Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008664

Physical Location & Seq

Genomic Coordinates Forward (+)

15801952 .. 15804624

Gene Structure 2673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2673 bp

ATGAAAATGCTGAGAATATTCAATGTTATAAACCTAAATTTAAAAGGCACGAGAGCTGCCTATGGAAATGCTTCAATCAGATTTGAAAACACAACCAGGAGCTACCGCGTAGATGCCAGGCACTGTGAAGAGTTGTCTCTTCTGCTTCAAAGTTCCCAAAGTTCGTTAGCATTCAAACCCAATTACCAAGTATTATGTGCTATTCTAAAATCCTGTGCTGCCCTCATAGCCATCAACTTTGGGAAGTCTCTTCATGGTTATGTTGTCAAACAGGGCCATCTTTCCTGCCAGTCTATCTCTAAAGCTCTGCTTAACATGTATGCCAAATGTGGTGTATTGGGTGACTGCAAAATGCTTTTTGGTCAAATAGGTTCCTCGGATCCTGTCATATGGAACATTGTCTTATCTGGGTTTTCAGCATCCCGAAATTATGATGCTGAGGTAATAAGACTCTTTCATGAAATGTGTTTAGGTGGGAAGCCTAAGCCCACATCTGTTACCATTGCTACCATTCTTCCTGTGTGTGCTCGCTTAGCAGATTTAGATGTGGGGAAAAGCGTGCACTCTTGTGTGATAAAGTCTGGATTGATGACAGATGTCCTTGTTGGAAATGCTCTTATATCAATGTATTCAAAATGTGGGCTAGTTTCTGCTGATGCATACGCTGTGTTTAATGGCATTATTGACAAAGATGTTATTTCATGGAATGCAATGATTGCAGGGTTGGCTGAAAATAGATTCATACATGATGCATACAAGTTATTCAGTTGGATGCTCAAAGGACCAGTTGAACCAAATTATGCAACTATTGCAAATGTTCTGCCAATATGTGCTTCTTTAGATAAAAATACTGCGTACTGCGCTGGGAGAGAGATCCATTGTTATGTTCTGCGTCGGAATGAATTGGCAGCAGATGTTACTGTGTTCAATGCTTTGGTAAGTTTTCATTTACAACTTGGACGAATGGAAGAAGCGGAATCCTTGTTCCACCAAATGAAATCAAGAGATTTGGTTTCATGGAATGCAATTATTGCAGGGTATGCTTCAAATGGTGAGTGGTCAAAAGCATTGGATCTGTTTCACAAATTACTCTCTCTGCAGACGATTGGGCCAGATTCTGTTACCATTGTGAGCATTCTTCCTGCTTGTGCACAGTTACAGAACTTGGAGGTGGGGAAAAAGATCCACGGGTATATTCTTCGACATTGTAGCCTATTTGAAGCTACAACGGTTGGAAATGCCATGGTTAGTTTTTATGCAAAATGTGATAAGCTTGAAGCAGCTTTTGAGACTTTTTTGATGATTTCTAGGAGAGATTTGATATCATGGAATACCATACTTGTTGCCTTTGCAGAGATTGGGTATATTAACAACTTTTTGAACCTATTAGATGGGATGCTAAGGGAAGGTATGAGGCCTGACCATATAACCATTTTAAGCATAATACAATTTTGTGTTGCAATTTTGAGAGTAGATAAGGTTAAAGAAACTCATAGCTATTCAATTAGATCTGGCCTTTCGGTAGGCGATTGTGAGCCTACGATTGCAAATACTATGCTTGATGCATATGCCAAATGTGGTAACTTGACGTATGCTTTCAATATTTTTCAGAGTTTATTGCAGAAAAGGAATTTGGTTACTTGCAATTCTATGATTTCAGCTTATGTGAGTTGTGGTTCACTGGATGAGGCATATAAGATATTTAACAGAATGTCTGAAACAGATCTCACCACTTGGAATCTAATGGTTCGAGCTTATGCTGAAAATGGTTTTACTGCTGAAGCCCTCAGTGTGTTCCGTGAGTTACAAACTCAAGGAATGAAGCCTGATGCAATGACCTTTATGAGCCTTCTTCCCGTGTCTTCTCAAATGGCCTCAGTCCACCTGCTGAGACAGTGTCATGGATATGTGGTGAGAGCTTGTCTTAATGATCTGTGCTTGAAAGGAGCTCTGTTGGATATGTACGCAAAATGTGGTGCCATAGTATGTGCTTATAAGCTATTTCAGTCAAGCCCGGATAAGGATCTGGTTATGTTTACAGCTATGGTTGGCGGGTTAGCCATGCATGGAAGGGGAGAGGAAGCACTGAGGGTCTTCTCTCACATGCTTGACTTGGGTGTAAAGCCAGATAATGTTGTTATTACTGCTGTTTTATCTGCTTGTAGTCATGCTGGCCTGGTAAATGAAGGGTTGAAGATATTTAATTCGATAGAAGAGGTTCATGGGGTCAAACCAACAATGGAACAGTATGCTTGTGTGGTGGATCTCCTTGCGAGAGGTGGAAAAATTGAGGATGCATTTTCTTTTGTGTCCAGGATGCCTATTGAAGCTAATGCTAGCATATGGGGAACACTGCTGGGTGCTTGCAGGACTCATTGTAAGGTGGAATTGGGCCGTGTTGTGGCAGATCATCTTTTTAAAAATGAAGCTAATAATATTGGGAACTACGTGGTGATGTCAAATCTATATGCAGCAGAAGCTAGATGGGATGGGGTCATGGAGGTAAGAAAGCTGATGAAAACACGAGATCTAACAAAGCCAGCAGGATGCAGCTGGATAGAGGTGGAGAGGAGGAAGAATATTTTTATAGCTGGAGACTGGTCTCATCCAGAAAGAAGCGTTATTTACAGCACATTAAGTGCATTGGACCAACAAATAAAAGAGCCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1900864 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

891

Amino Acids

98.29

Weight (kDa)

8.09

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	230 - 269	6.8e-08	PPR repeat family
PPR_2	PF13041	336 - 384	4.9e-07	PPR repeat family
PPR	PF01535	338 - 365	4.3e-06	PPR repeat
PPR_2	PF13041	544 - 573	4e-06	PPR repeat family
PPR	PF01535	546 - 573	3.9e-07	PPR repeat
PPR_2	PF13041	575 - 618	4.4e-06	PPR repeat family
PPR_2	PF13041	675 - 722	1.3e-07	PPR repeat family
E_motif	PF20431	792 - 854	1.1e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490
fragaria_vesca	FvH4_1g29890 FvH4_1g29890 FvH4_1g29890
malus_domestica	MD02G1212500.v1.1
prunus_persica	Prupe.3G127300_v2.0.a1
pyrus_communis	pycom02g17620
rosa_laevigata	RLG00000022567
rosa_multiflora	Rmu_sc0005781.1_g000010
rosa_roxburghii	Rroxscaffold_6G00389610
rosa_rugosa	Rorug03G0279300
rosa_samantha	Rh3AG326200 Rh3BG362500 Rh3CG358600 Rh3DG361900
rosa_wichuraiana	Rw3G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	29, 1995
AarI	CACCTGC	1 cut(s)	1893
Acc36I	ACCTGC	1 cut(s)	1893
AccB1I	GGYRCC	1 cut(s)	1976
AccII	CGCG	1 cut(s)	108
AciI	CCGC	3 cut(s)	106, 974, 2052
AclWI	GGATC	7 cut(s)	374, 387, 868, 1080, 1177, 2031, 2271
AcsI	RAATTY	2 cut(s)	37, 1630
AcuI	CTGAAG	1 cut(s)	1800
AfaI	GTAC	2 cut(s)	857, 1964
AfiI	CCNNNNNNNGG	2 cut(s)	2020, 2401
AflIII	ACRYGT	1 cut(s)	315
AjnI	CCWGG	4 cut(s)	95, 116, 2175, 2312
AjuI	GAANNNNNNNTTGG	4 cut(s)	817, 849, 1616, 1648
AleI	CACNNNNGTG	1 cut(s)	567
AloI	GAACNNNNNNTCC	2 cut(s)	968, 1000
Alw21I	GWGCWC	4 cut(s)	529, 564, 1153, 1951
