Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008664

Physical Location & Seq

Genomic Coordinates Forward (+)

11882516 .. 11887133

Gene Structure 4618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G127300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2667 bp

ATGCTGAAATTTTTTAACGTTTCCGACAAAAATCAAAGATGCACGAGAGCTGTTTGTGGATATGCTTCAACCAGATTTCACAACATAATCAGGAGCTACAGCATACATGTCAGACGTAATGAAACGTTGTATCTTCTCCTTCAAAGTTGTCAAAGTTCGTCTGGGTTTAAACCCAATTACCAAGTATTATCAGCCATTCTCAAATCCTGTGCTGCCCTCTTAGCCATCAACTTTGGGAAAGCTCTTCATGGTTATGTTGTCAAACAAGGCCATCTTTCCTGCCACTCTATCTCTAAAGCACTGCTTAACATGTATGCCAAATGTGCTGCATTGGGTGACTGCAAAACACTTTTTGGTCAAATGGGTTACTCGGATCCTGTCATTTGGAACATTGTCTTATCTGGGTTTTCTGCATCTCGAAATTATGATGCTGAGGTAATGAGATTGTTTCATGAAATGCGTGTAGATGGGAAGGCTAAACCCACTTCTGTTACCATTGCTATCTTTCTACCTGTGTGTGCTCGGTTAGGGGATTTGCATGCAGGGAAGAGCGTGCACTCTTATGTGATGAAATCTGGACTGGAAAAAGATGTCCTTGTTGGAAATGCTCTTATATCAATGTATTCAAAATGTGGGCTAGTTTCTGGTGATGCCTATGCTGTGTTTAATAGCATTACTGACAAAGATGTCGTTTCATGGAATGCAATAATTGCAGGGTTTGCAGAAAATAGTTTCATAAATGATGCATACAAGTTATTCAGTTGGATGCTCAAAGGACCAGTGGAACCAAATTATGCAACTATTGCAAATATTCTGGCCGTTTGTGCTTCTTTAGATAAAGACGTTGCCTACTGCTCTGGGAGAGAGATCCATTGTTATGTGCTGCGCCGGAATGAATTGGCAGCAGATGTTTCGGTGTGCAATGCTTTGGTAAGTTTCTATTTACAACTTGGACGAATGCAAGAAGCAGAATCCTTGTTCCACAGGATGAAATCAAGAGATTTGGTTTCATGGAATGCAATTATTGCAGGATATGCATCAAATCGTGAGTGGTCAAAAGCATTGGAGTTGTTTGGAAAATTACTCGCTCTGCAGATGATCAGGCCGGATTCTGTAAGTGTAGTCAGCATTCTTCCTGCTTGTGCACATTTACAAAACTTGGAGGTGGGGAAAAAGATCCATGGGTACATTCTTCGACATCCTAGCCTATTTGAGGCAACAGCGGTTGGAAATGCCATGGTTAGTTTTTATTCAAAATGCTACAAAATAGAAGCAGCTTTCAAGACTTTTTTGATGATTTTGAGGAGAGATTTGATATCATGGAATACCATGCTAGTTGCCTTCGCAGAGATTGGGCATAGTACAGAGTTCCTCAACCTATTAGATGATATGCTAAGGGACGGCATGAGGCCTGACCATATAACCATCTTGACCATAATACAATTTTGTGCTGCAATTTTGAGAGTAGGAAAGGTTAAAGAAATTCATAGCTACTCAATTAGGGCTGGGTTTTTGTGTGATAATATTGAGCCTACTATTGCAAATGCAATCCTGGATGCATATGCCAAATGTGGTAACATGAAGTATGCATTCAACATTTTTCAGAGTTTATTGGGTAAAAGGAATTTGGTTACTTGCAATTCAATGATTTCAGCTTATGTAAATTGTGGGTCACGCGATGATGCATATATCATATTTAACAGCATGTCTGAAACAGATCTCACCACTTGGAATCTAATGGTTCGAGCTTATGCTGAAAATGATTGTCCTGCTCAAGCTCTCAGCCTGTTCCTTGAGTTACAAGCTCAAGGAATGAAGCCTGATGCGATGACCATTATGAGCCTCCTTCCTGTATCTGCTCAAATGGCCTCAGTCCACCTGCTGAGGCAGTGTCATGGATATGTGGTGAGAGCATGTCTTGATGACTTGTGCTTGAAGGGAGCTCTGTTAGATATGTATGCAAAATGTGGTTCCATAGTATGTGCTTATAAGCTTTTTCAGTCAAGCCTGCACAAGGATCTGGTTATGTTTACAGCTATGGTTGGTGGGTTTGCCATGCATGGTAGGGGAGAAGAAGCACTGAAGGTCTTCTTTCATATGCTGGACTTGGGTGTCAAGCCAGATAATGTTATTATTACTGCTGTTTTATCAGCTTGCAGTCATGCTGGCCTGGTGAATGAAGGGTTGAAGATATTTTATTCAATAGAAGAGATTCATGGGGTCAAACCAACAATGGAACAGTATGCTTGTGTGGTGGATCTCCTTGCTAGAGGTGGACGAATTGAGGATGCATTTTCTTTTGTGTCGAGGATGCCTATTGAAGCTAATGCTAACATATGGGGAACTCTGCTGGGTGCTTGCAGGACTCATCATGAGGTGGAATTGGGCCGTGTTGTGGCAGATCATCTCTTTGAAATTGAAGCTAATAATATTGGGAACTATGTGGTTATGTCAAATCTATATGCAGCAGAAGCTAGATGGGATGGGGTCATGGAGGTAAGAAGGATGATGAGAACTAGAGACATAAAAAAGCCAGCGGGATGCAGCTGGATAGAGGTGGAGAGGAGGAAGAACCTTTTTATGGCTGGAGACTGGTCCCATCCAGAAAGAAGCATTATCTACAGTACATTAAGTGCATTGGACCAACAAATGAAAGAGCCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1900864 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

889

Amino Acids

98.83

Weight (kDa)

8.35

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490
fragaria_vesca	FvH4_1g29890 FvH4_1g29890 FvH4_1g29890
malus_domestica	MD02G1212500.v1.1
prunus_persica	Prupe.3G127300_v2.0.a1
pyrus_communis	pycom02g17620
rosa_laevigata	RLG00000022567
rosa_multiflora	Rmu_sc0005781.1_g000010
rosa_roxburghii	Rroxscaffold_6G00389610
rosa_rugosa	Rorug03G0279300
rosa_samantha	Rh3AG326200 Rh3BG362500 Rh3CG358600 Rh3DG361900
rosa_wichuraiana	Rw3G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1989
AarI	CACCTGC	1 cut(s)	1887
AasI	GACNNNNNNGTC	2 cut(s)	686, 2111
Acc36I	ACCTGC	1 cut(s)	1887
AccII	CGCG	1 cut(s)	1677
AciI	CCGC	2 cut(s)	1223, 2537
AclI	AACGTT	2 cut(s)	18, 125
AclWI	GGATC	6 cut(s)	368, 381, 862, 1171, 2025, 2265
AcoI	YGGCCR	1 cut(s)	816
AcsI	RAATTY	3 cut(s)	8, 1482, 1624
AcuI	CTGAAG	1 cut(s)	2102
AfaI	GTAC	3 cut(s)	1187, 1363, 2626
AfiI	CCNNNNNNNGG	4 cut(s)	1213, 2014, 2395, 2581
AflIII	ACRYGT	2 cut(s)	106, 309
AjnI	CCWGG	2 cut(s)	1551, 2169
Alw21I	GWGCWC	4 cut(s)	523, 558, 1147, 1945
Alw26I	GTCTC	2 cut(s)	2514, 2583
Alw44I	GTGCAC	2 cut(s)	554, 1143
AlwI	GGATC	6 cut(s)	368, 381, 862, 1171, 2025, 2265
AoxI	GGCC	7 cut(s)	268, 816, 1103, 1409, 1866, 2167, 2386
ApaLI	GTGCAC	2 cut(s)	554, 1143
ApeKI	GCWGC	8 cut(s)	212, 326, 883, 902, 1274, 1451, 2465, 2544
ApoI	RAATTY	3 cut(s)	8, 1482, 1624
Asp700I	GAANNNNTTC	2 cut(s)	2087, 2211
