Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016247

Physical Location & Seq

Genomic Coordinates Forward (+)

179412 .. 180776

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00083.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCAGACAAGTTTTGCAAAAAATACTTCGAGCATGAGGAGAGAGTCACTTTGGCTCAACTCAACAGCACTCGCCAAAGATCAAGCGAAAATCTAGTTGAATTCGTGAGGCGCTACAGAGACCTTGCTTTGGATTGCTATGATGAGAAAGGAGAAGAAGCCTTGGTGGAGATCTGCGTCGGTAACATGCTACCTAAATACAGGGTGTACCTTGAGAATGCAAACATAGGTACCTTTACACGCTTGATGGACGTTGTAAAGAAGACAAGCATGTCTATCAAGGTTGTTAATGAAAATAGAACATGGAGGTCAGAGAAGGATACACATCAAGCATTGACAATTGGTGAAAGGCACTCAAACTCAAATAAGCTCAAGGATAAAGAAACTTATCCTGCTTTGCCATGCTATGACGAAGAACTTAATGCCATCCTAGATACCATGTTTGTTGATGGTGTAATCAAGCCACCATGCCCATACAAAAACCCATCTAAAGAAGACAAAGCACACCCACGCTACTGTAGGTACCACCGGCTTGTCAGAAAAGAAACAGCCGCTGTCATAACTTGCTTTGAAGATGATATGGAGGAAGGAAGCCGCCCTAGTGGCCAGGTGCCCTACTTGGTTACGGAGCCGAAAGAAGGATGCTTTGACATAGTTTCTTGGAATAAGAGTTGTATGCCACAGAGTTACAATACCCCAGGCTCTTATCCCATAGAGTGGAAGGAAGATGAGCATGCTCACTATCACATGGGGGATTCAAGCAACAAAGAAGCGACTGGAGTGACATTCACAGATTTGGAGGAGAATGTGGCAAGGTCTCACCTCAACGAAAGCAAAAAGCAGCGATCTTATCCAACATGTGCACGAGTCCTTCAACAGAGCCCAAAGTTCAAATCTCTTTTTGATCAGCTTGAGTACGGACAACAGGCTAGGCAAGCAGCAGTAGAAGCACTCATGCAGGTCTCAGCTGATTTTGGGCCTCAAAGATCTTCAGTTGAGTCAGCCAACAATAGGGCATTCATGGAGGACCCTAATAGTGAAGCTTATCAAAGCGGATGCTACATGCTTGTCTCACAAGATGTTGTGACAATGGGTCTCATCAACAGCAAATGGCTCAAGCTTTATCATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 Retrotrans_gag

Protein Analysis

378

Amino Acids

43.38

Weight (kDa)

