Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 |
| fragaria_vesca | FvH4_1g29890 FvH4_1g29890 FvH4_1g29890 |
| malus_domestica | MD02G1212500.v1.1 |
| prunus_persica | Prupe.3G127300_v2.0.a1 |
| pyrus_communis | pycom02g17620 |
| rosa_laevigata | RLG00000022567 |
| rosa_multiflora | Rmu_sc0005781.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00389610 |
| rosa_rugosa | Rorug03G0279300 |
| rosa_samantha | Rh3AG326200 Rh3BG362500 Rh3CG358600 Rh3DG361900 |
| rosa_wichuraiana | Rw3G028560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 879 |
| Acc16I | TGCGCA | 1 cut(s) | 576 |
| Acc36I | ACCTGC | 1 cut(s) | 1280 |
| AccB1I | GGYRCC | 1 cut(s) | 860 |
| AccI | GTMKAC | 2 cut(s) | 119, 1525 |
| AccIII | TCCGGA | 1 cut(s) | 972 |
| AclWI | GGATC | 3 cut(s) | 73, 915, 1155 |
| AcsI | RAATTY | 1 cut(s) | 514 |
| AcuI | CTGAAG | 3 cut(s) | 684, 744, 1097 |
| AfaI | GTAC | 1 cut(s) | 1516 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 904 |
| AgsI | TTSAA | 6 cut(s) | 55, 173, 484, 534, 1211, 1310 |
| Alw21I | GWGCWC | 2 cut(s) | 49, 835 |
| Alw26I | GTCTC | 5 cut(s) | 152, 179, 567, 1404, 1473 |
| Alw44I | GTGCAC | 1 cut(s) | 45 |
| AlwI | GGATC | 3 cut(s) | 73, 915, 1155 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 14 |
| Aor13HI | TCCGGA | 1 cut(s) | 972 |
| AoxI | GGCC | 2 cut(s) | 5, 1057 |
| ApaLI | GTGCAC | 1 cut(s) | 45 |
| ApeKI | GCWGC | 2 cut(s) | 292, 1393 |
| ApoI | RAATTY | 1 cut(s) | 514 |
| AseI | ATTAAT | 1 cut(s) | 672 |
| AspLEI | GCGC | 2 cut(s) | 577, 1170 |
| AspS9I | GGNCC | 4 cut(s) | 5, 316, 631, 1531 |
| AsuHPI | GGTGA | 3 cut(s) | 808, 971, 1348 |
| AvaII | GGWCC | 3 cut(s) | 316, 631, 1531 |
| BaeGI | GKGCMC | 1 cut(s) | 49 |
| BanI | GGYRCC | 1 cut(s) | 860 |
| BanII | GRGCYC | 1 cut(s) | 835 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 22, 54, 294, 326 |
| Bbv12I | GWGCWC | 2 cut(s) | 49, 835 |
| BbvCI | CCTCAGC | 1 cut(s) | 773 |
| BbvI | GCAGC | 2 cut(s) | 279, 1405 |
| BccI | CCATC | 4 cut(s) | 335, 1362, 1367, 1497 |
| BcoDI | GTCTC | 5 cut(s) | 152, 179, 567, 1404, 1473 |
| BfaI | CTAG | 3 cut(s) | 204, 236, 1365 |
| BfmI | CTRYAG | 1 cut(s) | 120 |
| BfuAI | ACCTGC | 1 cut(s) | 1280 |
| BglII | AGATCT | 2 cut(s) | 486, 1080 |
| BisI | GCNGC | 2 cut(s) | 293, 1394 |
| BlsI | GCNGC | 2 cut(s) | 294, 1395 |
| Bme18I | GGWCC | 3 cut(s) | 316, 631, 1531 |
| BmgT120I | GGNCC | 4 cut(s) | 5, 316, 631, 1531 |
| BmiI | GGNNCC | 3 cut(s) | 6, 862, 1548 |
| BmrI | ACTGGG | 1 cut(s) | 1250 |
| BmsI | GCATC | 8 cut(s) | 166, 436, 562, 703, 1168, 1191, 1364, 1421 |
| BmuI | ACTGGG | 1 cut(s) | 1250 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1275 |
