Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016247

Physical Location & Seq

Genomic Coordinates Reverse (-)

18077154 .. 18079816

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24054.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCTCCAAGCAAAAAAAAGGGTGCACGCTCCCAAGAGGCAGTTAGTGAATCCACTACAAGGCGCCAATCCCAGCAGCAGACACAGATAGAGCTCTTGCAGGCTATTAGAGAGCTGAAAAATTCCAACTCTGCACCAAAACCAAGCACTGAGCAGAATGAAAAGGTATCTCAAAAAGAGTCAGCAACTACAGAGGATGTAGTCGTCAAAAAGCCACCTTCAAGGGAAGAAAAGGGTGATCCTCGCTACTGTCGTTACCATCAATTTGTCGGACATCCAAGTCCAGCTTGCCAGGTCTTGCGAAGGATTGTTTATGAGAAGATAAATGATAGAACACTTGAATTATCCACTAAGCGACAATTTATTGATGAAGATCCACTGCTAAAGCGCGAAGGAAAGGAGACATGTGTTATGGGTTATGATACCCTATGGTCATACTTGAACAATCATGCACCTGCAAACCAGTACTTGGCGGCTTTAGTTAATCATGCTAATCAATGCAGGAAAACAAATCAAGTGTACCATTACAATGAAGCAAGCAGGGTTCATTCCCGAGGTGAAACAAGTTGGGCCTACTATGTAACGGAAGTAAAAGATGTGATCGAACAATACCTTAACAAAAACAGTAGGCCTACAGCCACGCAAGTACTCCAGCACAAACCCAAATTCAAGTCCTTGTTAGACCAGTTGGAGTATGGTCCGCAAGCTAGGGAAGCTGCTGCTGAAGCCCTGATGCGCATCTCTAAAGAATATGGGCCACAATATTTTGCTGCGGAGACAAGGAAAATAGTGTCTATGTTGGAAAATGATAATGTTATTATATTCACAAATGCAAACATGGAGGTTTTGTATCCAGACCATAGGAGGCCTCTCTACTTGGAAGCTCAAATAAATGATGTGTTTATGAGAAGAGCACTTGTTGACACGGGGTCCTCATTTAACATCGATCATTCCACTAGCCACCAATGTGTTCAAAGGTGGTGTTGCCTAACGGGCGCACCATCTACTGCTTATAACGGGTTGAGGGGCTTGGTTGCAACTTGTGGAAAGGCCCCAAACAAAGGAGTGTCATGGAAAATGTGTGTCTTAGCACTGAGGAAAGGACTTCTATGGCATCTGAAACTCCGGTCCTTCAAGAAGCGTTACCAGCCCCAAGATGCTTGCAAGATGGATCCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

394

Amino Acids

45.06

Weight (kDa)