5.89

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25685 FvH4_1g29804 FvH4_2g00082 FvH4_2g00083 FvH4_3g31631 FvH4_3g31632 FvH4_4g02081 FvH4_4g14568 FvH4_4g17921 FvH4_6g24054 FvH4_6g31271
rosa_multiflora	Rmu_sc0000744.1_g000132 Rmu_sc0002617.1_g000014
rosa_roxburghii	Rroxscaffold_2G00120830
rosa_samantha	Rh6BG488000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	271
Acc36I	ACCTGC	1 cut(s)	949
Acc65I	GGTACC	2 cut(s)	230, 522
AccB1I	GGYRCC	3 cut(s)	230, 522, 610
AccB7I	CCANNNNNTGG	1 cut(s)	717
AciI	CCGC	3 cut(s)	552, 595, 1053
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	975
AfaI	GTAC	4 cut(s)	209, 232, 524, 917
AfiI	CCNNNNNNNGG	4 cut(s)	130, 638, 717, 1011
AflIII	ACRYGT	1 cut(s)	857
AgsI	TTSAA	5 cut(s)	101, 572, 759, 875, 892
AhdI	GACNNNNNGTC	1 cut(s)	1092
AjnI	CCWGG	2 cut(s)	606, 697
AluBI	AGCT	5 cut(s)	370, 910, 968, 1043, 1120
AluI	AGCT	5 cut(s)	370, 910, 968, 1043, 1120
Alw21I	GWGCWC	1 cut(s)	865
Alw26I	GTCTC	5 cut(s)	114, 822, 967, 1075, 1100
Alw44I	GTGCAC	1 cut(s)	861
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	2 cut(s)	604, 977
ApaLI	GTGCAC	1 cut(s)	861
ApeKI	GCWGC	2 cut(s)	841, 938
ApoI	RAATTY	1 cut(s)	101
Asp718I	GGTACC	2 cut(s)	230, 522
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	977, 1027
AsuHPI	GGTGA	2 cut(s)	356, 812
AvaII	GGWCC	1 cut(s)	1027
BaeGI	GKGCMC	2 cut(s)	615, 865
BaeI	ACNNNNGTAYC	2 cut(s)	214, 247
BalI	TGGCCA	1 cut(s)	606
BanI	GGYRCC	3 cut(s)	230, 522, 610
BanII	GRGCYC	1 cut(s)	884
BauI	CACGAG	1 cut(s)	864
BbsI	GAAGAC	2 cut(s)	269, 501
Bbv12I	GWGCWC	1 cut(s)	865
BbvI	GCAGC	2 cut(s)	853, 950
BccI	CCATC	4 cut(s)	241, 434, 443, 493
BciT130I	CCWGG	2 cut(s)	608, 699
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	904
BcoDI	GTCTC	5 cut(s)	114, 822, 967, 1075, 1100
BfaI	CTAG	4 cut(s)	95, 431, 600, 930
BfmI	CTRYAG	2 cut(s)	115, 517
BfoI	RGCGCY	1 cut(s)	115
BfuAI	ACCTGC	1 cut(s)	949
BfuI	GTATCC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	603
BglII	AGATCT	2 cut(s)	171, 986
BisI	GCNGC	4 cut(s)	552, 595, 842, 939
BlsI	GCNGC	4 cut(s)	553, 596, 843, 940
Bme1390I	CCNGG	2 cut(s)	608, 699
Bme18I	GGWCC	1 cut(s)	1027
BmeRI	GACNNNNNGTC	1 cut(s)	1092
BmgT120I	GGNCC	2 cut(s)	977, 1027
BmiI	GGNNCC	5 cut(s)	232, 524, 612, 630, 1029
BmrFI	CCNGG	2 cut(s)	608, 699
BmsI	GCATC	2 cut(s)	632, 1046
BpiI	GAAGAC	2 cut(s)	269, 501
BpmI	CTGGAG	1 cut(s)	798
BpuEI	CTTGAG	4 cut(s)	233, 356, 932, 1100
BsaBI	GATNNNNATC	1 cut(s)	324
BsaI	GGTCTC	4 cut(s)	114, 822, 967, 1100
BsaJI	CCNNGG	2 cut(s)	162, 697
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 638, 717, 1011
Bse118I	RCCGGY	1 cut(s)	528
Bse1I	ACTGG	1 cut(s)	781
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	608, 699
BseDI	CCNNGG	2 cut(s)	162, 697
BseGI	GGATG	3 cut(s)	426, 647, 1061
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	4 cut(s)	130, 638, 717, 1011
BseMII	CTCAG	1 cut(s)	978
BseNI	ACTGG	1 cut(s)	781
BseRI	GAGGAG	2 cut(s)	53, 815
BseSI	GKGCMC	2 cut(s)	615, 865
BseXI	GCAGC	2 cut(s)	853, 950
BshFI	GGCC	2 cut(s)	606, 979
BshNI	GGYRCC	3 cut(s)	230, 522, 610
BsiHKAI	GWGCWC	1 cut(s)	865
BsiSI	CCGG	1 cut(s)	529
BslI	CCNNNNNNNGG	4 cut(s)	130, 638, 717, 1011
BsmAI	GTCTC	5 cut(s)	114, 822, 967, 1075, 1100
BsmI	GAATGC	2 cut(s)	223, 1016
BsnI	GGCC	2 cut(s)	606, 979