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	4 cut(s)	776, 2386, 2595, 2641
AsuHPI	GGTGA	5 cut(s)	347, 659, 1714, 1918, 2185
AvaII	GGWCC	3 cut(s)	776, 2595, 2641
BaeGI	GKGCMC	2 cut(s)	558, 1147
BamHI	GGATCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	1945
BauI	CACGAG	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	2080
Bbv12I	GWGCWC	4 cut(s)	523, 558, 1147, 1945
BbvCI	CCTCAGC	2 cut(s)	432, 1883
BbvI	GCAGC	8 cut(s)	199, 313, 870, 914, 1286, 1438, 2477, 2556
BccI	CCATC	7 cut(s)	233, 279, 461, 1433, 2472, 2477, 2607
BceAI	ACGGC	3 cut(s)	803, 1417, 2373
BcgI	CGANNNNNNTGC	2 cut(s)	894, 928
BciT130I	CCWGG	2 cut(s)	1553, 2171
BclI	TGATCA	1 cut(s)	1098
BcoDI	GTCTC	2 cut(s)	2514, 2583
BfaI	CTAG	6 cut(s)	638, 1203, 1334, 2268, 2475, 2517
BfmI	CTRYAG	3 cut(s)	97, 1091, 2620
BfuAI	ACCTGC	1 cut(s)	1887
BglII	AGATCT	1 cut(s)	1717
BisI	GCNGC	8 cut(s)	213, 327, 884, 903, 1275, 1452, 2466, 2545
BlsI	GCNGC	8 cut(s)	214, 328, 885, 904, 1276, 1453, 2467, 2546
Bme1390I	CCNGG	2 cut(s)	1553, 2171
Bme18I	GGWCC	3 cut(s)	776, 2595, 2641
BmgT120I	GGNCC	4 cut(s)	776, 2386, 2595, 2641
BmiI	GGNNCC	4 cut(s)	375, 786, 1972, 2597
BmrFI	CCNGG	2 cut(s)	1553, 2171
BpiI	GAAGAC	1 cut(s)	2080
BpmI	CTGGAG	1 cut(s)	2607
Bpu10I	CCTNAGC	3 cut(s)	432, 1394, 1883
BpuEI	CTTGAG	3 cut(s)	1758, 1791, 1814
BsaBI	GATNNNNATC	1 cut(s)	1036
BsaJI	CCNNGG	2 cut(s)	1180, 1236
Bsc4I	CCNNNNNNNGG	4 cut(s)	1213, 2014, 2395, 2581
Bse1I	ACTGG	4 cut(s)	585, 779, 2597, 2660
Bse3DI	GCAATG	2 cut(s)	495, 928
Bse8I	GATNNNNATC	1 cut(s)	1036
BseBI	CCWGG	2 cut(s)	1553, 2171
BseDI	CCNNGG	2 cut(s)	1180, 1236
BseJI	GATNNNNATC	1 cut(s)	1036
BseLI	CCNNNNNNNGG	4 cut(s)	1213, 2014, 2395, 2581
BseMI	GCAATG	2 cut(s)	495, 928
BseMII	CTCAG	4 cut(s)	423, 1795, 1874, 1884
BseNI	ACTGG	4 cut(s)	585, 779, 2597, 2660
BseRI	GAGGAG	2 cut(s)	1318, 2578
BseSI	GKGCMC	2 cut(s)	558, 1147
BseXI	GCAGC	8 cut(s)	199, 313, 870, 914, 1286, 1438, 2477, 2556
BseYI	CCCAGC	2 cut(s)	1505, 2350
BsgI	GTGCAG	1 cut(s)	1994
Bsh1236I	CGCG	1 cut(s)	1677
BshFI	GGCC	7 cut(s)	270, 818, 1105, 1411, 1868, 2169, 2388
BsiHKAI	GWGCWC	4 cut(s)	523, 558, 1147, 1945
BsiSI	CCGG	2 cut(s)	889, 1106
BslFI	GGGAC	2 cut(s)	1412, 2581
BslI	CCNNNNNNNGG	4 cut(s)	1213, 2014, 2395, 2581
