Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016247

Physical Location & Seq

Genomic Coordinates Reverse (-)

18264383 .. 18267477

Gene Structure 3095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14568.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCTTTCGGGTGGCGGCTAGCGTCCAAGTCGTGGGGGCGTGTCTCTGCTTTTGGGAGGTTCACCGGCGACAAACTCAAGCTCCCAGCTCCCCCACCATATCCATCTGTAAGTCTCATTGTTTTTCAGAATCGCTACCGTTATAGTAGAATTGCTTCTGTAACTGCTGTTACTGCTGTTGTTACACGAGAAAAGCCTCCAAGCAGGGAAGATAAGAAGAACCCAAGGTACTGCCGTTTTCACCAAATAGTGGGACATCCTACTACTCTTGCCTGTCAAACCTTGAGAAAGATCCTCCATGCAAAAATCGACGAGGGTACGCTTGAGCTTCCATCAAAGAAGCAAGCCATAGATGATGACCCATTGCCGAAACGGCATGGAAAGGGTGTTGTACTATCATCACTAGTGGGTCAAGGTTACGCCAACCCTTTCTTCACCGAACATGATTGGAATAACAATTCAGCCGTGGAAGACCAAAAGCGAGCACGCTTCAGCAACAATGATCATTGTTACCAGGCTTATCAAGTCACTGAAGTAGACGATGACATTGTGGAGGCCAATTTCATGCGGAGCAACATGCCTTCTGTCGTGGAAGTGGGGCCAATTCAATCTCTCACCAAATTCTATGTTGTTGACGTTGATACAAGCTACCATGCTCTGCTAGGACGCCCATGGCTAGATAAGCATAAGCTTGTGCCCTCAACTTATCATCAGTGTGTCAAAGGGAGAATTGGACTCAAGCCTGATCTCAACAATAATGAACTCGCTGAGTTGGTGAGGTCAGAAAGTGCTTGCTCCCACACACAACAGCCTCAATGCTCTAGGGTGGTGCTGATAGATGGCCGCACTGTGTACCGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 Retrotrans_gag

Protein Analysis

288

Amino Acids

32.5

Weight (kDa)