Bso31I	GGTCTC	4 cut(s)	114, 822, 967, 1100
Bsp1286I	GDGCHC	3 cut(s)	615, 865, 884
Bsp143I	GATC	5 cut(s)	80, 171, 845, 904, 986
BspACI	CCGC	3 cut(s)	552, 595, 1053
BspANI	GGCC	2 cut(s)	606, 979
BspCNI	CTCAG	1 cut(s)	977
BspLI	GGNNCC	5 cut(s)	232, 524, 612, 630, 1029
BspMI	ACCTGC	1 cut(s)	949
BspT107I	GGYRCC	3 cut(s)	230, 522, 610
BspTNI	GGTCTC	4 cut(s)	114, 822, 967, 1100
BsrFI	RCCGGY	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	781
BssAI	RCCGGY	1 cut(s)	528
BssECI	CCNNGG	2 cut(s)	162, 697
BssMI	GATC	5 cut(s)	80, 171, 845, 904, 986
BssSI	CACGAG	1 cut(s)	864
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	864
Bst2UI	CCWGG	2 cut(s)	608, 699
Bst4CI	ACNGT	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	735, 936
BstDEI	CTNAG	2 cut(s)	964, 1131
BstF5I	GGATG	3 cut(s)	426, 647, 1061
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	5 cut(s)	83, 174, 848, 907, 989
BstMAI	GTCTC	5 cut(s)	114, 822, 967, 1075, 1100
BstMBI	GATC	5 cut(s)	80, 171, 845, 904, 986
BstMWI	GCNNNNNNNGC	3 cut(s)	603, 935, 947
BstNI	CCWGG	2 cut(s)	608, 699
BstNSI	RCATGY	5 cut(s)	190, 274, 737, 861, 1066
BstSCI	CCNGG	2 cut(s)	606, 697
BstSFI	CTRYAG	2 cut(s)	115, 517
BstSLI	GKGCMC	2 cut(s)	615, 865
BstV1I	GCAGC	2 cut(s)	853, 950
BstV2I	GAAGAC	2 cut(s)	269, 501
BstX2I	RGATCY	2 cut(s)	171, 986
BstYI	RGATCY	2 cut(s)	171, 986
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	606, 979
BtsCI	GGATG	3 cut(s)	426, 647, 1061
BveI	ACCTGC	1 cut(s)	949
Cac8I	GCNNGC	2 cut(s)	735, 936
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	528
Cfr13I	GGNCC	2 cut(s)	977, 1027
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	4 cut(s)	208, 231, 523, 916
CviQI	GTAC	4 cut(s)	208, 231, 523, 916
DdeI	CTNAG	2 cut(s)	964, 1131
DpnI	GATC	5 cut(s)	82, 173, 847, 906, 988
DpnII	GATC	5 cut(s)	80, 171, 845, 904, 986
DrdI	GACNNNNNNGTC	1 cut(s)	271
DriI	GACNNNNNGTC	1 cut(s)	1092
DseDI	GACNNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	604
Eam1105I	GACNNNNNGTC	1 cut(s)	1092
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	884
Eco31I	GGTCTC	4 cut(s)	114, 822, 967, 1100
Eco47I	GGWCC	1 cut(s)	1027
Eco57I	CTGAAG	1 cut(s)	975
EcoO109I	RGGNCCY	1 cut(s)	1027
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	606, 697
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	162
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	4 cut(s)	552, 595, 842, 939
FokI	GGATG	3 cut(s)	413, 654, 1068
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	4 cut(s)	552, 595, 842, 939
FspBI	CTAG	4 cut(s)	95, 431, 600, 930
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	4 cut(s)	552, 595, 842, 939
GsuI	CTGGAG	1 cut(s)	798
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	606, 979
HapII	CCGG	1 cut(s)	529
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HindIII	AAGCTT	2 cut(s)	1041, 1118
HinfI	GANTC	4 cut(s)	45, 755, 867, 998
HpaII	CCGG	1 cut(s)	529
HphI	GGTGA	2 cut(s)	356, 812
Hpy166II	GTNNAC	2 cut(s)	208, 863
Hpy188I	TCNGA	2 cut(s)	313, 539
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	208, 863
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	5 cut(s)	310, 581, 632, 715, 881
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	18, 221, 863, 958
HpyF10VI	GCNNNNNNNGC	3 cut(s)	603, 935, 947
HpyF3I	CTNAG	2 cut(s)	964, 1131