Alw26I	GTCTC	6 cut(s)	141, 252, 1283, 1885, 2589, 2607
Alw44I	GTGCAC	2 cut(s)	560, 1149
AlwI	GGATC	7 cut(s)	374, 387, 868, 1080, 1177, 2031, 2271
AlwNI	CAGNNNCTG	2 cut(s)	123, 1118
AoxI	GGCC	7 cut(s)	274, 1109, 1415, 1513, 1872, 2173, 2392
ApaLI	GTGCAC	2 cut(s)	560, 1149
ApeKI	GCWGC	6 cut(s)	56, 218, 908, 1280, 2471, 2550
ApoI	RAATTY	2 cut(s)	37, 1630
Asp700I	GAANNNNTTC	2 cut(s)	70, 2217
AspLEI	GCGC	1 cut(s)	863
AspS9I	GGNCC	5 cut(s)	274, 782, 1109, 2392, 2647
AsuC2I	CCSGG	1 cut(s)	2015
AsuHPI	GGTGA	5 cut(s)	353, 1064, 1720, 1924, 2464
AsuNHI	GCTAGC	1 cut(s)	2336
AvaII	GGWCC	2 cut(s)	782, 2647
BaeGI	GKGCMC	2 cut(s)	564, 1153
BamHI	GGATCC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	1976
BanII	GRGCYC	1 cut(s)	1951
BauI	CACGAG	2 cut(s)	49, 2523
BbsI	GAAGAC	2 cut(s)	1854, 2086
Bbv12I	GWGCWC	4 cut(s)	529, 564, 1153, 1951
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	6 cut(s)	43, 205, 920, 1292, 2483, 2562
BccI	CCATC	5 cut(s)	239, 285, 1385, 2478, 2483
BceAI	ACGGC	1 cut(s)	2379
BciT130I	CCWGG	4 cut(s)	97, 118, 2177, 2314
BcnI	CCSGG	1 cut(s)	2015
BcoDI	GTCTC	6 cut(s)	141, 252, 1283, 1885, 2589, 2607
BfaI	CTAG	4 cut(s)	644, 1308, 2337, 2481
BfmI	CTRYAG	1 cut(s)	1097
BfuAI	ACCTGC	1 cut(s)	1893
BglII	AGATCT	3 cut(s)	1508, 1723, 2527
BisI	GCNGC	6 cut(s)	57, 219, 909, 1281, 2472, 2551
BlpI	GCTNAGC	1 cut(s)	532
BlsI	GCNGC	6 cut(s)	58, 220, 910, 1282, 2473, 2552
Bme1390I	CCNGG	5 cut(s)	97, 118, 2015, 2177, 2314
Bme18I	GGWCC	2 cut(s)	782, 2647
BmgT120I	GGNCC	5 cut(s)	274, 782, 1109, 2392, 2647
BmiI	GGNNCC	3 cut(s)	373, 381, 1978
BmrFI	CCNGG	5 cut(s)	97, 118, 2015, 2177, 2314
BmtI	GCTAGC	1 cut(s)	2340
BoxI	GACNNNNGTC	1 cut(s)	596
BpiI	GAAGAC	2 cut(s)	1854, 2086
BpmI	CTGGAG	1 cut(s)	2613
Bpu10I	CCTNAGC	3 cut(s)	438, 483, 1400
Bpu1102I	GCTNAGC	1 cut(s)	532
BpuEI	CTTGAG	1 cut(s)	1797
BpuMI	CCSGG	1 cut(s)	2015
BsaAI	YACGTR	1 cut(s)	2449
BsaBI	GATNNNNATC	1 cut(s)	2022
BsaI	GGTCTC	1 cut(s)	2607
BsaJI	CCNNGG	3 cut(s)	375, 1186, 1242
Bsc4I	CCNNNNNNNGG	2 cut(s)	2020, 2401
Bse1I	ACTGG	5 cut(s)	289, 785, 1686, 2603, 2666
Bse3DI	GCAATG	3 cut(s)	501, 717, 1839
Bse8I	GATNNNNATC	1 cut(s)	2022
BseBI	CCWGG	4 cut(s)	97, 118, 2177, 2314
BseDI	CCNNGG	3 cut(s)	375, 1186, 1242
