Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013384

Physical Location & Seq

Genomic Coordinates Reverse (-)

22534778 .. 22535015

Gene Structure 238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1107700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGTGGAGATTAACCAGAAGCTGATTGCTGTCGGGGAGACTGACGACATTCCCTTGGTGAAAAACTTGAAGAGGATACCGATGGTTGCTGCCTTGGCCTCTGAGCTTCTCGCCGCCTACTTAATGCCTCCCATTGAGTCCGGCTCCGTTGATTTTGCAGACTTTGAAACCCAGCTAGTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004497 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016043 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019222 GO:0019438 GO:0019866 GO:0031090 GO:0031323 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042170 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048529 GO:0050789 GO:0050794 GO:0051171 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Rubrerythrin

Protein Analysis

62

Amino Acids

6.69

Weight (kDa)

4.21

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56940 AT3G56940
fragaria_vesca	FvH4_1g28960 FvH4_1g28960
malus_domestica	MD00G1107700.v1.1
prunus_persica	Prupe.7G022500_v2.0.a1
pyrus_communis	pycom12g09220
rosa_chinensis	RchiOBHm_Chr3g0494361
rosa_laevigata	RLG00000022676
rosa_multiflora	Rmu_sc0031350.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391150
rosa_rugosa	Rorug03G0264700
rosa_samantha	Rh3AG315100 Rh3AG315200 Rh3BG350400 Rh3CG347100 Rh3DG349700
rosa_wichuraiana	Rw3G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	70, 167
AluBI	AGCT	3 cut(s)	22, 106, 175
AluI	AGCT	3 cut(s)	22, 106, 175
Alw26I	GTCTC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	69
BisI	GCNGC	2 cut(s)	90, 114
BlsI	GCNGC	2 cut(s)	91, 115
BmiI	GGNNCC	1 cut(s)	145
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BsaJI	CCNNGG	2 cut(s)	54, 93
BseDI	CCNNGG	2 cut(s)	54, 93
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	98
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	54, 93
BssT1I	CCWWGG	2 cut(s)	54, 93
Bst6I	CTCTTC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	98
CaiI	CAGNNNCTG	1 cut(s)	22
CviJI	RGCY	5 cut(s)	22, 98, 106, 144, 175
CviKI_1	RGCY	5 cut(s)	22, 98, 106, 144, 175
DdeI	CTNAG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	54, 93
EcoT14I	CCWWGG	2 cut(s)	54, 93
ErhI	CCWWGG	2 cut(s)	54, 93
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	90, 114
Fsp4HI	GCNGC	2 cut(s)	90, 114
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	2 cut(s)	90, 114
GsaI	CCCAGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	141
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	2 cut(s)	29, 154
Lsp1109I	GCAGC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	176
MboII	GAAGA	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	66, 109, 138
MseI	TTAA	2 cut(s)	12, 122
MspI	CCGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	91, 115
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	12, 122
SatI	GCNGC	2 cut(s)	90, 114
SchI	GAGTC	1 cut(s)	146
SetI	ASST	3 cut(s)	24, 108, 177
SgeI	CNNG	7 cut(s)	28, 46, 67, 79, 106, 122, 153
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	176
StyI	CCWWGG	2 cut(s)	54, 93
TauI	GCSGC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	12, 122
Tru9I	TTAA	2 cut(s)	12, 122
TseI	GCWGC	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.