Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013384

Physical Location & Seq

Genomic Coordinates Reverse (-)

42789233 .. 42789757

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG315200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGCTTGTGAAACCCATCACGAATTTCGGCAATGTCGTTACTCCCAAATTTGGGAATACGAGAAGCACTAGTAGCAAGACGTCGAGCACCATGATCAGAATGTCGTCGTCCACCAAAAAGTCCAGTACTAAGAAAGCCATCAAGGAGACACTGTTGGCACCAAGGTTCTACACCACCGACTTTGATGAGATGGAGACCCTTTTCAACACCGAAATCAACAACAATTTGAACCAGGTTGAGTTTGAGGCTCTGCTTCAGGAGTTCAAGACCGACTACAACCAGACCCATTTTGTGAGGAACAAGGAGTTCAAGGTGGCTGCTGATAATCTCCAGGGCCCCCTCAGACAGATCTTTGTCGAGTTCTTGGAGAGGTCTTGTACTGCTGAGTTCTCTGGCTTCCTTCTTTACAAAGAGCTTGGAAGAAGGCTTAAGGTCTGGGATTCAATTCTTTCTCTCTTTTCTGCTCTATCTATTCTCTGTTTGACTACTGAATCTAGCTTTAATTCTCCTCCGTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004497 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016043 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019222 GO:0019438 GO:0019866 GO:0031090 GO:0031323 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042170 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048529 GO:0050789 GO:0050794 GO:0051171 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Rubrerythrin

Protein Analysis

174

Amino Acids

19.74

Weight (kDa)