BseGI	GGATG	9 cut(s)	419, 777, 1401, 1690, 2299, 2322, 2494, 2552, 2605
BseJI	GATNNNNATC	1 cut(s)	2022
BseLI	CCNNNNNNNGG	2 cut(s)	2020, 2401
BseMI	GCAATG	3 cut(s)	501, 717, 1839
BseMII	CTCAG	5 cut(s)	429, 1801, 1880, 1890, 2078
BseNI	ACTGG	5 cut(s)	289, 785, 1686, 2603, 2666
BseRI	GAGGAG	1 cut(s)	2584
BseSI	GKGCMC	2 cut(s)	564, 1153
BseXI	GCAGC	6 cut(s)	43, 205, 920, 1292, 2483, 2562
BseYI	CCCAGC	2 cut(s)	863, 2356
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	7 cut(s)	276, 1111, 1417, 1515, 1874, 2175, 2394
BshNI	GGYRCC	1 cut(s)	1976
BsiHKAI	GWGCWC	4 cut(s)	529, 564, 1153, 1951
BsiSI	CCGG	1 cut(s)	2015
BslI	CCNNNNNNNGG	2 cut(s)	2020, 2401
BsmAI	GTCTC	6 cut(s)	141, 252, 1283, 1885, 2589, 2607
BsmI	GAATGC	4 cut(s)	170, 712, 1027, 1134
BsnI	GGCC	7 cut(s)	276, 1111, 1417, 1515, 1874, 2175, 2394
Bso31I	GGTCTC	1 cut(s)	2607
Bsp1286I	GDGCHC	4 cut(s)	529, 564, 1153, 1951
Bsp1720I	GCTNAGC	1 cut(s)	532
Bsp19I	CCATGG	1 cut(s)	1242
BspACI	CCGC	3 cut(s)	106, 974, 2052
BspANI	GGCC	7 cut(s)	276, 1111, 1417, 1515, 1874, 2175, 2394
BspCNI	CTCAG	5 cut(s)	430, 1800, 1881, 1889, 2079
BspFNI	CGCG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	3 cut(s)	373, 381, 1978
BspMAI	CTGCAG	1 cut(s)	1101
BspMI	ACCTGC	1 cut(s)	1893
BspOI	GCTAGC	1 cut(s)	2340
BspPI	GGATC	7 cut(s)	374, 387, 868, 1080, 1177, 2031, 2271
BspT107I	GGYRCC	1 cut(s)	1976
BspTNI	GGTCTC	1 cut(s)	2607
BsrDI	GCAATG	3 cut(s)	501, 717, 1839
BsrI	ACTGG	5 cut(s)	289, 785, 1686, 2603, 2666
BssECI	CCNNGG	3 cut(s)	375, 1186, 1242
BssSI	CACGAG	2 cut(s)	49, 2523
BssT1I	CCWWGG	1 cut(s)	1242
Bst2BI	CACGAG	2 cut(s)	49, 2523
Bst2UI	CCWGG	4 cut(s)	97, 118, 2177, 2314
Bst4CI	ACNGT	6 cut(s)	125, 922, 1155, 1231, 1896, 2247
Bst6I	CTCTTC	4 cut(s)	123, 144, 255, 2208
BstAPI	GCANNNNNTGC	4 cut(s)	716, 809, 1031, 1040
BstBAI	YACGTR	1 cut(s)	2449
BstC8I	GCNNGC	6 cut(s)	529, 560, 2173, 2338, 2365, 2541
BstDEI	CTNAG	9 cut(s)	11, 438, 483, 532, 1400, 1787, 1876, 1889, 2087
BstDSI	CCRYGG	2 cut(s)	1186, 1242
BstF5I	GGATG	9 cut(s)	419, 777, 1401, 1690, 2299, 2322, 2494, 2552, 2605
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	863
BstMAI	GTCTC	6 cut(s)	141, 252, 1283, 1885, 2589, 2607
BstMWI	GCNNNNNNNGC	9 cut(s)	227, 533, 716, 725, 809, 860, 1031, 1040, 2477
BstNI	CCWGG	4 cut(s)	97, 118, 2177, 2314
