Retrotransposon gag protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g25685 FvH4_1g29804 FvH4_2g00082 FvH4_2g00083 FvH4_3g31631 FvH4_3g31632 FvH4_4g02081 FvH4_4g14568 FvH4_4g17921 FvH4_6g24054 FvH4_6g31271 |
| rosa_multiflora | Rmu_sc0000744.1_g000132 Rmu_sc0002617.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00120830 |
| rosa_samantha | Rh6BG488000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 232 |
| AfaI | GTAC | 1 cut(s) | 325 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 130 |
| AgsI | TTSAA | 1 cut(s) | 83 |
| AluBI | AGCT | 4 cut(s) | 76, 116, 233, 353 |
| AluI | AGCT | 4 cut(s) | 76, 116, 233, 353 |
| AlwI | GGATC | 1 cut(s) | 232 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 233 |
| Ama87I | CYCGRG | 1 cut(s) | 126 |
| ApeKI | GCWGC | 1 cut(s) | 197 |
| AvaI | CYCGRG | 1 cut(s) | 126 |
| BbsI | GAAGAC | 1 cut(s) | 248 |
| BbvI | GCAGC | 1 cut(s) | 209 |
| BfaI | CTAG | 4 cut(s) | 77, 159, 191, 284 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 194 |
| BisI | GCNGC | 1 cut(s) | 198 |
| BlsI | GCNGC | 1 cut(s) | 199 |
| BmeT110I | CYCGRG | 1 cut(s) | 126 |
| BmiI | GGNNCC | 2 cut(s) | 106, 135 |
| BmsI | GCATC | 1 cut(s) | 145 |
| BpiI | GAAGAC | 1 cut(s) | 248 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 31, 63 |
| BpmI | CTGGAG | 1 cut(s) | 33 |
| BpuEI | CTTGAG | 2 cut(s) | 135, 246 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 130 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 130 |
| BseMII | CTCAG | 1 cut(s) | 126 |
| BseXI | GCAGC | 1 cut(s) | 209 |
| BsiHKCI | CYCGRG | 1 cut(s) | 126 |
| BslFI | GGGAC | 1 cut(s) | 176 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 130 |
| BsmFI | GGGAC | 1 cut(s) | 176 |
| BsoBI | CYCGRG | 1 cut(s) | 126 |
| Bsp143I | GATC | 1 cut(s) | 224 |
| BspCNI | CTCAG | 1 cut(s) | 125 |
| BspHI | TCATGA | 1 cut(s) | 175 |
| BspLI | GGNNCC | 2 cut(s) | 106, 135 |
| BspPI | GGATC | 1 cut(s) | 232 |
| BssMI | GATC | 1 cut(s) | 224 |
| BstC8I | GCNNGC | 1 cut(s) | 351 |
| BstDEI | CTNAG | 4 cut(s) | 112, 117, 345, 354 |
| BstKTI | GATC | 1 cut(s) | 227 |
| BstMBI | GATC | 1 cut(s) | 224 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 194 |
| BstV1I | GCAGC | 1 cut(s) | 209 |
| BstV2I | GAAGAC | 1 cut(s) | 248 |
| Cac8I | GCNNGC | 1 cut(s) | 351 |
| CaiI | CAGNNNCTG | 1 cut(s) | 233 |
| CciI | TCATGA | 1 cut(s) | 175 |
| Csp6I | GTAC | 1 cut(s) | 324 |
| CviAII | CATG | 3 cut(s) | 88, 176, 280 |
| CviJI | RGCY | 7 cut(s) | 76, 86, 105, 116, 188, 233, 353 |
| CviKI_1 | RGCY | 7 cut(s) | 76, 86, 105, 116, 188, 233, 353 |
| CviQI | GTAC | 1 cut(s) | 324 |
| DdeI | CTNAG | 4 cut(s) | 112, 117, 345, 354 |
| DpnI | GATC | 1 cut(s) | 226 |
