FvH4_1g29890

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
23598843 .. 23605246
6404 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29890.t1

Sequence Viewer

Length: 1557 bp
ATGGGGCCAGACTCTGTAACTATTCTCAGTATTCTTCCTTCTTGTGCACATTTGAAGCTCTTGCATGTGGGAAGAAAGATCCATGGGTATGTTCTTCGACATCCTATGCTATATGAGTCTACAGCAGTTGGTAATGCCATTGTTAGTCTCTATGTGAAATGTGATAAAATTGAAGATGCTTTAGAGACATTTTTGATGATGTCTAGGAGGGATTTGATATCGTGGAATACCATGCTAGTTGCCTTTTCAGGTATTTGCTATTCTACCAAGTTTCTTAACTTATTAAACGAGCTGCTAAGGGAAGGAATGATACCGGACCATATAACCATCTTGACCATAATTCAGTTTTGTTCTGGAGTATGTAGAGTAGAAAAGGTTAAAGAAACACATAGCTATGCAATTAAGGCTGGGTTTTTGTTGGATGATATTGGAAATGCGATACTTGATGCATATGCCAAGTGTGGTAACATGGACTATGCATTCAAGATCTTTCAGAGTTTATCACAGAAAAAAAATTTAGCGACAAGCAATTCAATGATATCAGCTTATGTGAATTGTGGGTCTCATGATGATGCGCAAATGATACTTAACAGCATGTCTGAAACTGATCTCATCTCTTGGAATCTAATGGTCCAAGCTTATGCTGAAAATGGTTGTCCTGCTGAAGCTATTAATCTGTTTAATGAGTTACAAGCTCAAGGAATGAAGCCAGATGCAATGACCATTATGAGCCTCCTTCCTGTATCTGCTCAAATATCTTCAGTCCACTTGCTGAGGCAGTGTCATGGATATGTGGTGAGAGCTTTTCTTCCTGATGTTTACTTGACAGGAGCTCTGTTAGATATGTATGCGAAATGTGGTGCCATATTATATGCTTATAAGCTGTTCCAGTCCAGCCTGCATAAGGATCTGGTTATGTTTACAGCCATGATTGGTGGGTTTGCCATGCATGGTATGGGTGAGGAAGCACTCCGGATTTTCTCTCATATGCTTGAGTTGGGTATAAAGCCTGATAATGTTATCATTACTGCTGTATTATCTGCTTGCAGTCATGCTGGCCTTGTGAACGAAGGGCTGAAGATCTTTCATACAATAGAAGAGGTTTATGGGGTCAAACCTACCATGGAACAGTATGCTTGTGTGGTGGATCTCCTTGGCAGAGGTGGGCGCATTGATGATGCATTTTCTTTTGTGTCCAAGATGCCTATTGAAGCTAATGCTAACATATGGGGGACATTACTGGGTGCTTGTAGAACTCATCATATGGTGGACTTGGGTCGTGTTGTGGCAGGTCATCTGTTTGACATTGAAGCTGATAATATTGGGAACTACGTGGTGATGTCAAACTTATATGCATCAGAAGCTAGATGGGATGGGGTCATGGAGGTAAGGCAGCTTATGAGGATTAGAGACTTAAAAAAGCCAGCTGGATGCAGTTGGATAGAAGTGGAGAGGAGGACAAACCGTTTTATAGCTGGAGACTTGTCCCATCCACAGAGAAGTATTATTTACAGTACATTGAGTATACTGGACCAACAAACTAAGGAGCCAGTGTAA

Protein Analysis

519

Amino Acids

57.53

Weight (kDa)