BstNSI	RCATGY	2 cut(s)	319, 2107
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSCI	CCNGG	5 cut(s)	95, 116, 2013, 2175, 2312
BstSFI	CTRYAG	1 cut(s)	1097
BstSLI	GKGCMC	2 cut(s)	564, 1153
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	6 cut(s)	43, 205, 920, 1292, 2483, 2562
BstV2I	GAAGAC	2 cut(s)	1854, 2086
BstX2I	RGATCY	9 cut(s)	379, 873, 1072, 1182, 1508, 1723, 2023, 2263, 2527
BstYI	RGATCY	9 cut(s)	379, 873, 1072, 1182, 1508, 1723, 2023, 2263, 2527
BsuRI	GGCC	7 cut(s)	276, 1111, 1417, 1515, 1874, 2175, 2394
BtgI	CCRYGG	2 cut(s)	1186, 1242
BtsCI	GGATG	9 cut(s)	419, 777, 1401, 1690, 2299, 2322, 2494, 2552, 2605
BtsI	GCAGTG	1 cut(s)	2351
BtsIMutI	CAGTG	6 cut(s)	121, 1679, 1795, 1901, 2084, 2351
BveI	ACCTGC	1 cut(s)	1893
Cac8I	GCNNGC	6 cut(s)	529, 560, 2173, 2338, 2365, 2541
CaiI	CAGNNNCTG	2 cut(s)	123, 1118
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	1 cut(s)	863
Cfr13I	GGNCC	5 cut(s)	274, 782, 1109, 2392, 2647
CseI	GACGC	1 cut(s)	881
Csp6I	GTAC	2 cut(s)	856, 1963
CviQI	GTAC	2 cut(s)	856, 1963
DdeI	CTNAG	9 cut(s)	11, 438, 483, 532, 1400, 1787, 1876, 1889, 2087
DraI	TTTAAA	2 cut(s)	42, 2419
Eam1104I	CTCTTC	4 cut(s)	123, 144, 255, 2208
EarI	CTCTTC	4 cut(s)	123, 144, 255, 2208
Ecl136II	GAGCTC	1 cut(s)	1949
Eco130I	CCWWGG	1 cut(s)	1242
Eco147I	AGGCCT	1 cut(s)	1417
Eco24I	GRGCYC	1 cut(s)	1951
Eco31I	GGTCTC	1 cut(s)	2607
Eco32I	GATATC	1 cut(s)	1323
Eco47I	GGWCC	2 cut(s)	782, 2647
Eco53kI	GAGCTC	1 cut(s)	1949
Eco57I	CTGAAG	1 cut(s)	1800
EcoICRI	GAGCTC	1 cut(s)	1949
EcoRII	CCWGG	4 cut(s)	95, 116, 2175, 2312
EcoRV	GATATC	1 cut(s)	1323
EcoT14I	CCWWGG	1 cut(s)	1242
EcoT22I	ATGCAT	5 cut(s)	661, 754, 1567, 2067, 2299
EcoT38I	GRGCYC	1 cut(s)	1951
ErhI	CCWWGG	1 cut(s)	1242
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FauI	CCCGC	1 cut(s)	2045
FauNDI	CATATG	3 cut(s)	389, 1567, 2342
Fnu4HI	GCNGC	6 cut(s)	57, 219, 909, 1281, 2472, 2551
FokI	GGATG	9 cut(s)	406, 784, 1408, 1697, 2306, 2329, 2501, 2559, 2592
FriOI	GRGCYC	1 cut(s)	1951
Fsp4HI	GCNGC	6 cut(s)	57, 219, 909, 1281, 2472, 2551
FspBI	CTAG	4 cut(s)	644, 1308, 2337, 2481
GlaI	GCGC	1 cut(s)	862
GluI	GCNGC	6 cut(s)	57, 219, 909, 1281, 2472, 2551
GsaI	CCCAGC	2 cut(s)	867, 2360
GsuI	CTGGAG	1 cut(s)	2613