| BpmI | CTGGAG | 2 cut(s) | 375, 1497 |
| Bpu10I | CCTNAGC | 2 cut(s) | 296, 773 |
| BpuEI | CTTGAG | 2 cut(s) | 681, 1013 |
| BsaAI | YACGTR | 1 cut(s) | 1333 |
| BsaI | GGTCTC | 1 cut(s) | 567 |
| BsaJI | CCNNGG | 3 cut(s) | 82, 1122, 1153 |
| BsaWI | WCCGGW | 2 cut(s) | 313, 972 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1538 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 904 |
| Bse1I | ACTGG | 4 cut(s) | 889, 1245, 1533, 1550 |
| Bse3DI | GCAATG | 1 cut(s) | 723 |
| BseAI | TCCGGA | 1 cut(s) | 972 |
| BseDI | CCNNGG | 3 cut(s) | 82, 1122, 1153 |
| BseGI | GGATG | 5 cut(s) | 100, 427, 1378, 1436, 1489 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 904 |
| BseMI | GCAATG | 1 cut(s) | 723 |
| BseMII | CTCAG | 2 cut(s) | 40, 764 |
| BseNI | ACTGG | 4 cut(s) | 889, 1245, 1533, 1550 |
| BseRI | GAGGAG | 1 cut(s) | 1468 |
| BseSI | GKGCMC | 1 cut(s) | 49 |
| BseXI | GCAGC | 2 cut(s) | 279, 1405 |
| BseYI | CCCAGC | 1 cut(s) | 407 |
| BshFI | GGCC | 2 cut(s) | 7, 1059 |
| BshNI | GGYRCC | 1 cut(s) | 860 |
| BsiHKAI | GWGCWC | 2 cut(s) | 49, 835 |
| BsiSI | CCGG | 2 cut(s) | 314, 973 |
| BslFI | GGGAC | 2 cut(s) | 1246, 1471 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 904 |
| BsmAI | GTCTC | 5 cut(s) | 152, 179, 567, 1404, 1473 |
| BsmFI | GGGAC | 2 cut(s) | 1246, 1471 |
| BsmI | GAATGC | 1 cut(s) | 479 |
| BsnI | GGCC | 2 cut(s) | 7, 1059 |
| Bso31I | GGTCTC | 1 cut(s) | 567 |
| Bsp1286I | GDGCHC | 2 cut(s) | 49, 835 |
| Bsp13I | TCCGGA | 1 cut(s) | 972 |
| Bsp143I | GATC | 6 cut(s) | 78, 486, 607, 907, 1080, 1147 |
| Bsp19I | CCATGG | 2 cut(s) | 82, 1122 |
| BspANI | GGCC | 2 cut(s) | 7, 1059 |
| BspCNI | CTCAG | 2 cut(s) | 39, 765 |
| BspEI | TCCGGA | 1 cut(s) | 972 |
| BspHI | TCATGA | 1 cut(s) | 565 |
| BspLI | GGNNCC | 3 cut(s) | 6, 862, 1548 |
| BspMI | ACCTGC | 1 cut(s) | 1280 |
| BspPI | GGATC | 3 cut(s) | 73, 915, 1155 |
| BspT107I | GGYRCC | 1 cut(s) | 860 |
| BspTNI | GGTCTC | 1 cut(s) | 567 |
| BsrDI | GCAATG | 1 cut(s) | 723 |
| BsrI | ACTGG | 4 cut(s) | 889, 1245, 1533, 1550 |
| BssECI | CCNNGG | 3 cut(s) | 82, 1122, 1153 |
| BssMI | GATC | 6 cut(s) | 78, 486, 607, 907, 1080, 1147 |
| BssNAI | GTATAC | 1 cut(s) | 1526 |
| BssT1I | CCWWGG | 3 cut(s) | 82, 1122, 1153 |
| Bst1107I | GTATAC | 1 cut(s) | 1526 |
| Bst4CI | ACNGT | 3 cut(s) | 1131, 1466, 1514 |
| Bst6I | CTCTTC | 1 cut(s) | 1092 |
| BstBAI | YACGTR | 1 cut(s) | 1333 |
| BstC8I | GCNNGC | 4 cut(s) | 899, 1045, 1057, 1425 |
| BstDEI | CTNAG | 4 cut(s) | 26, 296, 773, 1542 |
| BstDSI | CCRYGG | 2 cut(s) | 82, 1122 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 902 |