6.13

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 203 - 245 2.3e-07 PPR repeat family
PPR_2 PF13041 303 - 350 8e-08 PPR repeat family
PPR PF01535 305 - 335 9.7e-07 PPR repeat
E_motif PF20431 421 - 482 2e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
Acc16I TGCGCA 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 1280
AccB1I GGYRCC 1 cut(s) 860
AccI GTMKAC 2 cut(s) 119, 1525
AccIII TCCGGA 1 cut(s) 972
AclWI GGATC 3 cut(s) 73, 915, 1155
AcsI RAATTY 1 cut(s) 514
AcuI CTGAAG 3 cut(s) 684, 744, 1097
AfaI GTAC 1 cut(s) 1516
AfiI CCNNNNNNNGG 1 cut(s) 904
AgsI TTSAA 6 cut(s) 55, 173, 484, 534, 1211, 1310
Alw21I GWGCWC 2 cut(s) 49, 835
Alw26I GTCTC 5 cut(s) 152, 179, 567, 1404, 1473
Alw44I GTGCAC 1 cut(s) 45
AlwI GGATC 3 cut(s) 73, 915, 1155
AlwNI CAGNNNCTG 1 cut(s) 14
Aor13HI TCCGGA 1 cut(s) 972
AoxI GGCC 2 cut(s) 5, 1057
ApaLI GTGCAC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 292, 1393
ApoI RAATTY 1 cut(s) 514
AseI ATTAAT 1 cut(s) 672
AspLEI GCGC 2 cut(s) 577, 1170
AspS9I GGNCC 4 cut(s) 5, 316, 631, 1531
AsuHPI GGTGA 3 cut(s) 808, 971, 1348
AvaII GGWCC 3 cut(s) 316, 631, 1531
BaeGI GKGCMC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 860
BanII GRGCYC 1 cut(s) 835
BarI GAAGNNNNNNTAC 4 cut(s) 22, 54, 294, 326
Bbv12I GWGCWC 2 cut(s) 49, 835
BbvCI CCTCAGC 1 cut(s) 773
BbvI GCAGC 2 cut(s) 279, 1405
BccI CCATC 4 cut(s) 335, 1362, 1367, 1497
BcoDI GTCTC 5 cut(s) 152, 179, 567, 1404, 1473
BfaI CTAG 3 cut(s) 204, 236, 1365
BfmI CTRYAG 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 1280
BglII AGATCT 2 cut(s) 486, 1080
BisI GCNGC 2 cut(s) 293, 1394
BlsI GCNGC 2 cut(s) 294, 1395
Bme18I GGWCC 3 cut(s) 316, 631, 1531
BmgT120I GGNCC 4 cut(s) 5, 316, 631, 1531
BmiI GGNNCC 3 cut(s) 6, 862, 1548
BmrI ACTGGG 1 cut(s) 1250
BmsI GCATC 8 cut(s) 166, 436, 562, 703, 1168, 1191, 1364, 1421
BmuI ACTGGG 1 cut(s) 1250
BoxI GACNNNNGTC 1 cut(s) 1275
BpmI CTGGAG 2 cut(s) 375, 1497
Bpu10I CCTNAGC 2 cut(s) 296, 773
BpuEI CTTGAG 2 cut(s) 681, 1013
BsaAI YACGTR 1 cut(s) 1333
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 3 cut(s) 82, 1122, 1153
BsaWI WCCGGW 2 cut(s) 313, 972
BsaXI ACNNNNNCTCC 1 cut(s) 1538
Bsc4I CCNNNNNNNGG 1 cut(s) 904
Bse1I ACTGG 4 cut(s) 889, 1245, 1533, 1550
Bse3DI GCAATG 1 cut(s) 723
BseAI TCCGGA 1 cut(s) 972
BseDI CCNNGG 3 cut(s) 82, 1122, 1153
BseGI GGATG 5 cut(s) 100, 427, 1378, 1436, 1489
BseLI CCNNNNNNNGG 1 cut(s) 904
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 2 cut(s) 40, 764
BseNI ACTGG 4 cut(s) 889, 1245, 1533, 1550
BseRI GAGGAG 1 cut(s) 1468