HaeIII	GGCC	7 cut(s)	276, 1111, 1417, 1515, 1874, 2175, 2394
HapII	CCGG	1 cut(s)	2015
HgaI	GACGC	1 cut(s)	881
HhaI	GCGC	1 cut(s)	863
Hin6I	GCGC	1 cut(s)	861
HinP1I	GCGC	1 cut(s)	861
HindIII	AAGCTT	1 cut(s)	1271
HinfI	GANTC	6 cut(s)	450, 738, 977, 1115, 1738, 2371
HpaII	CCGG	1 cut(s)	2015
HphI	GGTGA	5 cut(s)	353, 1064, 1720, 1924, 2464
Hpy166II	GTNNAC	5 cut(s)	562, 1151, 1679, 1882, 2037
Hpy188I	TCNGA	5 cut(s)	80, 379, 897, 1611, 1717
Hpy188III	TCNNGA	5 cut(s)	423, 458, 582, 1002, 2609
Hpy8I	GTNNAC	5 cut(s)	562, 1151, 1679, 1882, 2037
Hpy99I	CGWCG	1 cut(s)	897
HpyAV	CCTTC	4 cut(s)	1400, 1859, 2064, 2180
HpyCH4III	ACNGT	6 cut(s)	125, 922, 1155, 1231, 1896, 2247
HpyCH4IV	ACGT	2 cut(s)	1589, 2448
HpyF10VI	GCNNNNNNNGC	9 cut(s)	227, 533, 716, 725, 809, 860, 1031, 1040, 2477
HpyF3I	CTNAG	9 cut(s)	11, 438, 483, 532, 1400, 1787, 1876, 1889, 2087
HpySE526I	ACGT	2 cut(s)	1589, 2448
HspAI	GCGC	1 cut(s)	861
LmnI	GCTCC	2 cut(s)	99, 1946
Lsp1109I	GCAGC	6 cut(s)	43, 205, 920, 1292, 2483, 2562
MaeI	CTAG	4 cut(s)	644, 1308, 2337, 2481
MaeII	ACGT	2 cut(s)	1589, 2448
MaeIII	GTNAC	8 cut(s)	341, 496, 916, 1120, 1155, 1580, 1636, 1803
MflI	RGATCY	9 cut(s)	379, 873, 1072, 1182, 1508, 1723, 2023, 2263, 2527
MhlI	GDGCHC	4 cut(s)	529, 564, 1153, 1951
MlyI	GAGTC	2 cut(s)	444, 2365
MmeI	TCCRAC	5 cut(s)	586, 749, 875, 1213, 1935
Mph1103I	ATGCAT	5 cut(s)	661, 754, 1567, 2067, 2299
MroXI	GAANNNNTTC	2 cut(s)	70, 2217
MslI	CAYNNNNRTG	4 cut(s)	258, 567, 882, 1905
MspA1I	CMGCKG	1 cut(s)	2553
MspI	CCGG	1 cut(s)	2015
MspR9I	CCNGG	5 cut(s)	97, 118, 2015, 2177, 2314
Mva1269I	GAATGC	4 cut(s)	170, 712, 1027, 1134
MvaI	CCWGG	4 cut(s)	97, 118, 2177, 2314
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	9 cut(s)	227, 533, 716, 725, 809, 860, 1031, 1040, 2477
NciI	CCSGG	1 cut(s)	2015
NcoI	CCATGG	1 cut(s)	1242
NdeI	CATATG	3 cut(s)	389, 1567, 2342
NheI	GCTAGC	1 cut(s)	2336
NlaIV	GGNNCC	3 cut(s)	373, 381, 1978
NmuCI	GTSAC	1 cut(s)	341
NsiI	ATGCAT	5 cut(s)	661, 754, 1567, 2067, 2299
NspI	RCATGY	2 cut(s)	319, 2107
OliI	CACNNNNGTG	1 cut(s)	567
PagI	TCATGA	1 cut(s)	457
PaqCI	CACCTGC	1 cut(s)	1893
PceI	AGGCCT	1 cut(s)	1417
PciI	ACATGT	1 cut(s)	315
PctI	GAATGC	4 cut(s)	170, 712, 1027, 1134
PdmI	GAANNNNTTC	2 cut(s)	70, 2217
PfeI	GAWTC	4 cut(s)	738, 977, 1115, 1738
