Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013384

Physical Location & Seq

Genomic Coordinates Reverse (-)

42787766 .. 42789225

Gene Structure 1460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG315100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTGCAGAAAACCAATCCAGTGGTAGCTGAGATATTCTCTCTCATGTCCAGGGATGAAGCCAGGCATGCCGGTTTCTTGAACAAAGGCCTGTCGGATTTCAATTTGGCATTGGACTTGGGGTTTCTGACCAAGGCAAGAAAATACACATTTTTCAAACCAAAGTTCATCTTCTATGCCACTTATTTGTCTGAGAAAATTGGATACTGGAGATACATCACCATATACAGGCATCTCAAGGCAAATCCCGAGTACCAGTGCTATCCCATTTTCAAGTATTTTGAGAATTGGTGCCAGGATGAGAACAGACATGGTGACTTCTTTTCTGCACTCATGAAGGCGCAACCCCAGTTCCTAAATGACTGGAAGGCAAAGTTGTGGTCTCGATTCTTCTGCTTATCGGTATATGTGACAATGTACCTAAATGATTGCCAACGGACAGCTTTCTATGAAGGCATCGGGCTAAATACAAAAGAATTTGATATGCATGTCATCATTGAGACAAATCGCACAACAGCCAGAATTTTCCCAGCCGTGCTTGATGTTGAGAACCCAGAATTCAAAAGGAAACTTGACCGCATGGTGGAGATTAACCAGAAGCTCATTGCTGTTGGGGAGAGCGACGACATTCCCCTGGTGAAAAATTTGAAGAGGATACCAATTGTTGCTGCATTGGCCTCTGAACTTCTGGCTGCGTACTTAATGCCACCCATTGAGTCTGGATCCGTCGATTTTGCAGAGTTCGAGCCCCAAGTGGTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004497 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016043 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019222 GO:0019438 GO:0019866 GO:0031090 GO:0031323 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042170 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048529 GO:0050789 GO:0050794 GO:0051171 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0071840 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Rubrerythrin

Protein Analysis

254

Amino Acids

29.75

Weight (kDa)