| DpnII | GATC | 1 cut(s) | 224 |
| Eco88I | CYCGRG | 1 cut(s) | 126 |
| FaeI | CATG | 3 cut(s) | 91, 179, 283 |
| FaiI | YATR | 3 cut(s) | 89, 177, 281 |
| FaqI | GGGAC | 1 cut(s) | 176 |
| FatI | CATG | 3 cut(s) | 87, 175, 279 |
| Fnu4HI | GCNGC | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 1 cut(s) | 198 |
| FspBI | CTAG | 4 cut(s) | 77, 159, 191, 284 |
| GluI | GCNGC | 1 cut(s) | 198 |
| GsuI | CTGGAG | 1 cut(s) | 33 |
| Hin1II | CATG | 3 cut(s) | 91, 179, 283 |
| HindIII | AAGCTT | 1 cut(s) | 351 |
| HinfI | GANTC | 3 cut(s) | 40, 182, 209 |
| Hpy188III | TCNNGA | 5 cut(s) | 50, 152, 176, 228, 263 |
| HpyAV | CCTTC | 2 cut(s) | 13, 85 |
| HpyCH4IV | ACGT | 1 cut(s) | 30 |
| HpyCH4V | TGCA | 1 cut(s) | 300 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 194 |
| HpyF3I | CTNAG | 4 cut(s) | 112, 117, 345, 354 |
| HpySE526I | ACGT | 1 cut(s) | 30 |
| Hsp92II | CATG | 3 cut(s) | 91, 179, 283 |
| Kzo9I | GATC | 1 cut(s) | 224 |
| LmnI | GCTCC | 2 cut(s) | 110, 230 |
| LpnPI | CCDG | 3 cut(s) | 63, 150, 213 |
| Lsp1109I | GCAGC | 1 cut(s) | 209 |
| LweI | GCATC | 1 cut(s) | 145 |
| MaeI | CTAG | 4 cut(s) | 77, 159, 191, 284 |
| MaeII | ACGT | 1 cut(s) | 30 |
| MaeIII | GTNAC | 1 cut(s) | 256 |
| MalI | GATC | 1 cut(s) | 226 |
| MboI | GATC | 1 cut(s) | 224 |
| MboII | GAAGA | 4 cut(s) | 37, 253, 278, 325 |
| MlyI | GAGTC | 1 cut(s) | 49 |
| MnlI | CCTC | 4 cut(s) | 57, 124, 172, 337 |
| MseI | TTAA | 1 cut(s) | 15 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 194 |
| NdeII | GATC | 1 cut(s) | 224 |
| NlaIII | CATG | 3 cut(s) | 91, 179, 283 |
| NlaIV | GGNNCC | 2 cut(s) | 106, 135 |
| NmuCI | GTSAC | 1 cut(s) | 256 |
| PagI | TCATGA | 1 cut(s) | 175 |
| PfeI | GAWTC | 2 cut(s) | 182, 209 |
| PkrI | GCNGC | 1 cut(s) | 199 |
| PleI | GAGTC | 1 cut(s) | 48 |
| PpsI | GAGTC | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 2 cut(s) | 106, 135 |
| PstNI | CAGNNNCTG | 1 cut(s) | 233 |
| RsaI | GTAC | 1 cut(s) | 325 |
| RsaNI | GTAC | 1 cut(s) | 324 |
| SaqAI | TTAA | 1 cut(s) | 15 |
| SatI | GCNGC | 1 cut(s) | 198 |
| Sau3AI | GATC | 1 cut(s) | 224 |
| SchI | GAGTC | 1 cut(s) | 49 |
| SetI | ASST | 7 cut(s) | 33, 78, 118, 235, 329, 342, 355 |
| SfaNI | GCATC | 1 cut(s) | 145 |
| SmlI | CTYRAG | 2 cut(s) | 150, 261 |
| SmoI | CTYRAG | 2 cut(s) | 150, 261 |
| SspMI | CTAG | 4 cut(s) | 77, 159, 191, 284 |
| TaiI | ACGT | 1 cut(s) | 33 |
| TfiI | GAWTC | 2 cut(s) | 182, 209 |
| Tru1I | TTAA | 1 cut(s) | 15 |
| Tru9I | TTAA | 1 cut(s) | 15 |
| TseFI | GTSAC | 1 cut(s) | 256 |
| TseI | GCWGC | 1 cut(s) | 197 |
| Tsp45I | GTSAC | 1 cut(s) | 256 |
| TspDTI | ATGAA | 2 cut(s) | 104, 326 |
| XspI | CTAG | 4 cut(s) | 77, 159, 191, 284 |