BsmAI	GTCTC	2 cut(s)	2514, 2583
BsmFI	GGGAC	2 cut(s)	1412, 2581
BsmI	GAATGC	5 cut(s)	706, 963, 1021, 1128, 1589
BsnI	GGCC	7 cut(s)	270, 818, 1105, 1411, 1868, 2169, 2388
Bsp1286I	GDGCHC	4 cut(s)	523, 558, 1147, 1945
Bsp143I	GATC	8 cut(s)	373, 867, 1098, 1176, 1717, 2017, 2257, 2401
Bsp19I	CCATGG	2 cut(s)	1180, 1236
BspACI	CCGC	2 cut(s)	1223, 2537
BspANI	GGCC	7 cut(s)	270, 818, 1105, 1411, 1868, 2169, 2388
BspCNI	CTCAG	4 cut(s)	424, 1794, 1875, 1883
BspFNI	CGCG	1 cut(s)	1677
BspHI	TCATGA	2 cut(s)	451, 2371
BspLI	GGNNCC	4 cut(s)	375, 786, 1972, 2597
BspMAI	CTGCAG	1 cut(s)	1095
BspMI	ACCTGC	1 cut(s)	1887
BspPI	GGATC	6 cut(s)	368, 381, 862, 1171, 2025, 2265
BspQI	GCTCTTC	2 cut(s)	249, 542
BsrDI	GCAATG	2 cut(s)	495, 928
BsrI	ACTGG	4 cut(s)	585, 779, 2597, 2660
BssECI	CCNNGG	2 cut(s)	1180, 1236
BssMI	GATC	8 cut(s)	373, 867, 1098, 1176, 1717, 2017, 2257, 2401
BssSI	CACGAG	1 cut(s)	43
BssT1I	CCWWGG	2 cut(s)	1180, 1236
Bst2BI	CACGAG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	1553, 2171
Bst4CI	ACNGT	2 cut(s)	2241, 2624
Bst6I	CTCTTC	3 cut(s)	249, 542, 2202
BstAPI	GCANNNNNTGC	5 cut(s)	710, 719, 803, 1025, 1034
BstC8I	GCNNGC	7 cut(s)	540, 554, 2009, 2155, 2167, 2359, 2535
BstDEI	CTNAG	6 cut(s)	220, 432, 1394, 1781, 1870, 1883
BstDSI	CCRYGG	2 cut(s)	1180, 1236
BstENI	CCTNNNNNAGG	2 cut(s)	1211, 2012
BstFNI	CGCG	1 cut(s)	1677
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	8 cut(s)	376, 870, 1101, 1179, 1720, 2020, 2260, 2404
BstMAI	GTCTC	2 cut(s)	2514, 2583
BstMBI	GATC	8 cut(s)	373, 867, 1098, 1176, 1717, 2017, 2257, 2401
BstNI	CCWGG	2 cut(s)	1553, 2171
BstNSI	RCATGY	5 cut(s)	110, 313, 542, 1708, 1917
BstSCI	CCNGG	2 cut(s)	1551, 2169
BstSFI	CTRYAG	3 cut(s)	97, 1091, 2620
BstSLI	GKGCMC	2 cut(s)	558, 1147
BstUI	CGCG	1 cut(s)	1677
BstV1I	GCAGC	8 cut(s)	199, 313, 870, 914, 1286, 1438, 2477, 2556
BstV2I	GAAGAC	1 cut(s)	2080
BstX2I	RGATCY	6 cut(s)	373, 867, 1176, 1717, 2017, 2257
BstYI	RGATCY	6 cut(s)	373, 867, 1176, 1717, 2017, 2257
BsuRI	GGCC	7 cut(s)	270, 818, 1105, 1411, 1868, 2169, 2388
BtgI	CCRYGG	2 cut(s)	1180, 1236
BtgZI	GCGATG	2 cut(s)	1692, 1841
BtsI	GCAGTG	2 cut(s)	299, 1895
BtsIMutI	CAGTG	4 cut(s)	299, 786, 1895, 2078
BveI	ACCTGC	1 cut(s)	1887
