Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008664

Physical Location & Seq

Genomic Coordinates Forward (+)

42782490 .. 42785174

Gene Structure 2685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2685 bp

ATGCTGAGAAATTTTAATGCTTGTAATATATATTTAAAGCGTACAAGAGCTGCTTGTAGACATGTGTCACCCAGTTCTCGAAATTTTAAAAGGAGCTACTGCATAGATGACAGACATGATGAAGTGTTGCCTCTTCCACTTCGTAGTTCTCAAAGTTCTGGTCAGTTTAAACCCAATTACCAGGTATTAGCAGCCCTTCTCAAATCCTGTGCTGCCCTTTTAGCAATAAATTCCGGAAAAGCACTTCATGGTTATGTTTTCAAGCATGGTGATCTTTCATGCCTCTCTGTCTCGAAAGCACTGCTCAATATGTATGCCAAATGTGGTGCATTGGATGATTGCAATACACTCTTTGGTCAAATGTGTTACTCAGATTCTGTAATTTGGAACATTGTCTTATCTGGGTTTTCTGCATCTCGGAAGTACAATGGTGAGGTAATAAAGTTGTTTCATGAAATGCATGTAGGTGGGAAGGCTAAGCCGACTTCTGTTACCATTGCTACTGTTCTTCCGGTGTGTGCTCGCTTAGGGGATTTAGATATGGGGAAGAGTGTGCACACTTATGTGATTAAGTCTGGATTAGAAACAGATGTTCTTGTGGGAAATTCTCTGATATCTATGTATGCAAAATGTGGGCTAGTTTCTGATGATGCATATACTGTGTTCGATAACATCATTGACAAAGATGTCATTTCGTGGAATGCAATGATTGCAGGGTTTTCTGAGAATAGATTGATAAAAAAGGCATATGAGTTGTTCAGTTGGATGCTCAAAGGACCAATGGACCCAAATAATGCAACCATTGCAACTATTCTGCCCATTTGTGCTTCTTTAGATAATAATGCCTACTGGTCAGGGAGAGAGATTCATTGTTATGTTCTACGCCGGAGTGAACTAGCAGCAGATGTTTCAGTGTGCAATGCTTTGTTAAGTTTTTATTTACTTCTTGGACGAATAGAAAAAGCAGAATCTTTGTTCCACAGGATGAAATCAAGAGATTTGGTTTCATGGAATGCAATTATTGCAGGATATTCATCAAATGGTGAGTGGTTGAAAGCATTGGATTTGTTTCACAAACTAATCTCTTTACAGACGATGGGGCCAGACTCTGTAACTATTATCAGCATTCTGCCTGCTTGTGCACATTTAAAACTCTTGCATGTGGGGAGAAAGATCCATGGGTACATTCTTCGACATCCTAGGCTATACGAGTCTACAGCAGTTGGAAATGCCATGGTTAGTTTCTATGTGAAATGTGATAAAATTAGAGATGCTTATGAGACATTTTTCATGATGTCTAGGAGAGATTTGATATCGTGGAATACCATGCTAGTTGCCTTTGCAGGTATTGGCTATTCTACCAAGTTTGTGAACTTATTAAATGGGCTGCTTAAGGAAGGTATGATACCGGATCATTTTACCATCTTGACCATAGTTCAGTTTTGTTCTGCAGTATTGAGAGTAGAAAAGGTTAAAGAAGCTCATAGCTATTCAATTAAGGCTGGGCTTTTGTTGGATGATACTGAGCCTAATATTGGAAATGCGATACTTGATGCATACGCCAAATGTGGTAACATGTACTACGCATTCAAGATCTTTCAGAGTTTATCACAGAAAAGAGCGACATGCAATTCAATGATTTCAGCTTATGTGAATTGTGGATCGCATGATGATGCACAAATGGTATTTAACAGTATGTCTGAAACTGATCTCATCTCTTGGAATCTAATGGTTCGAGCTTATGCTGAAAATGATTGTCCTGCTGAAGCTGTTAATCTGTTTTATGAGTTACAAGCTCAAGGAATGAAGCCAGATGCAATGACCATTATGAGCCTCCTTCCTGTATCTGCTCAAATATCCTCAGTCCACCTGCTGAGGCAGTGTCATGGATATGTGGTGAGAGCTTTTCTTCATGACGTTTACTTGACGGGAGCTCTGTTAGATATGTATGCAAAATGCGGTGCCATAGTATGTGCTTATAAGCTGTTTCAGTGCAGCCTGCATAAGGATCTGGTTATGTATACAGCTATGATTGGTGGGTTTGCCATGCATGGTATGGGAGAGGAAGCACTTGGGGTCTTCTCTCATATGCTTGAGTTGGGTATAAAGCCTGATAATGTTATTATTACTGCTGTTTTATCTGCTTGCAGTCATGCTGGCCTTGTGAATGAAGGGCTGAAGATCTTTTATACCATAGAAGCGGTTTATGGTGTCAAACCAACTGTGGAACAGTATGCTTGTGTGGTGGATCTCCTTGGGAGAGGTGGGCGTGTTGATGATGCATTTTCTTTTGTGTCCAAGATGCCTATCGAAGCAAATGCCAACATATGGGGGACATTGCTGGGTGCTTGTAGAACTCATCATATGGTGGACTTGGGCCGTATTGTGGCAGATCATCTGTTTGAAATTGAAGTCGATAATATTGGGAACTATGTGGTGATGTCAAACTTATATGCATCAGAAGCTAGATGGGATAGGGTCATGGAGGTAAGACAGCTTATGAGGATAAGAGACTTGAAAAAGCCAGCTGGATGCAGTTGGATAGAAGTTGAGAGGAGTACAAACCGTTTTATAGCGGGAGACTTGTCCCATCCACAGAGAAGTATTATTTACAGTACATTGAGTTCATTGGACCAACAAATTAAAGAGCCAGTTTATTTAAGACTTGACACTAGAAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1900864 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

894

Amino Acids

99.55

Weight (kDa)

8.11

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	228 - 272	1.6e-09	PPR repeat family
PPR_2	PF13041	333 - 381	6.2e-06	PPR repeat family
PPR_2	PF13041	670 - 717	1e-07	PPR repeat family
PPR	PF01535	672 - 702	5.2e-07	PPR repeat
E_motif	PF20431	788 - 849	3.5e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490 AT5G08490
fragaria_vesca	FvH4_1g29890 FvH4_1g29890 FvH4_1g29890
malus_domestica	MD02G1212500.v1.1
prunus_persica	Prupe.3G127300_v2.0.a1
pyrus_communis	pycom02g17620
rosa_laevigata	RLG00000022567
rosa_multiflora	Rmu_sc0005781.1_g000010
rosa_roxburghii	Rroxscaffold_6G00389610
rosa_rugosa	Rorug03G0279300
rosa_samantha	Rh3AG326200 Rh3BG362500 Rh3CG358600 Rh3DG361900
rosa_wichuraiana	Rw3G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1980
AarI	CACCTGC	1 cut(s)	1878
AasI	GACNNNNNNGTC	1 cut(s)	686
Acc36I	ACCTGC	2 cut(s)	1334, 1878
AccB1I	GGYRCC	1 cut(s)	1961
AccB7I	CCANNNNNTGG	1 cut(s)	2328
AccI	GTMKAC	3 cut(s)	58, 1214, 2021
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	3 cut(s)	1959, 2201, 2576
AclWI	GGATC	5 cut(s)	1168, 1419, 1669, 2016, 2256
AcsI	RAATTY	4 cut(s)	10, 82, 229, 604
AcuI	CTGAAG	2 cut(s)	1785, 2198
AfaI	GTAC	6 cut(s)	43, 425, 1184, 1580, 2560, 2617
AfiI	CCNNNNNNNGG	4 cut(s)	1535, 2005, 2328, 2386
AflII	CTTAAG	1 cut(s)	1391
AflIII	ACRYGT	2 cut(s)	61, 1575
AgsI	TTSAA	8 cut(s)	262, 1054, 1494, 1591, 1635, 2405, 2411, 2518
AjnI	CCWGG	1 cut(s)	180