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 2 cut(s) 279, 1405
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 2 cut(s) 7, 1059
BshNI GGYRCC 1 cut(s) 860
BsiHKAI GWGCWC 2 cut(s) 49, 835
BsiSI CCGG 2 cut(s) 314, 973
BslFI GGGAC 2 cut(s) 1246, 1471
BslI CCNNNNNNNGG 1 cut(s) 904
BsmAI GTCTC 5 cut(s) 152, 179, 567, 1404, 1473
BsmFI GGGAC 2 cut(s) 1246, 1471
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 2 cut(s) 7, 1059
Bso31I GGTCTC 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 49, 835
Bsp13I TCCGGA 1 cut(s) 972
Bsp143I GATC 6 cut(s) 78, 486, 607, 907, 1080, 1147
Bsp19I CCATGG 2 cut(s) 82, 1122
BspANI GGCC 2 cut(s) 7, 1059
BspCNI CTCAG 2 cut(s) 39, 765
BspEI TCCGGA 1 cut(s) 972
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 3 cut(s) 6, 862, 1548
BspMI ACCTGC 1 cut(s) 1280
BspPI GGATC 3 cut(s) 73, 915, 1155
BspT107I GGYRCC 1 cut(s) 860
BspTNI GGTCTC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 723
BsrI ACTGG 4 cut(s) 889, 1245, 1533, 1550
BssECI CCNNGG 3 cut(s) 82, 1122, 1153
BssMI GATC 6 cut(s) 78, 486, 607, 907, 1080, 1147
BssNAI GTATAC 1 cut(s) 1526
BssT1I CCWWGG 3 cut(s) 82, 1122, 1153
Bst1107I GTATAC 1 cut(s) 1526
Bst4CI ACNGT 3 cut(s) 1131, 1466, 1514
Bst6I CTCTTC 1 cut(s) 1092
BstBAI YACGTR 1 cut(s) 1333
BstC8I GCNNGC 4 cut(s) 899, 1045, 1057, 1425
BstDEI CTNAG 4 cut(s) 26, 296, 773, 1542
BstDSI CCRYGG 2 cut(s) 82, 1122
BstENI CCTNNNNNAGG 1 cut(s) 902
BstF5I GGATG 5 cut(s) 100, 427, 1378, 1436, 1489
BstHHI GCGC 2 cut(s) 577, 1170
BstKTI GATC 6 cut(s) 81, 489, 610, 910, 1083, 1150
BstMAI GTCTC 5 cut(s) 152, 179, 567, 1404, 1473
BstMBI GATC 6 cut(s) 78, 486, 607, 907, 1080, 1147
BstMWI GCNNNNNNNGC 2 cut(s) 404, 1361
BstNSI RCATGY 2 cut(s) 68, 598
BstPAI GACNNNNGTC 1 cut(s) 1275
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 279, 1405
BstX2I RGATCY 5 cut(s) 78, 486, 907, 1080, 1147
BstYI RGATCY 5 cut(s) 78, 486, 907, 1080, 1147
BstZ17I GTATAC 1 cut(s) 1526
BsuRI GGCC 2 cut(s) 7, 1059
BtgI CCRYGG 2 cut(s) 82, 1122
BtsCI GGATG 5 cut(s) 100, 427, 1378, 1436, 1489
BtsI GCAGTG 1 cut(s) 785
BtsIMutI CAGTG 2 cut(s) 785, 1557
BveI ACCTGC 1 cut(s) 1280
Cac8I GCNNGC 4 cut(s) 899, 1045, 1057, 1425
CaiI CAGNNNCTG 1 cut(s) 14
CciI TCATGA 1 cut(s) 565
CfoI GCGC 2 cut(s) 577, 1170
Cfr13I GGNCC 4 cut(s) 5, 316, 631, 1531
Csp6I GTAC 1 cut(s) 1515
CviQI GTAC 1 cut(s) 1515
DdeI CTNAG 4 cut(s) 26, 296, 773, 1542
DpnI GATC 6 cut(s) 80, 488, 609, 909, 1082, 1149
DpnII GATC 6 cut(s) 78, 486, 607, 907, 1080, 1147
Eam1104I CTCTTC 1 cut(s) 1092
