Rh6BG488000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
69201191 .. 69201689
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG488000.1

Sequence Viewer

Length: 312 bp
ATGCTTTCACATAAAGATCAAAACTTTACCACAACCCAGATGAAAAAAGTTACCTTCTTGGCTGGTCGAAGCTTCTTGATCCAAGCAAACTGGCTTCCGATTGAGGAAAGAGTTGAAAGCAAAGATCTTTGGAAGAGTAATGGGTGGCTTTCTGTAACTGAAGCCTTGGGTGCTTCTATGGTGGCCTTTTCTGGTAGCCAAGATGAGAAGCATCTCAGAAACGGTAACGGTTTCTTCTTCTGGGTTCAATCTCCGATCTACTACTTCTTCGATGCGCTAAAAACCTGCACGACTGCACCACTGTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.73

Weight (kDa)

7.89

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 293
AclWI GGATC 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 116, 248
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
AlwI GGATC 1 cut(s) 73
AoxI GGCC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 293
BglII AGATCT 1 cut(s) 124
BmsI GCATC 2 cut(s) 220, 262
BsaJI CCNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 95
BsgI GTGCAG 2 cut(s) 271, 279
BshFI GGCC 1 cut(s) 185
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 4 cut(s) 16, 78, 124, 255
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 4 cut(s) 16, 78, 124, 255
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 224, 230, 303
Bst6I CTCTTC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 4 cut(s) 19, 81, 127, 258
BstMBI GATC 4 cut(s) 16, 78, 124, 255
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 299
BveI ACCTGC 1 cut(s) 293
CfoI GCGC 1 cut(s) 277
CviJI RGCY 7 cut(s) 62, 72, 94, 148, 164, 185, 198
CviKI_1 RGCY 7 cut(s) 62, 72, 94, 148, 164, 185, 198
DdeI CTNAG 1 cut(s) 215
DpnI GATC 4 cut(s) 18, 80, 126, 257
DpnII GATC 4 cut(s) 16, 78, 124, 255
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaiI YATR 2 cut(s) 12, 179
GlaI GCGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 185
HhaI GCGC 1 cut(s) 277
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 70
Hpy188I TCNGA 3 cut(s) 99, 218, 255
Hpy188III TCNNGA 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 3 cut(s) 224, 230, 303
HpyCH4V TGCA 2 cut(s) 288, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 215
HspAI GCGC 1 cut(s) 275
Kzo9I GATC 4 cut(s) 16, 78, 124, 255
LpnPI CCDG 6 cut(s) 48, 50, 76, 177, 226, 298
LweI GCATC 2 cut(s) 220, 262
MaeIII GTNAC 3 cut(s) 49, 154, 224
MalI GATC 4 cut(s) 18, 80, 126, 257
MboI GATC 4 cut(s) 16, 78, 124, 255
MboII GAAGA 4 cut(s) 145, 226, 229, 259
MflI RGATCY 1 cut(s) 124
MnlI CCTC 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 4 cut(s) 16, 78, 124, 255
PsuI RGATCY 1 cut(s) 124
Sau3AI GATC 4 cut(s) 16, 78, 124, 255
SetI ASST 3 cut(s) 56, 74, 287
SfaNI GCATC 2 cut(s) 220, 262
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 224, 230, 303
TaqI TCGA 2 cut(s) 67, 270
TscAI CASTG 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.