Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016247

Physical Location & Seq

Genomic Coordinates Forward (+)

26005102 .. 26005563

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31632.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTGCCAAAGATCAAGCGAAAATCTAGTTGAATTTGTGAGGTGTTACAGAGACCTTGCTCTAGATTGCTACAATGAGAAAGGAGAAGCAGCTTTGGTGGAGATCTGTGTTGGTAACATGTTACATGAATACCGGGTGTACCTTGAGAATGCCAACATAGGTACATTTTCACGGTTGATGGATGCTATAAAAAAGACAAGCATGTCTGTCAAGGTTATTAATGAGAATAGAACATGGAGGTCAGAGAAGGATACACATCAAGCATTGGCAATTGGTGATAGGCACTCAAACTCAAATAAGCGCAAGGATAGAGAAATTTATCACACTCTACCATGTTGCGACGAGGAACTCAATGCTATCTTGGATACCATGTTTGCCGATGGTCTAATCAAGCCACCACATCCATACAAAAACCCATCTCGGGAAGACAGAGCAGACCCACATTACTATAGGTACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 Retrotrans_gag

Protein Analysis

154

Amino Acids

17.92

Weight (kDa)

6.38

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25685 FvH4_1g29804 FvH4_2g00082 FvH4_2g00083 FvH4_3g31631 FvH4_3g31632 FvH4_4g02081 FvH4_4g14568 FvH4_4g17921 FvH4_6g24054 FvH4_6g31271
rosa_multiflora	Rmu_sc0000744.1_g000132 Rmu_sc0002617.1_g000014
rosa_roxburghii	Rroxscaffold_2G00120830
rosa_samantha	Rh6BG488000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	453
AcsI	RAATTY	2 cut(s)	32, 315
AfaI	GTAC	3 cut(s)	140, 163, 455
AfiI	CCNNNNNNNGG	1 cut(s)	421
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	420
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	32, 315
AseI	ATTAAT	1 cut(s)	219
Asp718I	GGTACC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	3 cut(s)	172, 374, 424
BciVI	GTATCC	2 cut(s)	244, 358
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	2 cut(s)	26, 62
BfmI	CTRYAG	1 cut(s)	448
BfuI	GTATCC	2 cut(s)	244, 358
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	420
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse8I	GATNNNNATC	1 cut(s)	255
BseGI	GGATG	2 cut(s)	187, 400
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	11, 102
BspLI	GGNNCC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	45
BssMI	GATC	2 cut(s)	11, 102
Bst4CI	ACNGT	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	187, 400
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	2 cut(s)	14, 105
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	2 cut(s)	11, 102
BstNSI	RCATGY	2 cut(s)	121, 205
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuI	GTATCC	2 cut(s)	244, 358
BtsCI	GGATG	2 cut(s)	187, 400
CfoI	GCGC	1 cut(s)	303
Csp6I	GTAC	3 cut(s)	139, 162, 454
CviAII	CATG	6 cut(s)	118, 125, 202, 234, 333, 370
CviJI	RGCY	2 cut(s)	92, 394
CviKI_1	RGCY	2 cut(s)	92, 394
CviQI	GTAC	3 cut(s)	139, 162, 454
DpnI	GATC	2 cut(s)	13, 104
DpnII	GATC	2 cut(s)	11, 102
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	420
FaeI	CATG	6 cut(s)	121, 128, 205, 237, 336, 373
FatI	CATG	6 cut(s)	117, 124, 201, 233, 332, 369
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	194, 387
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	26, 62
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	90
HapII	CCGG	1 cut(s)	133
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	6 cut(s)	121, 128, 205, 237, 336, 373
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	62, 422
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	174
Hsp92II	CATG	6 cut(s)	121, 128, 205, 237, 336, 373
HspAI	GCGC	1 cut(s)	301
KpnI	GGTACC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	11, 102
LpnPI	CCDG	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	26, 62
MaeIII	GTNAC	3 cut(s)	44, 113, 120
MalI	GATC	2 cut(s)	13, 104
MboI	GATC	2 cut(s)	11, 102
MboII	GAAGA	1 cut(s)	437
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	3 cut(s)	32, 270, 315
MnlI	CCTC	3 cut(s)	33, 231, 337
MseI	TTAA	1 cut(s)	219
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	11, 102
NlaIII	CATG	6 cut(s)	121, 128, 205, 237, 336, 373
NlaIV	GGNNCC	1 cut(s)	455
NspI	RCATGY	2 cut(s)	121, 205
PciI	ACATGT	1 cut(s)	117
PctI	GAATGC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	91
PscI	ACATGT	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	3 cut(s)	140, 163, 455
RsaNI	GTAC	3 cut(s)	139, 162, 454
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	11, 102
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	8 cut(s)	44, 57, 94, 144, 163, 216, 242, 455
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	32, 270, 315
SspMI	CTAG	2 cut(s)	26, 62
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	174
TasI	AATT	3 cut(s)	32, 270, 315
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	141
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	2 cut(s)	32, 315
XbaI	TCTAGA	1 cut(s)	61
XceI	RCATGY	2 cut(s)	121, 205
XspI	CTAG	2 cut(s)	26, 62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.