AleI	CACNNNNGTG	1 cut(s)	563
Alw21I	GWGCWC	4 cut(s)	523, 558, 1144, 1936
Alw26I	GTCTC	4 cut(s)	295, 1274, 2505, 2574
Alw44I	GTGCAC	2 cut(s)	554, 1140
AlwI	GGATC	5 cut(s)	1168, 1419, 1669, 2016, 2256
AlwNI	CAGNNNCTG	2 cut(s)	377, 1109
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	3 cut(s)	1100, 2158, 2377
ApaLI	GTGCAC	2 cut(s)	554, 1140
ApeKI	GCWGC	6 cut(s)	50, 191, 212, 899, 1387, 1995
ApoI	RAATTY	4 cut(s)	10, 82, 229, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AspA2I	CCTAGG	1 cut(s)	1199
AspS9I	GGNCC	5 cut(s)	776, 784, 1100, 2377, 2632
AsuHPI	GGTGA	6 cut(s)	60, 281, 443, 1055, 1909, 2449
AvaII	GGWCC	3 cut(s)	776, 784, 2632
AvrII	CCTAGG	1 cut(s)	1199
BaeGI	GKGCMC	2 cut(s)	558, 1144
BanI	GGYRCC	1 cut(s)	1961
BanII	GRGCYC	1 cut(s)	1936
BarI	GAAGNNNNNNTAC	2 cut(s)	1389, 1421
BbsI	GAAGAC	1 cut(s)	2071
Bbv12I	GWGCWC	4 cut(s)	523, 558, 1144, 1936
BbvCI	CCTCAGC	1 cut(s)	1874
BbvI	GCAGC	6 cut(s)	37, 199, 203, 911, 1374, 2007
BccI	CCATC	4 cut(s)	1090, 1430, 2463, 2598
BceAI	ACGGC	1 cut(s)	2364
BcgI	CGANNNNNNTGC	4 cut(s)	283, 317, 2300, 2334
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	4 cut(s)	295, 1274, 2505, 2574
BfaI	CTAG	7 cut(s)	638, 896, 1200, 1299, 1331, 2466, 2673
BfmI	CTRYAG	2 cut(s)	1215, 1449
BfrI	CTTAAG	1 cut(s)	1391
BfuAI	ACCTGC	2 cut(s)	1334, 1878
BglII	AGATCT	2 cut(s)	1593, 2181
BisI	GCNGC	6 cut(s)	51, 192, 213, 900, 1388, 1996
BlnI	CCTAGG	1 cut(s)	1199
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	6 cut(s)	52, 193, 214, 901, 1389, 1997
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	3 cut(s)	776, 784, 2632
BmgT120I	GGNCC	5 cut(s)	776, 784, 1100, 2377, 2632
BmiI	GGNNCC	3 cut(s)	786, 1101, 1963
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	66
BoxI	GACNNNNGTC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	2071
Bpu10I	CCTNAGC	2 cut(s)	526, 1874
Bpu1102I	GCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	1782, 2114
BsaBI	GATNNNNATC	2 cut(s)	1033, 2306
BsaJI	CCNNGG	4 cut(s)	1177, 1199, 1233, 2254
BsaWI	WCCGGW	3 cut(s)	233, 511, 1408
Bsc4I	CCNNNNNNNGG	4 cut(s)	1535, 2005, 2328, 2386
Bse1I	ACTGG	3 cut(s)	72, 854, 2651
Bse3DI	GCAATG	6 cut(s)	495, 711, 801, 925, 1824, 2336
Bse8I	GATNNNNATC	2 cut(s)	1033, 2306