PflFI	GACNNNGTC	1 cut(s)	1896
PfoI	TCCNGGA	1 cut(s)	2312
PkrI	GCNGC	6 cut(s)	58, 220, 910, 1282, 2473, 2552
PleI	GAGTC	2 cut(s)	444, 2365
PpsI	GAGTC	2 cut(s)	444, 2365
Ppu21I	YACGTR	1 cut(s)	2449
PscI	ACATGT	1 cut(s)	315
PshAI	GACNNNNGTC	1 cut(s)	596
PsiI	TTATAA	2 cut(s)	29, 1995
Psp124BI	GAGCTC	1 cut(s)	1951
Psp6I	CCWGG	4 cut(s)	95, 116, 2175, 2312
PspFI	CCCAGC	2 cut(s)	863, 2356
PspGI	CCWGG	4 cut(s)	95, 116, 2175, 2312
PspN4I	GGNNCC	3 cut(s)	373, 381, 1978
PspPI	GGNCC	5 cut(s)	274, 782, 1109, 2392, 2647
PstI	CTGCAG	1 cut(s)	1101
PstNI	CAGNNNCTG	2 cut(s)	123, 1118
PsuI	RGATCY	9 cut(s)	379, 873, 1072, 1182, 1508, 1723, 2023, 2263, 2527
PsyI	GACNNNGTC	1 cut(s)	1896
PvuII	CAGCTG	1 cut(s)	2553
RsaI	GTAC	2 cut(s)	857, 1964
RsaNI	GTAC	2 cut(s)	856, 1963
RseI	CAYNNNNRTG	4 cut(s)	258, 567, 882, 1905
SacI	GAGCTC	1 cut(s)	1951
SatI	GCNGC	6 cut(s)	57, 219, 909, 1281, 2472, 2551
Sau96I	GGNCC	5 cut(s)	274, 782, 1109, 2392, 2647
SchI	GAGTC	2 cut(s)	444, 2365
ScrFI	CCNGG	5 cut(s)	97, 118, 2015, 2177, 2314
SduI	GDGCHC	4 cut(s)	529, 564, 1153, 1951
SfcI	CTRYAG	1 cut(s)	1097
SinI	GGWCC	2 cut(s)	782, 2647
SmiMI	CAYNNNNRTG	4 cut(s)	258, 567, 882, 1905
SmlI	CTYRAG	1 cut(s)	1812
SmoI	CTYRAG	1 cut(s)	1812
SseBI	AGGCCT	1 cut(s)	1417
SsiI	CCGC	3 cut(s)	106, 974, 2052
SspI	AATATT	4 cut(s)	18, 1603, 2437, 2581
SspMI	CTAG	4 cut(s)	644, 1308, 2337, 2481
SstI	GAGCTC	1 cut(s)	1951
StuI	AGGCCT	1 cut(s)	1417
StyD4I	CCNGG	5 cut(s)	95, 116, 2013, 2175, 2312
StyI	CCWWGG	1 cut(s)	1242
TaaI	ACNGT	6 cut(s)	125, 922, 1155, 1231, 1896, 2247
TaiI	ACGT	2 cut(s)	1592, 2451
TaqI	TCGA	3 cut(s)	1201, 1750, 2207
TfiI	GAWTC	4 cut(s)	738, 977, 1115, 1738
TscAI	CASTG	6 cut(s)	128, 1686, 1795, 1901, 2091, 2358
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	6 cut(s)	56, 218, 908, 1280, 2471, 2550
Tsp45I	GTSAC	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	1787
TspRI	CASTG	6 cut(s)	128, 1686, 1795, 1901, 2091, 2358
Tth111I	GACNNNGTC	1 cut(s)	1896
VneI	GTGCAC	2 cut(s)	560, 1149
VpaK11BI	GGWCC	2 cut(s)	782, 2647
XapI	RAATTY	2 cut(s)	37, 1630
XceI	RCATGY	2 cut(s)	319, 2107
XmnI	GAANNNNTTC	2 cut(s)	70, 2217
XspI	CTAG	4 cut(s)	644, 1308, 2337, 2481
Zsp2I	ATGCAT	5 cut(s)	661, 754, 1567, 2067, 2299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.