7.62

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rubrerythrin	PF02915	3 - 112	1.3e-33	Rubrerythrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56940 AT3G56940
fragaria_vesca	FvH4_1g28960 FvH4_1g28960
malus_domestica	MD00G1107700.v1.1
prunus_persica	Prupe.7G022500_v2.0.a1
pyrus_communis	pycom12g09220
rosa_chinensis	RchiOBHm_Chr3g0494361
rosa_laevigata	RLG00000022676
rosa_multiflora	Rmu_sc0031350.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391150
rosa_rugosa	Rorug03G0264700
rosa_samantha	Rh3AG315100 Rh3AG315200 Rh3BG350400 Rh3CG347100 Rh3DG349700
rosa_wichuraiana	Rw3G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	291
AciI	CCGC	1 cut(s)	577
AclWI	GGATC	2 cut(s)	717, 730
AcsI	RAATTY	4 cut(s)	476, 522, 557, 643
AfaI	GTAC	4 cut(s)	254, 419, 698, 761
AfiI	CCNNNNNNNGG	2 cut(s)	228, 583
AgsI	TTSAA	6 cut(s)	82, 103, 157, 274, 562, 649
AjnI	CCWGG	4 cut(s)	50, 62, 294, 633
AluBI	AGCT	3 cut(s)	29, 443, 601
AluI	AGCT	3 cut(s)	29, 443, 601
Alw26I	GTCTC	2 cut(s)	387, 494
AlwI	GGATC	2 cut(s)	717, 730
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	88, 675
ApeKI	GCWGC	2 cut(s)	668, 692
ApoI	RAATTY	4 cut(s)	476, 522, 557, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspLEI	GCGC	1 cut(s)	343
AsuHPI	GGTGA	3 cut(s)	211, 326, 649
AvaI	CYCGRG	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	722
BanI	GGYRCC	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	750
BbvI	GCAGC	2 cut(s)	655, 679
BceAI	ACGGC	1 cut(s)	518
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BciT130I	CCWGG	4 cut(s)	52, 64, 296, 635
BciVI	GTATCC	2 cut(s)	197, 648
BcoDI	GTCTC	2 cut(s)	387, 494
BfuI	GTATCC	2 cut(s)	197, 648
BisI	GCNGC	2 cut(s)	669, 693
BlsI	GCNGC	2 cut(s)	670, 694
Bme1390I	CCNGG	4 cut(s)	52, 64, 296, 635
BmeT110I	CYCGRG	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	293, 724
BmrFI	CCNGG	4 cut(s)	52, 64, 296, 635
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	2 cut(s)	241, 465
BmuI	ACTGGG	1 cut(s)	343
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpmI	CTGGAG	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	387
BsaJI	CCNNGG	3 cut(s)	51, 132, 633
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 583
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	5 cut(s)	20, 212, 256, 349, 368
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	4 cut(s)	52, 64, 296, 635
BseDI	CCNNGG	3 cut(s)	51, 132, 633
BseGI	GGATG	2 cut(s)	61, 304
BseLI	CCNNNNNNNGG	2 cut(s)	228, 583
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	21, 183
BseNI	ACTGG	5 cut(s)	20, 212, 256, 349, 368
BseXI	GCAGC	2 cut(s)	655, 679
BseYI	CCCAGC	1 cut(s)	529
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	90, 677
BshNI	GGYRCC	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	228, 583
BsmAI	GTCTC	2 cut(s)	387, 494
BsnI	GGCC	2 cut(s)	90, 677
Bso31I	GGTCTC	1 cut(s)	387
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	1 cut(s)	722
BspACI	CCGC	1 cut(s)	577
BspANI	GGCC	2 cut(s)	90, 677
BspCNI	CTCAG	2 cut(s)	22, 184
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	293, 724
BspPI	GGATC	2 cut(s)	717, 730
BspT107I	GGYRCC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	5 cut(s)	20, 212, 256, 349, 368
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	51, 132, 633
BssMI	GATC	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	4 cut(s)	52, 64, 296, 635
Bst6I	CTCTTC	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	30, 192
BstF5I	GGATG	2 cut(s)	61, 304
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	725
BstMAI	GTCTC	2 cut(s)	387, 494
BstMBI	GATC	1 cut(s)	722
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 674
BstNI	CCWGG	4 cut(s)	52, 64, 296, 635
BstNSI	RCATGY	2 cut(s)	71, 491
BstSCI	CCNGG	4 cut(s)	50, 62, 294, 633
BstV1I	GCAGC	2 cut(s)	655, 679
BstX2I	RGATCY	1 cut(s)	722
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	722
BsuI	GTATCC	2 cut(s)	197, 648
BsuRI	GGCC	2 cut(s)	90, 677
BtsCI	GGATG	2 cut(s)	61, 304
BtsIMutI	CAGTG	2 cut(s)	27, 263