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	4 cut(s)	1177, 1199, 1233, 2254
BseGI	GGATG	7 cut(s)	340, 771, 990, 1195, 1522, 2537, 2590
BseJI	GATNNNNATC	2 cut(s)	1033, 2306
BseLI	CCNNNNNNNGG	4 cut(s)	1535, 2005, 2328, 2386
BseMI	GCAATG	6 cut(s)	495, 711, 801, 925, 1824, 2336
BseMII	CTCAG	5 cut(s)	384, 714, 1515, 1865, 1875
BseNI	ACTGG	3 cut(s)	72, 854, 2651
BseRI	GAGGAG	1 cut(s)	2569
BseSI	GKGCMC	2 cut(s)	558, 1144
BseXI	GCAGC	6 cut(s)	37, 199, 203, 911, 1374, 2007
BseYI	CCCAGC	2 cut(s)	1502, 2341
BsgI	GTGCAG	1 cut(s)	2014
BshFI	GGCC	3 cut(s)	1102, 2160, 2379
BshNI	GGYRCC	1 cut(s)	1961
BsiHKAI	GWGCWC	4 cut(s)	523, 558, 1144, 1936
BsiSI	CCGG	4 cut(s)	234, 512, 886, 1409
BslFI	GGGAC	2 cut(s)	2347, 2572
BslI	CCNNNNNNNGG	4 cut(s)	1535, 2005, 2328, 2386
BsmAI	GTCTC	4 cut(s)	295, 1274, 2505, 2574
BsmFI	GGGAC	2 cut(s)	2347, 2572
BsmI	GAATGC	4 cut(s)	706, 1018, 1125, 1586
BsnI	GGCC	3 cut(s)	1102, 2160, 2379
Bsp1286I	GDGCHC	4 cut(s)	523, 558, 1144, 1936
Bsp13I	TCCGGA	1 cut(s)	233
Bsp1720I	GCTNAGC	1 cut(s)	477
Bsp19I	CCATGG	2 cut(s)	1177, 1233
BspACI	CCGC	3 cut(s)	1959, 2201, 2576
BspANI	GGCC	3 cut(s)	1102, 2160, 2379
BspCNI	CTCAG	5 cut(s)	383, 715, 1516, 1866, 1874
BspEI	TCCGGA	1 cut(s)	233
BspHI	TCATGA	3 cut(s)	451, 1290, 1912
BspLI	GGNNCC	3 cut(s)	786, 1101, 1963
BspMAI	CTGCAG	1 cut(s)	1453
BspMI	ACCTGC	2 cut(s)	1334, 1878
BspPI	GGATC	5 cut(s)	1168, 1419, 1669, 2016, 2256
BspT107I	GGYRCC	1 cut(s)	1961
BspTI	CTTAAG	1 cut(s)	1391
BsrDI	GCAATG	6 cut(s)	495, 711, 801, 925, 1824, 2336
BsrI	ACTGG	3 cut(s)	72, 854, 2651
BssECI	CCNNGG	4 cut(s)	1177, 1199, 1233, 2254
BssNAI	GTATAC	1 cut(s)	2022
BssT1I	CCWWGG	4 cut(s)	1177, 1199, 1233, 2254
Bst1107I	GTATAC	1 cut(s)	2022
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	7 cut(s)	505, 661, 1694, 2224, 2232, 2567, 2615
Bst6I	CTCTTC	2 cut(s)	138, 542
BstAFI	CTTAAG	1 cut(s)	1391
BstAPI	GCANNNNNTGC	3 cut(s)	710, 803, 1022
BstC8I	GCNNGC	6 cut(s)	523, 1134, 2000, 2146, 2158, 2526
BstDEI	CTNAG	8 cut(s)	5, 370, 477, 526, 723, 1524, 1861, 1874
BstDSI	CCRYGG	2 cut(s)	1177, 1233
BstENI	CCTNNNNNAGG	1 cut(s)	2003
BstF5I	GGATG	7 cut(s)	340, 771, 990, 1195, 1522, 2537, 2590
BstMAI	GTCTC	4 cut(s)	295, 1274, 2505, 2574
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 710, 803, 1022, 2462