| BstF5I | GGATG | 5 cut(s) | 100, 427, 1378, 1436, 1489 |
| BstHHI | GCGC | 2 cut(s) | 577, 1170 |
| BstKTI | GATC | 6 cut(s) | 81, 489, 610, 910, 1083, 1150 |
| BstMAI | GTCTC | 5 cut(s) | 152, 179, 567, 1404, 1473 |
| BstMBI | GATC | 6 cut(s) | 78, 486, 607, 907, 1080, 1147 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 404, 1361 |
| BstNSI | RCATGY | 2 cut(s) | 68, 598 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1275 |
| BstSFI | CTRYAG | 1 cut(s) | 120 |
| BstSLI | GKGCMC | 1 cut(s) | 49 |
| BstV1I | GCAGC | 2 cut(s) | 279, 1405 |
| BstX2I | RGATCY | 5 cut(s) | 78, 486, 907, 1080, 1147 |
| BstYI | RGATCY | 5 cut(s) | 78, 486, 907, 1080, 1147 |
| BstZ17I | GTATAC | 1 cut(s) | 1526 |
| BsuRI | GGCC | 2 cut(s) | 7, 1059 |
| BtgI | CCRYGG | 2 cut(s) | 82, 1122 |
| BtsCI | GGATG | 5 cut(s) | 100, 427, 1378, 1436, 1489 |
| BtsI | GCAGTG | 1 cut(s) | 785 |
| BtsIMutI | CAGTG | 2 cut(s) | 785, 1557 |
| BveI | ACCTGC | 1 cut(s) | 1280 |
| Cac8I | GCNNGC | 4 cut(s) | 899, 1045, 1057, 1425 |
| CaiI | CAGNNNCTG | 1 cut(s) | 14 |
| CciI | TCATGA | 1 cut(s) | 565 |
| CfoI | GCGC | 2 cut(s) | 577, 1170 |
| Cfr13I | GGNCC | 4 cut(s) | 5, 316, 631, 1531 |
| Csp6I | GTAC | 1 cut(s) | 1515 |
| CviQI | GTAC | 1 cut(s) | 1515 |
| DdeI | CTNAG | 4 cut(s) | 26, 296, 773, 1542 |
| DpnI | GATC | 6 cut(s) | 80, 488, 609, 909, 1082, 1149 |
| DpnII | GATC | 6 cut(s) | 78, 486, 607, 907, 1080, 1147 |
| Eam1104I | CTCTTC | 1 cut(s) | 1092 |
| EarI | CTCTTC | 1 cut(s) | 1092 |
| Ecl136II | GAGCTC | 1 cut(s) | 833 |
| Eco130I | CCWWGG | 3 cut(s) | 82, 1122, 1153 |
| Eco24I | GRGCYC | 1 cut(s) | 835 |
| Eco31I | GGTCTC | 1 cut(s) | 567 |
| Eco32I | GATATC | 2 cut(s) | 219, 540 |
| Eco47I | GGWCC | 3 cut(s) | 316, 631, 1531 |
| Eco53kI | GAGCTC | 1 cut(s) | 833 |
| Eco57I | CTGAAG | 3 cut(s) | 684, 744, 1097 |
| EcoICRI | GAGCTC | 1 cut(s) | 833 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 902 |
| EcoRV | GATATC | 2 cut(s) | 219, 540 |
| EcoT14I | CCWWGG | 3 cut(s) | 82, 1122, 1153 |
| EcoT22I | ATGCAT | 5 cut(s) | 451, 481, 951, 1183, 1357 |
| EcoT38I | GRGCYC | 1 cut(s) | 835 |
| ErhI | CCWWGG | 3 cut(s) | 82, 1122, 1153 |
| FaqI | GGGAC | 2 cut(s) | 1246, 1471 |
| FauNDI | CATATG | 4 cut(s) | 451, 987, 1226, 1263 |
| FblI | GTMKAC | 2 cut(s) | 119, 1525 |
| Fnu4HI | GCNGC | 2 cut(s) | 293, 1394 |
| FokI | GGATG | 5 cut(s) | 87, 434, 1385, 1443, 1476 |
| FriOI | GRGCYC | 1 cut(s) | 835 |
| Fsp4HI | GCNGC | 2 cut(s) | 293, 1394 |
| FspBI | CTAG | 3 cut(s) | 204, 236, 1365 |
| FspI | TGCGCA | 1 cut(s) | 576 |
| GlaI | GCGC | 2 cut(s) | 576, 1169 |
| GluI | GCNGC | 2 cut(s) | 293, 1394 |