HpySE526I	ACGT	1 cut(s)	252
HspAI	GCGC	1 cut(s)	112
KpnI	GGTACC	2 cut(s)	234, 526
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	5 cut(s)	80, 171, 845, 904, 986
LmnI	GCTCC	1 cut(s)	628
Lsp1109I	GCAGC	2 cut(s)	853, 950
LweI	GCATC	2 cut(s)	632, 1046
MaeI	CTAG	4 cut(s)	95, 431, 600, 930
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	6 cut(s)	46, 182, 622, 686, 781, 1084
MalI	GATC	5 cut(s)	82, 173, 847, 906, 988
MboI	GATC	5 cut(s)	80, 171, 845, 904, 986
MboII	GAAGA	7 cut(s)	167, 274, 425, 506, 584, 737, 981
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	2 cut(s)	171, 986
MhlI	GDGCHC	3 cut(s)	615, 865, 884
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	2 cut(s)	101, 339
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	3 cut(s)	54, 876, 1007
MmeI	TCCRAC	1 cut(s)	878
MnlI	CCTC	8 cut(s)	31, 102, 300, 577, 793, 833, 990, 1018
Mox20I	TGGCCA	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	2 cut(s)	288, 420
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	2 cut(s)	554, 968
MspI	CCGG	1 cut(s)	529
MspR9I	CCNGG	2 cut(s)	608, 699
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	223, 1016
MvaI	CCWGG	2 cut(s)	608, 699
MwoI	GCNNNNNNNGC	3 cut(s)	603, 935, 947
NdeII	GATC	5 cut(s)	80, 171, 845, 904, 986
NlaIV	GGNNCC	5 cut(s)	232, 524, 612, 630, 1029
NmuCI	GTSAC	3 cut(s)	46, 781, 1084
NspI	RCATGY	5 cut(s)	190, 274, 737, 861, 1066
PaeI	GCATGC	1 cut(s)	737
PciI	ACATGT	1 cut(s)	857
PctI	GAATGC	2 cut(s)	223, 1016
PfeI	GAWTC	1 cut(s)	755
PflMI	CCANNNNNTGG	1 cut(s)	717
PkrI	GCNGC	4 cut(s)	553, 596, 843, 940
PleI	GAGTC	3 cut(s)	53, 875, 1006
PpsI	GAGTC	3 cut(s)	53, 875, 1006
PpuMI	RGGWCCY	1 cut(s)	1027
PscI	ACATGT	1 cut(s)	857
Psp5II	RGGWCCY	1 cut(s)	1027
Psp6I	CCWGG	2 cut(s)	606, 697
PspGI	CCWGG	2 cut(s)	606, 697
PspN4I	GGNNCC	5 cut(s)	232, 524, 612, 630, 1029
PspPI	GGNCC	2 cut(s)	977, 1027
PspPPI	RGGWCCY	1 cut(s)	1027
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	2 cut(s)	171, 986
PvuII	CAGCTG	1 cut(s)	968
RsaI	GTAC	4 cut(s)	209, 232, 524, 917
RsaNI	GTAC	4 cut(s)	208, 231, 523, 916
SaqAI	TTAA	2 cut(s)	288, 420
SatI	GCNGC	4 cut(s)	552, 595, 842, 939
Sau3AI	GATC	5 cut(s)	80, 171, 845, 904, 986
Sau96I	GGNCC	2 cut(s)	977, 1027
SchI	GAGTC	3 cut(s)	54, 876, 1007
ScrFI	CCNGG	2 cut(s)	608, 699
SduI	GDGCHC	3 cut(s)	615, 865, 884
SfaNI	GCATC	2 cut(s)	632, 1046
SfcI	CTRYAG	2 cut(s)	115, 517
SinI	GGWCC	1 cut(s)	1027
SmlI	CTYRAG	4 cut(s)	212, 371, 911, 1115
SmoI	CTYRAG	4 cut(s)	212, 371, 911, 1115
SphI	GCATGC	1 cut(s)	737
Sse9I	AATT	2 cut(s)	101, 339
SsiI	CCGC	3 cut(s)	552, 595, 1053
SspMI	CTAG	4 cut(s)	95, 431, 600, 930
StyD4I	CCNGG	2 cut(s)	606, 697
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	30
TasI	AATT	2 cut(s)	101, 339
TauI	GCSGC	2 cut(s)	554, 597
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	2 cut(s)	288, 420
Tru9I	TTAA	2 cut(s)	288, 420
TseFI	GTSAC	3 cut(s)	46, 781, 1084
TseI	GCWGC	2 cut(s)	841, 938
Tsp45I	GTSAC	3 cut(s)	46, 781, 1084
TspDTI	ATGAA	2 cut(s)	306, 1009
TspGWI	ACGGA	2 cut(s)	641, 933
Van91I	CCANNNNNTGG	1 cut(s)	717
VneI	GTGCAC	1 cut(s)	861
VpaK11BI	GGWCC	1 cut(s)	1027
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	5 cut(s)	190, 274, 737, 861, 1066
XspI	CTAG	4 cut(s)	95, 431, 600, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.