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	5 cut(s)	65, 464, 1163, 1579, 1629
BstPAI	GACNNNNGTC	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	2 cut(s)	1215, 1449
BstSLI	GKGCMC	2 cut(s)	558, 1144
BstV1I	GCAGC	6 cut(s)	37, 199, 203, 911, 1374, 2007
BstV2I	GAAGAC	1 cut(s)	2071
BstX2I	RGATCY	5 cut(s)	1173, 1593, 2008, 2181, 2248
BstYI	RGATCY	5 cut(s)	1173, 1593, 2008, 2181, 2248
BstZ17I	GTATAC	1 cut(s)	2022
BsuRI	GGCC	3 cut(s)	1102, 2160, 2379
BtgI	CCRYGG	2 cut(s)	1177, 1233
BtsCI	GGATG	7 cut(s)	340, 771, 990, 1195, 1522, 2537, 2590
BtsI	GCAGTG	2 cut(s)	299, 1886
BtsIMutI	CAGTG	4 cut(s)	299, 918, 1886, 1997
BveI	ACCTGC	2 cut(s)	1334, 1878
Cac8I	GCNNGC	6 cut(s)	523, 1134, 2000, 2146, 2158, 2526
CaiI	CAGNNNCTG	2 cut(s)	377, 1109
CciI	TCATGA	3 cut(s)	451, 1290, 1912
Cfr13I	GGNCC	5 cut(s)	776, 784, 1100, 2377, 2632
CsiI	ACCWGGT	1 cut(s)	180
Csp6I	GTAC	6 cut(s)	42, 424, 1183, 1579, 2559, 2616
CviQI	GTAC	6 cut(s)	42, 424, 1183, 1579, 2559, 2616
DdeI	CTNAG	8 cut(s)	5, 370, 477, 526, 723, 1524, 1861, 1874
DraI	TTTAAA	4 cut(s)	36, 88, 169, 1149
DrdI	GACNNNNNNGTC	1 cut(s)	686
DseDI	GACNNNNNNGTC	1 cut(s)	686
Eam1104I	CTCTTC	2 cut(s)	138, 542
EarI	CTCTTC	2 cut(s)	138, 542
Ecl136II	GAGCTC	1 cut(s)	1934
Eco130I	CCWWGG	4 cut(s)	1177, 1199, 1233, 2254
Eco24I	GRGCYC	1 cut(s)	1936
Eco32I	GATATC	2 cut(s)	615, 1314
Eco47I	GGWCC	3 cut(s)	776, 784, 2632
Eco53kI	GAGCTC	1 cut(s)	1934
Eco57I	CTGAAG	2 cut(s)	1785, 2198
EcoICRI	GAGCTC	1 cut(s)	1934
EcoNI	CCTNNNNNAGG	1 cut(s)	2003
EcoRII	CCWGG	1 cut(s)	180
EcoRV	GATATC	2 cut(s)	615, 1314
EcoT14I	CCWWGG	4 cut(s)	1177, 1199, 1233, 2254
EcoT22I	ATGCAT	6 cut(s)	462, 655, 1558, 2052, 2284, 2458
EcoT38I	GRGCYC	1 cut(s)	1936
ErhI	CCWWGG	4 cut(s)	1177, 1199, 1233, 2254
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	2 cut(s)	2347, 2572
FauI	CCCGC	1 cut(s)	2569
FauNDI	CATATG	4 cut(s)	748, 2088, 2327, 2364
FblI	GTMKAC	3 cut(s)	58, 1214, 2021
Fnu4HI	GCNGC	6 cut(s)	51, 192, 213, 900, 1388, 1996
FokI	GGATG	7 cut(s)	347, 778, 997, 1182, 1529, 2544, 2577
FriOI	GRGCYC	1 cut(s)	1936
Fsp4HI	GCNGC	6 cut(s)	51, 192, 213, 900, 1388, 1996
FspBI	CTAG	7 cut(s)	638, 896, 1200, 1299, 1331, 2466, 2673
GluI	GCNGC	6 cut(s)	51, 192, 213, 900, 1388, 1996
GsaI	CCCAGC	2 cut(s)	1506, 2345