8.88

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56940 AT3G56940
fragaria_vesca	FvH4_1g28960 FvH4_1g28960
malus_domestica	MD00G1107700.v1.1
prunus_persica	Prupe.7G022500_v2.0.a1
pyrus_communis	pycom12g09220
rosa_chinensis	RchiOBHm_Chr3g0494361
rosa_laevigata	RLG00000022676
rosa_multiflora	Rmu_sc0031350.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391150
rosa_rugosa	Rorug03G0264700
rosa_samantha	Rh3AG315100 Rh3AG315200 Rh3BG350400 Rh3CG347100 Rh3DG349700
rosa_wichuraiana	Rw3G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	25, 50
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	2 cut(s)	130, 382
AfiI	CCNNNNNNNGG	3 cut(s)	53, 54, 518
AflII	CTTAAG	1 cut(s)	431
AgsI	TTSAA	5 cut(s)	208, 232, 268, 313, 447
AhlI	ACTAGT	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	234, 333
AluBI	AGCT	2 cut(s)	418, 501
AluI	AGCT	2 cut(s)	418, 501
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	143, 191
AoxI	GGCC	1 cut(s)	337
ApaI	GGGCCC	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	25, 50
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	337, 338
BaeGI	GKGCMC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	3 cut(s)	26, 149, 187
BciT130I	CCWGG	2 cut(s)	236, 335
BclI	TGATCA	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	143, 191
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	2 cut(s)	72, 498
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	431
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmcAI	AGTACT	1 cut(s)	130
Bme1390I	CCNGG	2 cut(s)	236, 335
BmgT120I	GGNCC	2 cut(s)	337, 338
BmiI	GGNNCC	3 cut(s)	162, 339, 340
BmrFI	CCNGG	2 cut(s)	236, 335
BpmI	CTGGAG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	164, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 54, 518
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	236, 335
BseDI	CCNNGG	2 cut(s)	164, 334
BseLI	CCNNNNNNNGG	3 cut(s)	53, 54, 518
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	358, 378
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	501
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	307
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	92
BslI	CCNNNNNNNGG	3 cut(s)	53, 54, 518
BsmAI	GTCTC	2 cut(s)	143, 191
BsnI	GGCC	1 cut(s)	339
Bso31I	GGTCTC	1 cut(s)	191
Bsp120I	GGGCCC	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	92, 341
Bsp143I	GATC	2 cut(s)	96, 351
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	2 cut(s)	357, 379
BspLI	GGNNCC	3 cut(s)	162, 339, 340
BspT107I	GGYRCC	1 cut(s)	160
BspTI	CTTAAG	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	164, 334
BssMI	GATC	2 cut(s)	96, 351
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	236, 335
Bst4CI	ACNGT	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	431
BstDEI	CTNAG	3 cut(s)	132, 344, 387
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	99, 354
BstMAI	GTCTC	2 cut(s)	143, 191
BstMBI	GATC	2 cut(s)	96, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	2 cut(s)	236, 335
BstSCI	CCNGG	2 cut(s)	234, 333
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	152
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	337, 338
CsiI	ACCWGGT	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	129, 381
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	8 cut(s)	140, 251, 320, 339, 399, 418, 430, 501
CviKI_1	RGCY	8 cut(s)	140, 251, 320, 339, 399, 418, 430, 501
CviQI	GTAC	2 cut(s)	129, 381
DdeI	CTNAG	3 cut(s)	132, 344, 387
DpnI	GATC	2 cut(s)	98, 353
DpnII	GATC	2 cut(s)	96, 351
Eco130I	CCWWGG	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	341
Eco31I	GGTCTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	337, 338
EcoRII	CCWGG	2 cut(s)	234, 333
EcoT14I	CCWWGG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	97
FaiI	YATR	1 cut(s)	95
FatI	CATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	72, 498
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	443, 494
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	101, 347
Hpy188III	TCNNGA	3 cut(s)	22, 260, 268
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	2 cut(s)	88, 112
HpyAV	CCTTC	2 cut(s)	413, 420
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	3 cut(s)	132, 344, 387
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	96, 351
Lsp1109I	GCAGC	1 cut(s)	307
MabI	ACCWGGT	1 cut(s)	234
MaeI	CTAG	2 cut(s)	72, 498
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	2 cut(s)	98, 353
MboI	GATC	2 cut(s)	96, 351
MboII	GAAGA	1 cut(s)	435
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	2 cut(s)	92, 341
MluCI	AATT	5 cut(s)	25, 50, 226, 447, 505
MnlI	CCTC	5 cut(s)	241, 291, 353, 366, 522
MseI	TTAA	3 cut(s)	432, 504, 523
MspCI	CTTAAG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	236, 335
MvaI	CCWGG	2 cut(s)	236, 335
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	2 cut(s)	96, 351
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	3 cut(s)	162, 339, 340
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	443, 494
PkrI	GCNGC	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	234, 333
PspGI	CCWGG	2 cut(s)	234, 333
PspN4I	GGNNCC	3 cut(s)	162, 339, 340
PspOMI	GGGCCC	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	337, 338
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	2 cut(s)	130, 382
RsaNI	GTAC	2 cut(s)	129, 381
SaqAI	TTAA	3 cut(s)	432, 504, 523
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	2 cut(s)	96, 351
Sau96I	GGNCC	2 cut(s)	337, 338
ScaI	AGTACT	1 cut(s)	130
ScrFI	CCNGG	2 cut(s)	236, 335
SduI	GDGCHC	2 cut(s)	92, 341
SetI	ASST	8 cut(s)	86, 170, 240, 318, 377, 420, 438, 503
SexAI	ACCWGGT	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	5 cut(s)	25, 50, 226, 447, 505
SspMI	CTAG	2 cut(s)	72, 498
StyD4I	CCNGG	2 cut(s)	234, 333
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	86, 360
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	5 cut(s)	25, 50, 226, 447, 505
TatI	WGTACW	2 cut(s)	128, 380
TfiI	GAWTC	2 cut(s)	443, 494
Tru1I	TTAA	3 cut(s)	432, 504, 523
Tru9I	TTAA	3 cut(s)	432, 504, 523
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	1 cut(s)	159
Vha464I	CTTAAG	1 cut(s)	431
XapI	RAATTY	2 cut(s)	25, 50
XspI	CTAG	2 cut(s)	72, 498
ZraI	GACGTC	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.