EarI CTCTTC 1 cut(s) 1092
Ecl136II GAGCTC 1 cut(s) 833
Eco130I CCWWGG 3 cut(s) 82, 1122, 1153
Eco24I GRGCYC 1 cut(s) 835
Eco31I GGTCTC 1 cut(s) 567
Eco32I GATATC 2 cut(s) 219, 540
Eco47I GGWCC 3 cut(s) 316, 631, 1531
Eco53kI GAGCTC 1 cut(s) 833
Eco57I CTGAAG 3 cut(s) 684, 744, 1097
EcoICRI GAGCTC 1 cut(s) 833
EcoNI CCTNNNNNAGG 1 cut(s) 902
EcoRV GATATC 2 cut(s) 219, 540
EcoT14I CCWWGG 3 cut(s) 82, 1122, 1153
EcoT22I ATGCAT 5 cut(s) 451, 481, 951, 1183, 1357
EcoT38I GRGCYC 1 cut(s) 835
ErhI CCWWGG 3 cut(s) 82, 1122, 1153
FaqI GGGAC 2 cut(s) 1246, 1471
FauNDI CATATG 4 cut(s) 451, 987, 1226, 1263
FblI GTMKAC 2 cut(s) 119, 1525
Fnu4HI GCNGC 2 cut(s) 293, 1394
FokI GGATG 5 cut(s) 87, 434, 1385, 1443, 1476
FriOI GRGCYC 1 cut(s) 835
Fsp4HI GCNGC 2 cut(s) 293, 1394
FspBI CTAG 3 cut(s) 204, 236, 1365
FspI TGCGCA 1 cut(s) 576
GlaI GCGC 2 cut(s) 576, 1169
GluI GCNGC 2 cut(s) 293, 1394
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 2 cut(s) 375, 1497
HaeIII GGCC 2 cut(s) 7, 1059
HapII CCGG 2 cut(s) 314, 973
HhaI GCGC 2 cut(s) 577, 1170
Hin6I GCGC 2 cut(s) 575, 1168
HinP1I GCGC 2 cut(s) 575, 1168
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 3 cut(s) 11, 116, 622
HpaII CCGG 2 cut(s) 314, 973
HphI GGTGA 3 cut(s) 808, 971, 1348
Hpy166II GTNNAC 8 cut(s) 47, 120, 766, 820, 921, 1066, 1270, 1526
Hpy188I TCNGA 3 cut(s) 495, 601, 1360
Hpy188III TCNNGA 6 cut(s) 331, 354, 484, 566, 812, 973
Hpy8I GTNNAC 8 cut(s) 47, 120, 766, 820, 921, 1066, 1270, 1526
HpyAV CCTTC 4 cut(s) 48, 296, 746, 1064
HpyCH4III ACNGT 3 cut(s) 1131, 1466, 1514
HpyCH4IV ACGT 1 cut(s) 1332
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 1361
HpyF3I CTNAG 4 cut(s) 26, 296, 773, 1542
HpySE526I ACGT 1 cut(s) 1332
HspAI GCGC 2 cut(s) 575, 1168
Kpn2I TCCGGA 1 cut(s) 972
Kzo9I GATC 6 cut(s) 78, 486, 607, 907, 1080, 1147
LmnI GCTCC 2 cut(s) 830, 1546
Lsp1109I GCAGC 2 cut(s) 279, 1405
LweI GCATC 8 cut(s) 166, 436, 562, 703, 1168, 1191, 1364, 1421
MaeI CTAG 3 cut(s) 204, 236, 1365
MaeII ACGT 1 cut(s) 1332
MaeIII GTNAC 3 cut(s) 16, 464, 687
MalI GATC 6 cut(s) 80, 488, 609, 909, 1082, 1149
MboI GATC 6 cut(s) 78, 486, 607, 907, 1080, 1147
MboII GAAGA 8 cut(s) 26, 84, 86, 185, 750, 800, 1090, 1109
MflI RGATCY 5 cut(s) 78, 486, 907, 1080, 1147
MhlI GDGCHC 2 cut(s) 49, 835
MluCI AATT 6 cut(s) 168, 339, 399, 514, 529, 553
MlyI GAGTC 2 cut(s) 5, 125
MmeI TCCRAC 2 cut(s) 399, 1418
Mph1103I ATGCAT 5 cut(s) 451, 481, 951, 1183, 1357
MroI TCCGGA 1 cut(s) 972
MseI TTAA 8 cut(s) 276, 284, 378, 402, 588, 672, 681, 1415