HaeIII	GGCC	3 cut(s)	1102, 2160, 2379
HapII	CCGG	4 cut(s)	234, 512, 886, 1409
HinfI	GANTC	6 cut(s)	374, 865, 968, 1106, 1211, 1723
HpaII	CCGG	4 cut(s)	234, 512, 886, 1409
HphI	GGTGA	6 cut(s)	60, 281, 443, 1055, 1909, 2449
Hpy188I	TCNGA	8 cut(s)	373, 420, 612, 646, 724, 1602, 1702, 2461
HpyAV	CCTTC	5 cut(s)	206, 466, 1391, 1847, 2165
HpyCH4III	ACNGT	7 cut(s)	505, 661, 1694, 2224, 2232, 2567, 2615
HpyCH4IV	ACGT	1 cut(s)	1917
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 710, 803, 1022, 2462
HpyF3I	CTNAG	8 cut(s)	5, 370, 477, 526, 723, 1524, 1861, 1874
HpySE526I	ACGT	1 cut(s)	1917
Kpn2I	TCCGGA	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	93, 1931
Lsp1109I	GCAGC	6 cut(s)	37, 199, 203, 911, 1374, 2007
MabI	ACCWGGT	1 cut(s)	180
MaeI	CTAG	7 cut(s)	638, 896, 1200, 1299, 1331, 2466, 2673
MaeII	ACGT	1 cut(s)	1917
MaeIII	GTNAC	6 cut(s)	66, 365, 490, 1111, 1571, 1788
MboII	GAAGA	7 cut(s)	125, 500, 559, 1181, 1901, 2071, 2191
MflI	RGATCY	5 cut(s)	1173, 1593, 2008, 2181, 2248
MhlI	GDGCHC	4 cut(s)	523, 558, 1144, 1936
MlyI	GAGTC	2 cut(s)	1100, 1220
MmeI	TCCRAC	4 cut(s)	743, 1204, 1494, 2519
Mph1103I	ATGCAT	6 cut(s)	462, 655, 1558, 2052, 2284, 2458
MroI	TCCGGA	1 cut(s)	233
MslI	CAYNNNNRTG	7 cut(s)	252, 465, 561, 563, 873, 1671, 1890
MspA1I	CMGCKG	1 cut(s)	2528
MspCI	CTTAAG	1 cut(s)	1391
MspI	CCGG	4 cut(s)	234, 512, 886, 1409
MspR9I	CCNGG	1 cut(s)	182
MssI	GTTTAAAC	1 cut(s)	169
Mva1269I	GAATGC	4 cut(s)	706, 1018, 1125, 1586
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	5 cut(s)	221, 710, 803, 1022, 2462
NcoI	CCATGG	2 cut(s)	1177, 1233
NdeI	CATATG	4 cut(s)	748, 2088, 2327, 2364
NlaIV	GGNNCC	3 cut(s)	786, 1101, 1963
NmuCI	GTSAC	1 cut(s)	66
NsiI	ATGCAT	6 cut(s)	462, 655, 1558, 2052, 2284, 2458
NspI	RCATGY	5 cut(s)	65, 464, 1163, 1579, 1629
OliI	CACNNNNGTG	1 cut(s)	563
PagI	TCATGA	3 cut(s)	451, 1290, 1912
PaqCI	CACCTGC	1 cut(s)	1878
PciI	ACATGT	2 cut(s)	61, 1575
PctI	GAATGC	4 cut(s)	706, 1018, 1125, 1586
PfeI	GAWTC	4 cut(s)	374, 865, 968, 1723
PflMI	CCANNNNNTGG	1 cut(s)	2328
PkrI	GCNGC	6 cut(s)	52, 193, 214, 901, 1389, 1997
PleI	GAGTC	2 cut(s)	1100, 1219
PmeI	GTTTAAAC	1 cut(s)	169
PpsI	GAGTC	2 cut(s)	1100, 1219
PscI	ACATGT	2 cut(s)	61, 1575
PshAI	GACNNNNGTC	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	1980