9.31

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25685 FvH4_1g29804 FvH4_2g00082 FvH4_2g00083 FvH4_3g31631 FvH4_3g31632 FvH4_4g02081 FvH4_4g14568 FvH4_4g17921 FvH4_6g24054 FvH4_6g31271
rosa_multiflora	Rmu_sc0000744.1_g000132 Rmu_sc0002617.1_g000014
rosa_roxburghii	Rroxscaffold_2G00120830
rosa_samantha	Rh6BG488000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1014
AarI	CACCTGC	1 cut(s)	463
AasI	GACNNNNNNGTC	1 cut(s)	279
Acc16I	TGCGCA	1 cut(s)	737
Acc36I	ACCTGC	1 cut(s)	463
AccB1I	GGYRCC	1 cut(s)	63
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccII	CGCG	1 cut(s)	390
AciI	CCGC	3 cut(s)	473, 701, 773
AclWI	GGATC	4 cut(s)	233, 368, 1166, 1179
AcsI	RAATTY	2 cut(s)	121, 665
AcuI	CTGAAG	1 cut(s)	744
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	3 cut(s)	467, 521, 648
AfiI	CCNNNNNNNGG	3 cut(s)	60, 469, 1061
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	6 cut(s)	222, 341, 442, 670, 974, 1135
AhdI	GACNNNNNGTC	1 cut(s)	928
AjnI	CCWGG	1 cut(s)	291
AleI	CACNNNNGTG	1 cut(s)	966
AluBI	AGCT	6 cut(s)	94, 115, 287, 707, 716, 884
AluI	AGCT	6 cut(s)	94, 115, 287, 707, 716, 884
Alw21I	GWGCWC	3 cut(s)	28, 96, 916
Alw26I	GTCTC	2 cut(s)	395, 770
Alw44I	GTGCAC	1 cut(s)	24
AlwI	GGATC	4 cut(s)	233, 368, 1166, 1179
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	5 cut(s)	570, 629, 755, 866, 1050
ApaLI	GTGCAC	1 cut(s)	24
ApeKI	GCWGC	4 cut(s)	76, 716, 719, 770
ApoI	RAATTY	2 cut(s)	121, 665
AspLEI	GCGC	4 cut(s)	66, 390, 738, 998
AspS9I	GGNCC	6 cut(s)	570, 698, 755, 930, 1051, 1128
AsuHPI	GGTGA	2 cut(s)	248, 569
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	3 cut(s)	698, 930, 1128
BaeGI	GKGCMC	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	1171
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	3 cut(s)	28, 96, 916
BbvI	GCAGC	4 cut(s)	88, 703, 706, 757
BccI	CCATC	3 cut(s)	267, 1009, 1162
BciT130I	CCWGG	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	861
BcoDI	GTCTC	2 cut(s)	395, 770
BfaI	CTAG	2 cut(s)	708, 957
BfmI	CTRYAG	2 cut(s)	189, 633
BfoI	RGCGCY	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	463
BfuI	GTATCC	1 cut(s)	861
BglI	GCCNNNNNGGC	1 cut(s)	993
BisI	GCNGC	5 cut(s)	77, 474, 717, 720, 771
BlsI	GCNGC	5 cut(s)	78, 475, 718, 721, 772
BmcAI	AGTACT	2 cut(s)	467, 648
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	3 cut(s)	698, 930, 1128
BmeRI	GACNNNNNGTC	1 cut(s)	928
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	6 cut(s)	570, 698, 755, 930, 1051, 1128
BmiI	GGNNCC	5 cut(s)	6, 65, 931, 1053, 1173
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	4 cut(s)	723, 747, 1123, 1147
BpmI	CTGGAG	1 cut(s)	635
Bsa29I	ATCGAT	1 cut(s)	945
BsaBI	GATNNNNATC	2 cut(s)	372, 737
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	553
BsaWI	WCCGGW	1 cut(s)	1125
BsaXI	ACNNNNNCTCC	2 cut(s)	833, 863
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 469, 1061
Bse1I	ACTGG	2 cut(s)	463, 685
Bse8I	GATNNNNATC	2 cut(s)	372, 737
BseBI	CCWGG	1 cut(s)	293
BseCI	ATCGAT	1 cut(s)	945
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	2 cut(s)	202, 274
BseJI	GATNNNNATC	2 cut(s)	372, 737
BseLI	CCNNNNNNNGG	3 cut(s)	60, 469, 1061
BseMII	CTCAG	2 cut(s)	141, 1085
BseNI	ACTGG	2 cut(s)	463, 685
BseSI	GKGCMC	1 cut(s)	28
BseXI	GCAGC	4 cut(s)	88, 703, 706, 757
BseYI	CCCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	5 cut(s)	572, 631, 757, 868, 1052
BshNI	GGYRCC	1 cut(s)	63
BshVI	ATCGAT	1 cut(s)	945
BsiHKAI	GWGCWC	3 cut(s)	28, 96, 916
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	1126
BslI	CCNNNNNNNGG	3 cut(s)	60, 469, 1061
BsmAI	GTCTC	2 cut(s)	395, 770
BsnI	GGCC	5 cut(s)	572, 631, 757, 868, 1052
BsoBI	CYCGRG	1 cut(s)	552
Bsp1286I	GDGCHC	3 cut(s)	28, 96, 916
