GTAC	4 cut(s)	394, 692, 857, 1199
RsaNI	GTAC	4 cut(s)	393, 691, 856, 1198
SaqAI	TTAA	3 cut(s)	444, 1029, 1139
SatI	GCNGC	4 cut(s)	88, 333, 1107, 1131
Sau3AI	GATC	3 cut(s)	93, 363, 1160
Sau96I	GGNCC	2 cut(s)	349, 350
SchI	GAGTC	1 cut(s)	1163
ScrFI	CCNGG	6 cut(s)	248, 347, 490, 502, 734, 1073
SduI	GDGCHC	2 cut(s)	353, 1188
SetI	ASST	9 cut(s)	182, 252, 330, 389, 432, 469, 861, 883, 1041
SexAI	ACCWGGT	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	679, 903
SmlI	CTYRAG	2 cut(s)	443, 674
SmoI	CTYRAG	2 cut(s)	443, 674
SpeI	ACTAGT	1 cut(s)	71
SphI	GCATGC	1 cut(s)	509
SseBI	AGGCCT	1 cut(s)	528
SsiI	CCGC	1 cut(s)	1015
SspMI	CTAG	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	528
StyD4I	CCNGG	6 cut(s)	246, 345, 488, 500, 732, 1071
StyI	CCWWGG	2 cut(s)	176, 570
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	5 cut(s)	83, 372, 823, 1167, 1182
TaqII	GACCGA	1 cut(s)	299
TatI	WGTACW	2 cut(s)	392, 1197
TfiI	GAWTC	1 cut(s)	825
Tru1I	TTAA	3 cut(s)	444, 1029, 1139
Tru9I	TTAA	3 cut(s)	444, 1029, 1139
TscAI	CASTG	5 cut(s)	171, 229, 465, 701, 774
TseFI	GTSAC	2 cut(s)	752, 847
TseI	GCWGC	4 cut(s)	87, 332, 1106, 1130
Tsp45I	GTSAC	2 cut(s)	752, 847
TspDTI	ATGAA	4 cut(s)	510, 595, 788, 903
TspGWI	ACGGA	1 cut(s)	1153
TspRI	CASTG	5 cut(s)	171, 229, 465, 701, 774
Vha464I	CTTAAG	1 cut(s)	443
XapI	RAATTY	6 cut(s)	25, 50, 914, 960, 995, 1081
XceI	RCATGY	2 cut(s)	509, 929
XspI	CTAG	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.