Psp124BI	GAGCTC	1 cut(s)	1936
Psp6I	CCWGG	1 cut(s)	180
PspFI	CCCAGC	2 cut(s)	1502, 2341
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	786, 1101, 1963
PspPI	GGNCC	5 cut(s)	776, 784, 1100, 2377, 2632
PsrI	GAACNNNNNNTAC	2 cut(s)	2608, 2640
PstI	CTGCAG	1 cut(s)	1453
PstNI	CAGNNNCTG	2 cut(s)	377, 1109
PsuI	RGATCY	5 cut(s)	1173, 1593, 2008, 2181, 2248
PvuII	CAGCTG	1 cut(s)	2528
RsaI	GTAC	6 cut(s)	43, 425, 1184, 1580, 2560, 2617
RsaNI	GTAC	6 cut(s)	42, 424, 1183, 1579, 2559, 2616
RseI	CAYNNNNRTG	7 cut(s)	252, 465, 561, 563, 873, 1671, 1890
SacI	GAGCTC	1 cut(s)	1936
SatI	GCNGC	6 cut(s)	51, 192, 213, 900, 1388, 1996
Sau96I	GGNCC	5 cut(s)	776, 784, 1100, 2377, 2632
SchI	GAGTC	2 cut(s)	1100, 1220
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	4 cut(s)	523, 558, 1144, 1936
SexAI	ACCWGGT	1 cut(s)	180
SfcI	CTRYAG	2 cut(s)	1215, 1449
SinI	GGWCC	3 cut(s)	776, 784, 2632
SmiMI	CAYNNNNRTG	7 cut(s)	252, 465, 561, 563, 873, 1671, 1890
SmlI	CTYRAG	3 cut(s)	1391, 1797, 2093
SmoI	CTYRAG	3 cut(s)	1391, 1797, 2093
SsiI	CCGC	3 cut(s)	1959, 2201, 2576
SspI	AATATT	2 cut(s)	1534, 2422
SspMI	CTAG	7 cut(s)	638, 896, 1200, 1299, 1331, 2466, 2673
SstI	GAGCTC	1 cut(s)	1936
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	4 cut(s)	1177, 1199, 1233, 2254
TaaI	ACNGT	7 cut(s)	505, 661, 1694, 2224, 2232, 2567, 2615
TaiI	ACGT	1 cut(s)	1920
TaqI	TCGA	7 cut(s)	79, 293, 666, 1192, 1735, 2310, 2415
TatI	WGTACW	4 cut(s)	423, 1578, 2558, 2615
TfiI	GAWTC	4 cut(s)	374, 865, 968, 1723
TscAI	CASTG	4 cut(s)	306, 918, 1886, 1997
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	6 cut(s)	50, 191, 212, 899, 1387, 1995
Tsp45I	GTSAC	1 cut(s)	66
TspRI	CASTG	4 cut(s)	306, 918, 1886, 1997
Van91I	CCANNNNNTGG	1 cut(s)	2328
Vha464I	CTTAAG	1 cut(s)	1391
VneI	GTGCAC	2 cut(s)	554, 1140
VpaK11BI	GGWCC	3 cut(s)	776, 784, 2632
XagI	CCTNNNNNAGG	1 cut(s)	2003
XapI	RAATTY	4 cut(s)	10, 82, 229, 604
XceI	RCATGY	5 cut(s)	65, 464, 1163, 1579, 1629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2053
XmaJI	CCTAGG	1 cut(s)	1199
XmiI	GTMKAC	3 cut(s)	58, 1214, 2021
XspI	CTAG	7 cut(s)	638, 896, 1200, 1299, 1331, 2466, 2673
Zsp2I	ATGCAT	6 cut(s)	462, 655, 1558, 2052, 2284, 2458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.