Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002617.1

Orthogroup ID

OG0016247

Physical Location & Seq

Genomic Coordinates Reverse (-)

61304 .. 61741

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002617.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgcactcggacctcatgcagggcaccataaccttaggcttcgtgagttctcaaaaacactcactgaccgtgcttatacatggtacaccacacttgctgcaggctctattcgaacttgtgaagaactggcaagcaaattctgcaagaagtactttcaagcatgaagaaagagtcaccattacacaactcaactacactcaccaaaggacaagcgaaaaccttgttgactttgttcgcaggtttcgggacctggctcttgattgctatgatgagaaaggagagcaatctctggtagaaatttgtgtcagcaacatgctgccacaatatagagtctatctggagaatgttggtattggccaattttctggactaatggatgcagcaaagaagacaagcatgttcgtaaaggcacaaaaaaaaaaaaagctggcggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 Retrotrans_gag

Protein Analysis

145

Amino Acids

16.57

Weight (kDa)

9.14

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25685 FvH4_1g29804 FvH4_2g00082 FvH4_2g00083 FvH4_3g31631 FvH4_3g31632 FvH4_4g02081 FvH4_4g14568 FvH4_4g17921 FvH4_6g24054 FvH4_6g31271
rosa_multiflora	Rmu_sc0000744.1_g000132 Rmu_sc0002617.1_g000014
rosa_roxburghii	Rroxscaffold_2G00120830
rosa_samantha	Rh6BG488000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	1 cut(s)	431
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	2 cut(s)	136, 297
AfaI	GTAC	2 cut(s)	85, 151
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	1 cut(s)	427
AluI	AGCT	1 cut(s)	427
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	3 cut(s)	97, 316, 380
ApoI	RAATTY	2 cut(s)	136, 297
AspS9I	GGNCC	2 cut(s)	10, 247
AsuHPI	GGTGA	2 cut(s)	166, 191
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	10, 247
AxyI	CCTNAGG	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	84, 303, 392
BciT130I	CCWGG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	3 cut(s)	98, 317, 381
BlsI	GCNGC	3 cut(s)	99, 318, 382
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	2 cut(s)	10, 247
BmgT120I	GGNCC	2 cut(s)	10, 247
BmiI	GGNNCC	2 cut(s)	25, 248
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	131
Bse21I	CCTNAGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	251
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	84, 303, 392
BshFI	GGCC	1 cut(s)	357
BshNI	GGYRCC	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	357
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	25, 248
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	102, 132, 429
BstDEI	CTNAG	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	2 cut(s)	316, 400
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	98
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	84, 303, 392
BstV2I	GAAGAC	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	365
Bsu36I	CCTNAGG	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	62
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	102, 132, 429
Cfr13I	GGNCC	2 cut(s)	10, 247
Csp6I	GTAC	2 cut(s)	84, 150
CviAII	CATG	5 cut(s)	16, 80, 161, 313, 397
CviJI	RGCY	5 cut(s)	39, 104, 254, 357, 427
CviKI_1	RGCY	5 cut(s)	39, 104, 254, 357, 427
CviQI	GTAC	2 cut(s)	84, 150
DdeI	CTNAG	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	10, 247
Eco81I	CCTNAGG	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	19, 83, 164, 316, 400
FaiI	YATR	9 cut(s)	17, 29, 77, 81, 162, 267, 314, 327, 398
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	5 cut(s)	15, 79, 160, 312, 396
Fnu4HI	GCNGC	3 cut(s)	98, 317, 381
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	3 cut(s)	98, 317, 381
GluI	GCNGC	3 cut(s)	98, 317, 381
GsuI	CTGGAG	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	5 cut(s)	19, 83, 164, 316, 400
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	171, 330
HphI	GGTGA	2 cut(s)	166, 191
Hpy166II	GTNNAC	2 cut(s)	86, 226
Hpy188I	TCNGA	2 cut(s)	10, 437
Hpy188III	TCNNGA	5 cut(s)	43, 245, 257, 338, 366
Hpy8I	GTNNAC	2 cut(s)	86, 226
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	5 cut(s)	4, 19, 100, 143, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	5 cut(s)	19, 83, 164, 316, 400
Lsp1109I	GCAGC	3 cut(s)	84, 303, 392
LweI	GCATC	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	172
MboII	GAAGA	3 cut(s)	133, 176, 400
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	3 cut(s)	136, 297, 359
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	180, 339
MnlI	CCTC	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	140
NlaIII	CATG	5 cut(s)	19, 83, 164, 316, 400
NlaIV	GGNNCC	2 cut(s)	25, 248
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	2 cut(s)	316, 400
NspV	TTCGAA	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	99, 318, 382
PleI	GAGTC	2 cut(s)	179, 338
PpsI	GAGTC	2 cut(s)	179, 338
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	25, 248
PspPI	GGNCC	2 cut(s)	10, 247
PspPPI	RGGWCCY	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	102
RsaI	GTAC	2 cut(s)	85, 151
RsaNI	GTAC	2 cut(s)	84, 150
SatI	GCNGC	3 cut(s)	98, 317, 381
Sau96I	GGNCC	2 cut(s)	10, 247
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	2 cut(s)	180, 339
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	6 cut(s)	15, 35, 222, 242, 252, 429
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	98
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	2 cut(s)	10, 247
Sse9I	AATT	3 cut(s)	136, 297, 359
SsiI	CCGC	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	111
TasI	AATT	3 cut(s)	136, 297, 359
TatI	WGTACW	1 cut(s)	149
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	97, 316, 380
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	10, 247
XagI	CCTNNNNNAGG	1 cut(s)	17
XapI	RAATTY	2 cut(s)	136, 297
XceI	RCATGY	2 cut(s)	316, 400
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.