9.31

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25685 FvH4_1g29804 FvH4_2g00082 FvH4_2g00083 FvH4_3g31631 FvH4_3g31632 FvH4_4g02081 FvH4_4g14568 FvH4_4g17921 FvH4_6g24054 FvH4_6g31271
rosa_multiflora	Rmu_sc0000744.1_g000132 Rmu_sc0002617.1_g000014
rosa_roxburghii	Rroxscaffold_2G00120830
rosa_samantha	Rh6BG488000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	33, 250
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	4 cut(s)	16, 568, 844, 856
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	841
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	2 cut(s)	475, 552
AcyI	GRCGYC	1 cut(s)	667
AfaI	GTAC	4 cut(s)	230, 319, 393, 854
AfiI	CCNNNNNNNGG	2 cut(s)	33, 250
AgsI	TTSAA	1 cut(s)	608
AhlI	ACTAGT	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	5 cut(s)	82, 89, 328, 648, 691
AluI	AGCT	5 cut(s)	82, 89, 328, 648, 691
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	2 cut(s)	49, 119
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	3 cut(s)	555, 599, 841
ApoI	RAATTY	1 cut(s)	620
Asp700I	GAANNNNTTC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	5 cut(s)	55, 233, 427, 607, 787
AsuNHI	GCTAGC	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	699
BaeI	ACNNNNGTAYC	2 cut(s)	220, 253
BarI	GAAGNNNNNNTAC	2 cut(s)	139, 171
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	487
BccI	CCATC	3 cut(s)	112, 340, 833
BceAI	ACGGC	3 cut(s)	219, 389, 449
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	49, 119
BcuI	ACTAGT	1 cut(s)	403
BfaI	CTAG	5 cut(s)	20, 404, 662, 677, 822
BglI	GCCNNNNNGGC	1 cut(s)	373
BisI	GCNGC	2 cut(s)	17, 844
BlsI	GCNGC	2 cut(s)	18, 845
Bme1390I	CCNGG	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	515
BmtI	GCTAGC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	477
BpuEI	CTTGAG	4 cut(s)	62, 304, 344, 722
BsaHI	GRCGYC	1 cut(s)	667
BsaJI	CCNNGG	3 cut(s)	224, 465, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 250
Bse118I	RCCGGY	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	3 cut(s)	224, 465, 671
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	33, 250
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	759
BseSI	GKGCMC	1 cut(s)	699
BseYI	CCCAGC	1 cut(s)	85
BshFI	GGCC	3 cut(s)	557, 601, 843
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	33, 250
BsmAI	GTCTC	2 cut(s)	49, 119
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	557, 601, 843
Bsp1286I	GDGCHC	2 cut(s)	487, 699
Bsp143I	GATC	3 cut(s)	291, 502, 745
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	4 cut(s)	16, 568, 844, 856
BspANI	GGCC	3 cut(s)	557, 601, 843
BspCNI	CTCAG	1 cut(s)	760
BspLI	GGNNCC	1 cut(s)	600
BspOI	GCTAGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	3 cut(s)	224, 465, 671
BssMI	GATC	3 cut(s)	291, 502, 745
BssNI	GRCGYC	1 cut(s)	667
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	224, 671
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	140, 850
BstACI	GRCGYC	1 cut(s)	667
BstC8I	GCNNGC	5 cut(s)	21, 345, 483, 487, 793
BstDEI	CTNAG	1 cut(s)	768
BstDSI	CCRYGG	2 cut(s)	465, 671
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	294, 505, 748
BstMAI	GTCTC	2 cut(s)	49, 119
BstMBI	GATC	3 cut(s)	291, 502, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 373, 682
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	699
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	557, 601, 843
BtgI	CCRYGG	2 cut(s)	465, 671
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	3 cut(s)	528, 719, 846
Cac8I	GCNNGC	5 cut(s)	21, 345, 483, 487, 793
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	2 cut(s)	12, 675
Csp6I	GTAC	4 cut(s)	229, 318, 392, 853
CviAII	CATG	7 cut(s)	299, 377, 443, 565, 577, 653, 672
CviQI	GTAC	4 cut(s)	229, 318, 392, 853
DdeI	CTNAG	1 cut(s)	768
DpnI	GATC	3 cut(s)	293, 504, 747
DpnII	GATC	3 cut(s)	291, 502, 745
EaeI	YGGCCR	1 cut(s)	841
Eco130I	CCWWGG	2 cut(s)	224, 671
Eco57I	CTGAAG	2 cut(s)	475, 552
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	2 cut(s)	224, 671
ErhI	CCWWGG	2 cut(s)	224, 671
FaeI	CATG	7 cut(s)	302, 380, 446, 568, 580, 656, 675
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	7 cut(s)	298, 376, 442, 564, 576, 652, 671
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	17, 844
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	17, 844
FspBI	CTAG	5 cut(s)	20, 404, 662, 677, 822
GluI	GCNGC	2 cut(s)	17, 844
GsaI	CCCAGC	1 cut(s)	89
HaeIII	GGCC	3 cut(s)	557, 601, 843
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	2 cut(s)	12, 675
Hin1I	GRCGYC	1 cut(s)	667
Hin1II	CATG	7 cut(s)	302, 380, 446, 568, 580, 656, 675
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	2 cut(s)	130, 735
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	5 cut(s)	55, 233, 427, 607, 787
Hpy166II	GTNNAC	4 cut(s)	63, 538, 634, 853
Hpy188I	TCNGA	2 cut(s)	129, 784
Hpy8I	GTNNAC	4 cut(s)	63, 538, 634, 853
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	591
HpyCH4III	ACNGT	2 cut(s)	140, 850
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 373, 682
HpyF3I	CTNAG	1 cut(s)	768
HpySE526I	ACGT	1 cut(s)	636
Hsp92I	GRCGYC	1 cut(s)	667
Hsp92II	CATG	7 cut(s)	302, 380, 446, 568, 580, 656, 675
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	291, 502, 745
LmnI	GCTCC	4 cut(s)	87, 94, 570, 800
LpnPI	CCDG	7 cut(s)	79, 99, 190, 286, 500, 527, 756
MaeI	CTAG	5 cut(s)	20, 404, 662, 677, 822
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	6 cut(s)	160, 169, 181, 416, 509, 526
MalI	GATC	3 cut(s)	293, 504, 747
MboI	GATC	3 cut(s)	291, 502, 745
MboII	GAAGA	4 cut(s)	221, 229, 424, 482
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	2 cut(s)	487, 699
MluCI	AATT	6 cut(s)	150, 457, 559, 603, 620, 729
MlyI	GAGTC	1 cut(s)	729
MnlI	CCTC	8 cut(s)	51, 207, 305, 307, 547, 709, 771, 822
MroXI	GAANNNNTTC	1 cut(s)	154
MslI	CAYNNNNRTG	1 cut(s)	714
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	173, 373, 682
NcoI	CCATGG	1 cut(s)	671
NdeII	GATC	3 cut(s)	291, 502, 745
NheI	GCTAGC	1 cut(s)	19
NlaIII	CATG	7 cut(s)	302, 380, 446, 568, 580, 656, 675
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	130
PflMI	CCANNNNNTGG	2 cut(s)	33, 250
PkrI	GCNGC	2 cut(s)	18, 845
PleI	GAGTC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	599
PsrI	GAACNNNNNNTAC	2 cut(s)	212, 244
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	4 cut(s)	230, 319, 393, 854
RsaNI	GTAC	4 cut(s)	229, 318, 392, 853
RseI	CAYNNNNRTG	1 cut(s)	714
SatI	GCNGC	2 cut(s)	17, 844
Sau3AI	GATC	3 cut(s)	291, 502, 745
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	1 cut(s)	729
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	2 cut(s)	487, 699
SgrAI	CRCCGGYG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	714
SmlI	CTYRAG	4 cut(s)	77, 283, 323, 737
SmoI	CTYRAG	4 cut(s)	77, 283, 323, 737
SpeI	ACTAGT	1 cut(s)	403
Sse9I	AATT	6 cut(s)	150, 457, 559, 603, 620, 729
SsiI	CCGC	4 cut(s)	16, 568, 844, 856
SspMI	CTAG	5 cut(s)	20, 404, 662, 677, 822
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	2 cut(s)	224, 671
TaaI	ACNGT	2 cut(s)	140, 850
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	1 cut(s)	309
TasI	AATT	6 cut(s)	150, 457, 559, 603, 620, 729
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	2 cut(s)	19, 846
TfiI	GAWTC	1 cut(s)	130
TscAI	CASTG	3 cut(s)	535, 719, 853
TseFI	GTSAC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	2 cut(s)	553, 774
TspRI	CASTG	3 cut(s)	535, 719, 853
Van91I	CCANNNNNTGG	2 cut(s)	33, 250
XapI	RAATTY	1 cut(s)	620
XceI	RCATGY	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	5 cut(s)	20, 404, 662, 677, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.