| GsaI | CCCAGC | 1 cut(s) | 411 |
| GsuI | CTGGAG | 2 cut(s) | 375, 1497 |
| HaeIII | GGCC | 2 cut(s) | 7, 1059 |
| HapII | CCGG | 2 cut(s) | 314, 973 |
| HhaI | GCGC | 2 cut(s) | 577, 1170 |
| Hin6I | GCGC | 2 cut(s) | 575, 1168 |
| HinP1I | GCGC | 2 cut(s) | 575, 1168 |
| HindIII | AAGCTT | 1 cut(s) | 636 |
| HinfI | GANTC | 3 cut(s) | 11, 116, 622 |
| HpaII | CCGG | 2 cut(s) | 314, 973 |
| HphI | GGTGA | 3 cut(s) | 808, 971, 1348 |
| Hpy166II | GTNNAC | 8 cut(s) | 47, 120, 766, 820, 921, 1066, 1270, 1526 |
| Hpy188I | TCNGA | 3 cut(s) | 495, 601, 1360 |
| Hpy188III | TCNNGA | 6 cut(s) | 331, 354, 484, 566, 812, 973 |
| Hpy8I | GTNNAC | 8 cut(s) | 47, 120, 766, 820, 921, 1066, 1270, 1526 |
| HpyAV | CCTTC | 4 cut(s) | 48, 296, 746, 1064 |
| HpyCH4III | ACNGT | 3 cut(s) | 1131, 1466, 1514 |
| HpyCH4IV | ACGT | 1 cut(s) | 1332 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 404, 1361 |
| HpyF3I | CTNAG | 4 cut(s) | 26, 296, 773, 1542 |
| HpySE526I | ACGT | 1 cut(s) | 1332 |
| HspAI | GCGC | 2 cut(s) | 575, 1168 |
| Kpn2I | TCCGGA | 1 cut(s) | 972 |
| Kzo9I | GATC | 6 cut(s) | 78, 486, 607, 907, 1080, 1147 |
| LmnI | GCTCC | 2 cut(s) | 830, 1546 |
| Lsp1109I | GCAGC | 2 cut(s) | 279, 1405 |
| LweI | GCATC | 8 cut(s) | 166, 436, 562, 703, 1168, 1191, 1364, 1421 |
| MaeI | CTAG | 3 cut(s) | 204, 236, 1365 |
| MaeII | ACGT | 1 cut(s) | 1332 |
| MaeIII | GTNAC | 3 cut(s) | 16, 464, 687 |
| MalI | GATC | 6 cut(s) | 80, 488, 609, 909, 1082, 1149 |
| MboI | GATC | 6 cut(s) | 78, 486, 607, 907, 1080, 1147 |
| MboII | GAAGA | 8 cut(s) | 26, 84, 86, 185, 750, 800, 1090, 1109 |
| MflI | RGATCY | 5 cut(s) | 78, 486, 907, 1080, 1147 |
| MhlI | GDGCHC | 2 cut(s) | 49, 835 |
| MluCI | AATT | 6 cut(s) | 168, 339, 399, 514, 529, 553 |
| MlyI | GAGTC | 2 cut(s) | 5, 125 |
| MmeI | TCCRAC | 2 cut(s) | 399, 1418 |
| Mph1103I | ATGCAT | 5 cut(s) | 451, 481, 951, 1183, 1357 |
| MroI | TCCGGA | 1 cut(s) | 972 |
| MseI | TTAA | 8 cut(s) | 276, 284, 378, 402, 588, 672, 681, 1415 |
| MslI | CAYNNNNRTG | 4 cut(s) | 87, 393, 570, 789 |
| MspA1I | CMGCKG | 1 cut(s) | 1427 |
| MspI | CCGG | 2 cut(s) | 314, 973 |
| Mva1269I | GAATGC | 1 cut(s) | 479 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 404, 1361 |
| NcoI | CCATGG | 2 cut(s) | 82, 1122 |
| NdeI | CATATG | 4 cut(s) | 451, 987, 1226, 1263 |
| NdeII | GATC | 6 cut(s) | 78, 486, 607, 907, 1080, 1147 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 862, 1548 |
| NsbI | TGCGCA | 1 cut(s) | 576 |
| NsiI | ATGCAT | 5 cut(s) | 451, 481, 951, 1183, 1357 |
| NspI | RCATGY | 2 cut(s) | 68, 598 |
| PagI | TCATGA | 1 cut(s) | 565 |