Cac8I	GCNNGC	7 cut(s)	540, 554, 2009, 2155, 2167, 2359, 2535
CciI	TCATGA	2 cut(s)	451, 2371
CfoI	GCGC	1 cut(s)	888
Cfr13I	GGNCC	4 cut(s)	776, 2386, 2595, 2641
Csp6I	GTAC	3 cut(s)	1186, 1362, 2625
CviQI	GTAC	3 cut(s)	1186, 1362, 2625
DdeI	CTNAG	6 cut(s)	220, 432, 1394, 1781, 1870, 1883
DpnI	GATC	8 cut(s)	375, 869, 1100, 1178, 1719, 2019, 2259, 2403
DpnII	GATC	8 cut(s)	373, 867, 1098, 1176, 1717, 2017, 2257, 2401
DraI	TTTAAA	1 cut(s)	169
DrdI	GACNNNNNNGTC	2 cut(s)	686, 2111
DseDI	GACNNNNNNGTC	2 cut(s)	686, 2111
EaeI	YGGCCR	1 cut(s)	816
Eam1104I	CTCTTC	3 cut(s)	249, 542, 2202
EarI	CTCTTC	3 cut(s)	249, 542, 2202
Ecl136II	GAGCTC	1 cut(s)	1943
Eco130I	CCWWGG	2 cut(s)	1180, 1236
Eco147I	AGGCCT	1 cut(s)	1411
Eco24I	GRGCYC	1 cut(s)	1945
Eco32I	GATATC	1 cut(s)	1317
Eco47I	GGWCC	3 cut(s)	776, 2595, 2641
Eco53kI	GAGCTC	1 cut(s)	1943
Eco57I	CTGAAG	1 cut(s)	2102
EcoICRI	GAGCTC	1 cut(s)	1943
EcoNI	CCTNNNNNAGG	2 cut(s)	1211, 2012
EcoRII	CCWGG	2 cut(s)	1551, 2169
EcoRV	GATATC	1 cut(s)	1317
EcoT14I	CCWWGG	2 cut(s)	1180, 1236
EcoT22I	ATGCAT	7 cut(s)	748, 1039, 1561, 1591, 1687, 2061, 2293
EcoT38I	GRGCYC	1 cut(s)	1945
ErhI	CCWWGG	2 cut(s)	1180, 1236
FalI	AAGNNNNNCTT	8 cut(s)	258, 290, 288, 320, 579, 611, 2075, 2107
FaqI	GGGAC	2 cut(s)	1412, 2581
FauI	CCCGC	1 cut(s)	2530
FauNDI	CATATG	3 cut(s)	1561, 2097, 2336
FbaI	TGATCA	1 cut(s)	1098
Fnu4HI	GCNGC	8 cut(s)	213, 327, 884, 903, 1275, 1452, 2466, 2545
FriOI	GRGCYC	1 cut(s)	1945
Fsp4HI	GCNGC	8 cut(s)	213, 327, 884, 903, 1275, 1452, 2466, 2545
FspBI	CTAG	6 cut(s)	638, 1203, 1334, 2268, 2475, 2517
GlaI	GCGC	1 cut(s)	887
GluI	GCNGC	8 cut(s)	213, 327, 884, 903, 1275, 1452, 2466, 2545
GsaI	CCCAGC	2 cut(s)	1509, 2354
GsuI	CTGGAG	1 cut(s)	2607
HaeIII	GGCC	7 cut(s)	270, 818, 1105, 1411, 1868, 2169, 2388
HapII	CCGG	2 cut(s)	889, 1106
HhaI	GCGC	1 cut(s)	888
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HindIII	AAGCTT	1 cut(s)	1991
HinfI	GANTC	5 cut(s)	971, 1109, 1732, 2212, 2365
HpaII	CCGG	2 cut(s)	889, 1106
HphI	GGTGA	5 cut(s)	347, 659, 1714, 1918, 2185
Hpy166II	GTNNAC	5 cut(s)	556, 1145, 1876, 2031, 2276
Hpy188I	TCNGA	5 cut(s)	25, 113, 373, 1605, 1711
Hpy8I	GTNNAC	5 cut(s)	556, 1145, 1876, 2031, 2276
HpyAV	CCTTC	8 cut(s)	149, 466, 1351, 1856, 1930, 2077, 2174, 2496