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	71
Csp6I	GTAC	4 cut(s)	253, 418, 697, 760
CviAII	CATG	6 cut(s)	46, 68, 311, 334, 488, 580
CviQI	GTAC	4 cut(s)	253, 418, 697, 760
DdeI	CTNAG	2 cut(s)	30, 192
DpnI	GATC	1 cut(s)	724
DpnII	GATC	1 cut(s)	722
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Eco130I	CCWWGG	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	750
Eco31I	GGTCTC	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	4 cut(s)	50, 62, 294, 633
EcoT14I	CCWWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	6 cut(s)	49, 71, 314, 337, 491, 583
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	6 cut(s)	45, 67, 310, 333, 487, 579
Fnu4HI	GCNGC	2 cut(s)	669, 693
FokI	GGATG	2 cut(s)	68, 311
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	2 cut(s)	669, 693
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	669, 693
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	90, 677
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	6 cut(s)	49, 71, 314, 337, 491, 583
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	2 cut(s)	387, 716
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	211, 326, 649
Hpy166II	GTNNAC	1 cut(s)	760
Hpy188I	TCNGA	4 cut(s)	97, 129, 193, 682
Hpy188III	TCNNGA	5 cut(s)	79, 248, 334, 384, 720
Hpy8I	GTNNAC	1 cut(s)	760
Hpy99I	CGWCG	2 cut(s)	626, 731
HpyAV	CCTTC	3 cut(s)	331, 361, 446
HpyCH4V	TGCA	5 cut(s)	7, 329, 487, 671, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 674
HpyF3I	CTNAG	2 cut(s)	30, 192
Hsp92II	CATG	6 cut(s)	49, 71, 314, 337, 491, 583
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	722
Lsp1109I	GCAGC	2 cut(s)	655, 679
LweI	GCATC	2 cut(s)	241, 465
MaeIII	GTNAC	2 cut(s)	314, 409
MalI	GATC	1 cut(s)	724
MboI	GATC	1 cut(s)	722
MboII	GAAGA	3 cut(s)	163, 382, 661
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	1 cut(s)	722
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	8 cut(s)	103, 198, 286, 476, 522, 557, 643, 660
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	645, 688
Mph1103I	ATGCAT	1 cut(s)	489
MseI	TTAA	2 cut(s)	591, 701
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	4 cut(s)	52, 64, 296, 635
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	4 cut(s)	52, 64, 296, 635
MwoI	GCNNNNNNNGC	2 cut(s)	68, 674
NdeII	GATC	1 cut(s)	722
NlaIII	CATG	6 cut(s)	49, 71, 314, 337, 491, 583
NlaIV	GGNNCC	2 cut(s)	293, 724
NmuCI	GTSAC	2 cut(s)	314, 409
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	2 cut(s)	71, 491
PaeI	GCATGC	1 cut(s)	71
PagI	TCATGA	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	670, 694
PleI	GAGTC	1 cut(s)	724
PpsI	GAGTC	1 cut(s)	724
Psp6I	CCWGG	4 cut(s)	50, 62, 294, 633
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	4 cut(s)	50, 62, 294, 633
PspN4I	GGNNCC	2 cut(s)	293, 724
PsuI	RGATCY	1 cut(s)	722
RsaI	GTAC	4 cut(s)	254, 419, 698, 761
RsaNI	GTAC	4 cut(s)	253, 418, 697, 760
SaqAI	TTAA	2 cut(s)	591, 701
SatI	GCNGC	2 cut(s)	669, 693
Sau3AI	GATC	1 cut(s)	722
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	4 cut(s)	52, 64, 296, 635
SduI	GDGCHC	1 cut(s)	750
SetI	ASST	4 cut(s)	31, 423, 445, 603
SfaNI	GCATC	2 cut(s)	241, 465
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	8 cut(s)	103, 198, 286, 476, 522, 557, 643, 660
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	577
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	4 cut(s)	50, 62, 294, 633
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	3 cut(s)	385, 729, 744
TasI	AATT	8 cut(s)	103, 198, 286, 476, 522, 557, 643, 660
TatI	WGTACW	1 cut(s)	759
TfiI	GAWTC	1 cut(s)	387
Tru1I	TTAA	2 cut(s)	591, 701
Tru9I	TTAA	2 cut(s)	591, 701
TscAI	CASTG	2 cut(s)	27, 263
TseFI	GTSAC	2 cut(s)	314, 409
TseI	GCWGC	2 cut(s)	668, 692
Tsp45I	GTSAC	2 cut(s)	314, 409
TspDTI	ATGAA	4 cut(s)	72, 157, 350, 465
TspGWI	ACGGA	2 cut(s)	451, 715
TspRI	CASTG	2 cut(s)	27, 263
XapI	RAATTY	4 cut(s)	476, 522, 557, 643
XceI	RCATGY	2 cut(s)	71, 491
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.