MslI CAYNNNNRTG 4 cut(s) 87, 393, 570, 789
MspA1I CMGCKG 1 cut(s) 1427
MspI CCGG 2 cut(s) 314, 973
Mva1269I GAATGC 1 cut(s) 479
MwoI GCNNNNNNNGC 2 cut(s) 404, 1361
NcoI CCATGG 2 cut(s) 82, 1122
NdeI CATATG 4 cut(s) 451, 987, 1226, 1263
NdeII GATC 6 cut(s) 78, 486, 607, 907, 1080, 1147
NlaIV GGNNCC 3 cut(s) 6, 862, 1548
NsbI TGCGCA 1 cut(s) 576
NsiI ATGCAT 5 cut(s) 451, 481, 951, 1183, 1357
NspI RCATGY 2 cut(s) 68, 598
PagI TCATGA 1 cut(s) 565
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 622
PkrI GCNGC 2 cut(s) 294, 1395
PleI GAGTC 2 cut(s) 5, 124
PpsI GAGTC 2 cut(s) 5, 124
Ppu21I YACGTR 1 cut(s) 1333
PshAI GACNNNNGTC 1 cut(s) 1275
PshBI ATTAAT 1 cut(s) 672
PsiI TTATAA 1 cut(s) 879
Psp124BI GAGCTC 1 cut(s) 835
PspFI CCCAGC 1 cut(s) 407
PspN4I GGNNCC 3 cut(s) 6, 862, 1548
PspPI GGNCC 4 cut(s) 5, 316, 631, 1531
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 5 cut(s) 78, 486, 907, 1080, 1147
PvuII CAGCTG 1 cut(s) 1427
RsaI GTAC 1 cut(s) 1516
RsaNI GTAC 1 cut(s) 1515
RseI CAYNNNNRTG 4 cut(s) 87, 393, 570, 789
SacI GAGCTC 1 cut(s) 835
SaqAI TTAA 8 cut(s) 276, 284, 378, 402, 588, 672, 681, 1415
SatI GCNGC 2 cut(s) 293, 1394
Sau3AI GATC 6 cut(s) 78, 486, 607, 907, 1080, 1147
Sau96I GGNCC 4 cut(s) 5, 316, 631, 1531
SchI GAGTC 2 cut(s) 5, 125
SduI GDGCHC 2 cut(s) 49, 835
SfaNI GCATC 8 cut(s) 166, 436, 562, 703, 1168, 1191, 1364, 1421
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 3 cut(s) 316, 631, 1531
SmiMI CAYNNNNRTG 4 cut(s) 87, 393, 570, 789
SmlI CTYRAG 2 cut(s) 696, 992
SmoI CTYRAG 2 cut(s) 696, 992
Sse9I AATT 6 cut(s) 168, 339, 399, 514, 529, 553
SspI AATATT 1 cut(s) 1321
SspMI CTAG 3 cut(s) 204, 236, 1365
SstI GAGCTC 1 cut(s) 835
StyI CCWWGG 3 cut(s) 82, 1122, 1153
TaaI ACNGT 3 cut(s) 1131, 1466, 1514
TaiI ACGT 1 cut(s) 1335
TaqI TCGA 1 cut(s) 97
TasI AATT 6 cut(s) 168, 339, 399, 514, 529, 553
TatI WGTACW 1 cut(s) 1514
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 8 cut(s) 276, 284, 378, 402, 588, 672, 681, 1415
Tru9I TTAA 8 cut(s) 276, 284, 378, 402, 588, 672, 681, 1415
TscAI CASTG 2 cut(s) 785, 1557
TseI GCWGC 2 cut(s) 292, 1393
TspDTI ATGAA 2 cut(s) 719, 1076
TspRI CASTG 2 cut(s) 785, 1557
VneI GTGCAC 1 cut(s) 45
VpaK11BI GGWCC 3 cut(s) 316, 631, 1531
VspI ATTAAT 1 cut(s) 672
XagI CCTNNNNNAGG 1 cut(s) 902
XapI RAATTY 1 cut(s) 514
XceI RCATGY 2 cut(s) 68, 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XmiI GTMKAC 2 cut(s) 119, 1525
XspI CTAG 3 cut(s) 204, 236, 1365
Zsp2I ATGCAT 5 cut(s) 451, 481, 951, 1183, 1357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.