HpyCH4III	ACNGT	2 cut(s)	2241, 2624
HpyCH4IV	ACGT	4 cut(s)	18, 115, 125, 843
HpyF3I	CTNAG	6 cut(s)	220, 432, 1394, 1781, 1870, 1883
HpySE526I	ACGT	4 cut(s)	18, 115, 125, 843
HspAI	GCGC	1 cut(s)	886
Ksp22I	TGATCA	1 cut(s)	1098
Kzo9I	GATC	8 cut(s)	373, 867, 1098, 1176, 1717, 2017, 2257, 2401
LguI	GCTCTTC	2 cut(s)	249, 542
LmnI	GCTCC	2 cut(s)	93, 1940
Lsp1109I	GCAGC	8 cut(s)	199, 313, 870, 914, 1286, 1438, 2477, 2556
MaeI	CTAG	6 cut(s)	638, 1203, 1334, 2268, 2475, 2517
MaeII	ACGT	4 cut(s)	18, 115, 125, 843
MaeIII	GTNAC	7 cut(s)	335, 365, 490, 1574, 1630, 1671, 1797
MalI	GATC	8 cut(s)	375, 869, 1100, 1178, 1719, 2019, 2259, 2403
MboI	GATC	8 cut(s)	373, 867, 1098, 1176, 1717, 2017, 2257, 2401
MflI	RGATCY	6 cut(s)	373, 867, 1176, 1717, 2017, 2257
MhlI	GDGCHC	4 cut(s)	523, 558, 1147, 1945
MlyI	GAGTC	1 cut(s)	2359
MmeI	TCCRAC	4 cut(s)	48, 580, 743, 1207
Mph1103I	ATGCAT	7 cut(s)	748, 1039, 1561, 1591, 1687, 2061, 2293
MroXI	GAANNNNTTC	2 cut(s)	2087, 2211
MseI	TTAA	8 cut(s)	15, 168, 306, 666, 1476, 1698, 2630, 2665
MslI	CAYNNNNRTG	4 cut(s)	252, 561, 876, 1899
MspA1I	CMGCKG	3 cut(s)	1223, 2537, 2547
MspI	CCGG	2 cut(s)	889, 1106
MspR9I	CCNGG	2 cut(s)	1553, 2171
MssI	GTTTAAAC	1 cut(s)	169
Mva1269I	GAATGC	5 cut(s)	706, 963, 1021, 1128, 1589
MvaI	CCWGG	2 cut(s)	1553, 2171
MvnI	CGCG	1 cut(s)	1677
NcoI	CCATGG	2 cut(s)	1180, 1236
NdeI	CATATG	3 cut(s)	1561, 2097, 2336
NdeII	GATC	8 cut(s)	373, 867, 1098, 1176, 1717, 2017, 2257, 2401
NlaIV	GGNNCC	4 cut(s)	375, 786, 1972, 2597
NmuCI	GTSAC	2 cut(s)	335, 1671
NsiI	ATGCAT	7 cut(s)	748, 1039, 1561, 1591, 1687, 2061, 2293
NspI	RCATGY	5 cut(s)	110, 313, 542, 1708, 1917
PaeI	GCATGC	1 cut(s)	542
PagI	TCATGA	2 cut(s)	451, 2371
PaqCI	CACCTGC	1 cut(s)	1887
PceI	AGGCCT	1 cut(s)	1411
PciI	ACATGT	2 cut(s)	106, 309
PciSI	GCTCTTC	2 cut(s)	249, 542
PctI	GAATGC	5 cut(s)	706, 963, 1021, 1128, 1589
PdmI	GAANNNNTTC	2 cut(s)	2087, 2211
PfeI	GAWTC	4 cut(s)	971, 1109, 1732, 2212
PfoI	TCCNGGA	1 cut(s)	1551
PkrI	GCNGC	8 cut(s)	214, 328, 885, 904, 1276, 1453, 2467, 2546
PleI	GAGTC	1 cut(s)	2359
PmeI	GTTTAAAC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	2359
PscI	ACATGT	2 cut(s)	106, 309
PsiI	TTATAA	1 cut(s)	1989
Psp124BI	GAGCTC	1 cut(s)	1945