| PctI | GAATGC | 1 cut(s) | 479 |
| PfeI | GAWTC | 1 cut(s) | 622 |
| PkrI | GCNGC | 2 cut(s) | 294, 1395 |
| PleI | GAGTC | 2 cut(s) | 5, 124 |
| PpsI | GAGTC | 2 cut(s) | 5, 124 |
| Ppu21I | YACGTR | 1 cut(s) | 1333 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1275 |
| PshBI | ATTAAT | 1 cut(s) | 672 |
| PsiI | TTATAA | 1 cut(s) | 879 |
| Psp124BI | GAGCTC | 1 cut(s) | 835 |
| PspFI | CCCAGC | 1 cut(s) | 407 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 862, 1548 |
| PspPI | GGNCC | 4 cut(s) | 5, 316, 631, 1531 |
| PstNI | CAGNNNCTG | 1 cut(s) | 14 |
| PsuI | RGATCY | 5 cut(s) | 78, 486, 907, 1080, 1147 |
| PvuII | CAGCTG | 1 cut(s) | 1427 |
| RsaI | GTAC | 1 cut(s) | 1516 |
| RsaNI | GTAC | 1 cut(s) | 1515 |
| RseI | CAYNNNNRTG | 4 cut(s) | 87, 393, 570, 789 |
| SacI | GAGCTC | 1 cut(s) | 835 |
| SaqAI | TTAA | 8 cut(s) | 276, 284, 378, 402, 588, 672, 681, 1415 |
| SatI | GCNGC | 2 cut(s) | 293, 1394 |
| Sau3AI | GATC | 6 cut(s) | 78, 486, 607, 907, 1080, 1147 |
| Sau96I | GGNCC | 4 cut(s) | 5, 316, 631, 1531 |
| SchI | GAGTC | 2 cut(s) | 5, 125 |
| SduI | GDGCHC | 2 cut(s) | 49, 835 |
| SfaNI | GCATC | 8 cut(s) | 166, 436, 562, 703, 1168, 1191, 1364, 1421 |
| SfcI | CTRYAG | 1 cut(s) | 120 |
| SinI | GGWCC | 3 cut(s) | 316, 631, 1531 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 87, 393, 570, 789 |
| SmlI | CTYRAG | 2 cut(s) | 696, 992 |
| SmoI | CTYRAG | 2 cut(s) | 696, 992 |
| Sse9I | AATT | 6 cut(s) | 168, 339, 399, 514, 529, 553 |
| SspI | AATATT | 1 cut(s) | 1321 |
| SspMI | CTAG | 3 cut(s) | 204, 236, 1365 |
| SstI | GAGCTC | 1 cut(s) | 835 |
| StyI | CCWWGG | 3 cut(s) | 82, 1122, 1153 |
| TaaI | ACNGT | 3 cut(s) | 1131, 1466, 1514 |
| TaiI | ACGT | 1 cut(s) | 1335 |
| TaqI | TCGA | 1 cut(s) | 97 |
| TasI | AATT | 6 cut(s) | 168, 339, 399, 514, 529, 553 |
| TatI | WGTACW | 1 cut(s) | 1514 |
| TfiI | GAWTC | 1 cut(s) | 622 |
| Tru1I | TTAA | 8 cut(s) | 276, 284, 378, 402, 588, 672, 681, 1415 |
| Tru9I | TTAA | 8 cut(s) | 276, 284, 378, 402, 588, 672, 681, 1415 |
| TscAI | CASTG | 2 cut(s) | 785, 1557 |
| TseI | GCWGC | 2 cut(s) | 292, 1393 |
| TspDTI | ATGAA | 2 cut(s) | 719, 1076 |
| TspRI | CASTG | 2 cut(s) | 785, 1557 |
| VneI | GTGCAC | 1 cut(s) | 45 |
| VpaK11BI | GGWCC | 3 cut(s) | 316, 631, 1531 |
| VspI | ATTAAT | 1 cut(s) | 672 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 902 |
| XapI | RAATTY | 1 cut(s) | 514 |
| XceI | RCATGY | 2 cut(s) | 68, 598 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 952 |
| XmiI | GTMKAC | 2 cut(s) | 119, 1525 |
| XspI | CTAG | 3 cut(s) | 204, 236, 1365 |
| Zsp2I | ATGCAT | 5 cut(s) | 451, 481, 951, 1183, 1357 |