Bsp143I	GATC	5 cut(s)	238, 373, 600, 946, 1171
BspACI	CCGC	3 cut(s)	473, 701, 773
BspANI	GGCC	5 cut(s)	572, 631, 757, 868, 1052
BspCNI	CTCAG	2 cut(s)	142, 1086
BspDI	ATCGAT	1 cut(s)	945
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	5 cut(s)	6, 65, 931, 1053, 1173
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	4 cut(s)	233, 368, 1166, 1179
BspQI	GCTCTTC	1 cut(s)	904
BspT107I	GGYRCC	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	463, 685
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	5 cut(s)	238, 373, 600, 946, 1171
BssNI	GRCGYC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	251, 626
Bst6I	CTCTTC	1 cut(s)	904
BstACI	GRCGYC	1 cut(s)	64
BstC8I	GCNNGC	6 cut(s)	28, 102, 289, 538, 705, 1162
BstDEI	CTNAG	4 cut(s)	150, 351, 1087, 1094
BstF5I	GGATG	2 cut(s)	202, 274
BstFNI	CGCG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	4 cut(s)	66, 390, 738, 998
BstKTI	GATC	5 cut(s)	241, 376, 603, 949, 1174
BstMAI	GTCTC	2 cut(s)	395, 770
BstMBI	GATC	5 cut(s)	238, 373, 600, 946, 1171
BstMWI	GCNNNNNNNGC	4 cut(s)	713, 725, 993, 1147
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	2 cut(s)	189, 633
BstSLI	GKGCMC	1 cut(s)	28
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	4 cut(s)	88, 703, 706, 757
BstX2I	RGATCY	2 cut(s)	373, 1171
BstYI	RGATCY	2 cut(s)	373, 1171
Bsu15I	ATCGAT	1 cut(s)	945
BsuI	GTATCC	1 cut(s)	861
BsuRI	GGCC	5 cut(s)	572, 631, 757, 868, 1052
BsuTUI	ATCGAT	1 cut(s)	945
BtsCI	GGATG	2 cut(s)	202, 274
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	3 cut(s)	147, 377, 1091
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	6 cut(s)	28, 102, 289, 538, 705, 1162
CfoI	GCGC	4 cut(s)	66, 390, 738, 998
Cfr13I	GGNCC	6 cut(s)	570, 698, 755, 930, 1051, 1128
ClaI	ATCGAT	1 cut(s)	945
Csp6I	GTAC	3 cut(s)	466, 520, 647
CviAII	CATG	5 cut(s)	405, 449, 488, 838, 1071
CviQI	GTAC	3 cut(s)	466, 520, 647
DdeI	CTNAG	4 cut(s)	150, 351, 1087, 1094
DinI	GGCGCC	1 cut(s)	65
DpnI	GATC	5 cut(s)	240, 375, 602, 948, 1173
DpnII	GATC	5 cut(s)	238, 373, 600, 946, 1171
DrdI	GACNNNNNNGTC	1 cut(s)	279
DriI	GACNNNNNGTC	1 cut(s)	928
DseDI	GACNNNNNNGTC	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	904
Eam1105I	GACNNNNNGTC	1 cut(s)	928
EarI	CTCTTC	1 cut(s)	904
Ecl136II	GAGCTC	1 cut(s)	94
Eco147I	AGGCCT	2 cut(s)	631, 868
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	3 cut(s)	698, 930, 1128
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	744
Eco88I	CYCGRG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	930, 1051
EcoRII	CCWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	96
EgeI	GGCGCC	1 cut(s)	65
EheI	GGCGCC	1 cut(s)	65
FaeI	CATG	5 cut(s)	408, 452, 491, 841, 1074
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FatI	CATG	5 cut(s)	404, 448, 487, 837, 1070
Fnu4HI	GCNGC	5 cut(s)	77, 474, 717, 720, 771
FokI	GGATG	2 cut(s)	209, 261
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	5 cut(s)	77, 474, 717, 720, 771
FspAI	RTGCGCAY	1 cut(s)	737
FspBI	CTAG	2 cut(s)	708, 957
FspI	TGCGCA	1 cut(s)	737
GlaI	GCGC	4 cut(s)	65, 389, 737, 997
GluI	GCNGC	5 cut(s)	77, 474, 717, 720, 771
GsaI	CCCAGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	635
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	5 cut(s)	572, 631, 757, 868, 1052
HapII	CCGG	1 cut(s)	1126
HhaI	GCGC	4 cut(s)	66, 390, 738, 998
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	5 cut(s)	408, 452, 491, 841, 1074
Hin6I	GCGC	4 cut(s)	64, 388, 736, 996
HinP1I	GCGC	4 cut(s)	64, 388, 736, 996
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HinfI	GANTC	2 cut(s)	50, 179
HpaII	CCGG	1 cut(s)	1126
HphI	GGTGA	2 cut(s)	248, 569
Hpy166II	GTNNAC	3 cut(s)	26, 520, 922
Hpy188I	TCNGA	2 cut(s)	272, 1119
Hpy188III	TCNNGA	3 cut(s)	552, 854, 1135