Psp1406I	AACGTT	2 cut(s)	18, 125
Psp6I	CCWGG	2 cut(s)	1551, 2169
PspFI	CCCAGC	2 cut(s)	1505, 2350
PspGI	CCWGG	2 cut(s)	1551, 2169
PspN4I	GGNNCC	4 cut(s)	375, 786, 1972, 2597
PspPI	GGNCC	4 cut(s)	776, 2386, 2595, 2641
PstI	CTGCAG	1 cut(s)	1095
PsuI	RGATCY	6 cut(s)	373, 867, 1176, 1717, 2017, 2257
PvuII	CAGCTG	1 cut(s)	2547
RsaI	GTAC	3 cut(s)	1187, 1363, 2626
RsaNI	GTAC	3 cut(s)	1186, 1362, 2625
RseI	CAYNNNNRTG	4 cut(s)	252, 561, 876, 1899
SacI	GAGCTC	1 cut(s)	1945
SapI	GCTCTTC	2 cut(s)	249, 542
SaqAI	TTAA	8 cut(s)	15, 168, 306, 666, 1476, 1698, 2630, 2665
SatI	GCNGC	8 cut(s)	213, 327, 884, 903, 1275, 1452, 2466, 2545
Sau3AI	GATC	8 cut(s)	373, 867, 1098, 1176, 1717, 2017, 2257, 2401
Sau96I	GGNCC	4 cut(s)	776, 2386, 2595, 2641
SchI	GAGTC	1 cut(s)	2359
ScrFI	CCNGG	2 cut(s)	1553, 2171
SduI	GDGCHC	4 cut(s)	523, 558, 1147, 1945
SfcI	CTRYAG	3 cut(s)	97, 1091, 2620
SinI	GGWCC	3 cut(s)	776, 2595, 2641
SmiMI	CAYNNNNRTG	4 cut(s)	252, 561, 876, 1899
SmlI	CTYRAG	3 cut(s)	1773, 1793, 1806
SmoI	CTYRAG	3 cut(s)	1773, 1793, 1806
SphI	GCATGC	1 cut(s)	542
SseBI	AGGCCT	1 cut(s)	1411
SsiI	CCGC	2 cut(s)	1223, 2537
SspI	AATATT	3 cut(s)	811, 1525, 2431
SspMI	CTAG	6 cut(s)	638, 1203, 1334, 2268, 2475, 2517
SstI	GAGCTC	1 cut(s)	1945
StuI	AGGCCT	1 cut(s)	1411
StyD4I	CCNGG	2 cut(s)	1551, 2169
StyI	CCWWGG	2 cut(s)	1180, 1236
TaaI	ACNGT	2 cut(s)	2241, 2624
TaiI	ACGT	4 cut(s)	21, 118, 128, 846
TaqI	TCGA	4 cut(s)	418, 1195, 1744, 2306
TatI	WGTACW	2 cut(s)	1361, 2624
TfiI	GAWTC	4 cut(s)	971, 1109, 1732, 2212
Tru1I	TTAA	8 cut(s)	15, 168, 306, 666, 1476, 1698, 2630, 2665
Tru9I	TTAA	8 cut(s)	15, 168, 306, 666, 1476, 1698, 2630, 2665
TscAI	CASTG	4 cut(s)	306, 786, 1895, 2085
TseFI	GTSAC	2 cut(s)	335, 1671
TseI	GCWGC	8 cut(s)	212, 326, 883, 902, 1274, 1451, 2465, 2544
Tsp45I	GTSAC	2 cut(s)	335, 1671
TspRI	CASTG	4 cut(s)	306, 786, 1895, 2085
VneI	GTGCAC	2 cut(s)	554, 1143
VpaK11BI	GGWCC	3 cut(s)	776, 2595, 2641
XagI	CCTNNNNNAGG	2 cut(s)	1211, 2012
XapI	RAATTY	3 cut(s)	8, 1482, 1624
XceI	RCATGY	5 cut(s)	110, 313, 542, 1708, 1917
XmnI	GAANNNNTTC	2 cut(s)	2087, 2211
XspI	CTAG	6 cut(s)	638, 1203, 1334, 2268, 2475, 2517
Zsp2I	ATGCAT	7 cut(s)	748, 1039, 1561, 1591, 1687, 2061, 2293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.