Hpy8I	GTNNAC	3 cut(s)	26, 520, 922
HpyAV	CCTTC	4 cut(s)	228, 297, 386, 1141
HpyCH4III	ACNGT	2 cut(s)	251, 626
HpyCH4V	TGCA	9 cut(s)	26, 100, 134, 452, 458, 501, 833, 1037, 1164
HpyF10VI	GCNNNNNNNGC	4 cut(s)	713, 725, 993, 1147
HpyF3I	CTNAG	4 cut(s)	150, 351, 1087, 1094
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	408, 452, 491, 841, 1074
HspAI	GCGC	4 cut(s)	64, 388, 736, 996
KasI	GGCGCC	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	238, 373, 600, 946, 1171
LguI	GCTCTTC	1 cut(s)	904
LmnI	GCTCC	2 cut(s)	10, 35
Lsp1109I	GCAGC	4 cut(s)	88, 703, 706, 757
LweI	GCATC	4 cut(s)	723, 747, 1123, 1147
MaeI	CTAG	2 cut(s)	708, 957
MaeIII	GTNAC	3 cut(s)	254, 580, 1142
MalI	GATC	5 cut(s)	240, 375, 602, 948, 1173
MboI	GATC	5 cut(s)	238, 373, 600, 946, 1171
MboII	GAAGA	4 cut(s)	239, 331, 383, 921
MflI	RGATCY	2 cut(s)	373, 1171
MhlI	GDGCHC	3 cut(s)	28, 96, 916
MluCI	AATT	5 cut(s)	121, 263, 341, 359, 665
Mly113I	GGCGCC	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	4 cut(s)	150, 250, 669, 780
MseI	TTAA	3 cut(s)	483, 615, 939
MslI	CAYNNNNRTG	2 cut(s)	528, 966
MspI	CCGG	1 cut(s)	1126
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	713, 725, 993, 1147
NarI	GGCGCC	1 cut(s)	64
NdeII	GATC	5 cut(s)	238, 373, 600, 946, 1171
NlaIII	CATG	5 cut(s)	408, 452, 491, 841, 1074
NlaIV	GGNNCC	5 cut(s)	6, 65, 931, 1053, 1173
NsbI	TGCGCA	1 cut(s)	737
NspI	RCATGY	1 cut(s)	408
OliI	CACNNNNGTG	1 cut(s)	966
PaqCI	CACCTGC	1 cut(s)	463
PceI	AGGCCT	2 cut(s)	631, 868
PciI	ACATGT	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	904
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	5 cut(s)	78, 475, 718, 721, 772
PleI	GAGTC	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	930
PscI	ACATGT	1 cut(s)	404
PsiI	TTATAA	1 cut(s)	1014
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	930
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	5 cut(s)	6, 65, 931, 1053, 1173
PspPI	GGNCC	6 cut(s)	570, 698, 755, 930, 1051, 1128
PspPPI	RGGWCCY	1 cut(s)	930
PsuI	RGATCY	2 cut(s)	373, 1171
RsaI	GTAC	3 cut(s)	467, 521, 648
RsaNI	GTAC	3 cut(s)	466, 520, 647
RseI	CAYNNNNRTG	2 cut(s)	528, 966
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	904
SaqAI	TTAA	3 cut(s)	483, 615, 939
SatI	GCNGC	5 cut(s)	77, 474, 717, 720, 771
Sau3AI	GATC	5 cut(s)	238, 373, 600, 946, 1171
Sau96I	GGNCC	6 cut(s)	570, 698, 755, 930, 1051, 1128
ScaI	AGTACT	2 cut(s)	467, 648
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	3 cut(s)	28, 96, 916
SfaNI	GCATC	4 cut(s)	723, 747, 1123, 1147
SfcI	CTRYAG	2 cut(s)	189, 633
SfoI	GGCGCC	1 cut(s)	65
SinI	GGWCC	3 cut(s)	698, 930, 1128
SmiMI	CAYNNNNRTG	2 cut(s)	528, 966
Sse9I	AATT	5 cut(s)	121, 263, 341, 359, 665
SseBI	AGGCCT	2 cut(s)	631, 868
SsiI	CCGC	3 cut(s)	473, 701, 773
SspDI	GGCGCC	1 cut(s)	63
SspI	AATATT	1 cut(s)	764
SspMI	CTAG	2 cut(s)	708, 957
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	2 cut(s)	631, 868
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	251, 626
TaqI	TCGA	2 cut(s)	603, 945
TasI	AATT	5 cut(s)	121, 263, 341, 359, 665
TatI	WGTACW	2 cut(s)	465, 646
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	3 cut(s)	483, 615, 939
Tru9I	TTAA	3 cut(s)	483, 615, 939
TscAI	CASTG	3 cut(s)	154, 384, 1098
TseI	GCWGC	4 cut(s)	76, 716, 719, 770
TspDTI	ATGAA	4 cut(s)	174, 384, 536, 546
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	3 cut(s)	154, 384, 1098
Van91I	CCANNNNNTGG	1 cut(s)	469
VneI	GTGCAC	1 cut(s)	24
VpaK11BI	GGWCC	3 cut(s)	698, 930, 1128
XapI	RAATTY	2 cut(s)	121, 665
XceI	RCATGY	1 cut(s)	408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	692
XspI	CTAG	2 cut(s)	708, 957
ZrmI	AGTACT	2 cut(s)	467, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.