FvH4_2g02310

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014651
Physical Location & Seq
Reverse (-)
1910438 .. 1913282
2845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02310.t1

Sequence Viewer

Length: 426 bp
ATGGCTGAAATGTTTAAGCCATATGCCATATCCCACAGAAAACACAAACTGTATACACACACACACACACACAGGCACAGAAACACAACTAAAGAAATCAGCATCCTAAGTCTCCTCTATTATAACAGCTTTCTTCAAATCTATCCAGTATCCACACAAACAATGGGTATCAAATTGCTATCAGCCATTCGACGATCTCTCCATATGGCTAAGCAATCGAGTATGGCTACTACAGATGTTCCTAAGGGCCACTTTGCTGTTTATGTGGGAGAGGAACATAAAAGGCGATTCATAATACCAGTATCATACTTGAACCAGAAATGGTTCAAAGACCTGCTGAGTTGTTCTGAGGAAAAGTTTGGATTCACTCATCCAATGGGTGGCATCACTATACCATGCACTGAAGAGGCCTTCATTGACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

142

Amino Acids

16.4

Weight (kDa)

9.52

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 66 - 138 2.7e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
Acc36I ACCTGC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 380
AccI GTMKAC 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 423
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 3 cut(s) 137, 313, 328
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 2 cut(s) 247, 408
Asp700I GAANNNNTTC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 243
BciVI GTATCC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 342
BfuI GTATCC 1 cut(s) 160
BlpI GCTNAGC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 247
BmsI GCATC 2 cut(s) 111, 393
Bpu1102I GCTNAGC 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 2 cut(s) 146, 299
Bse21I CCTNAGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 102, 370
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 2 cut(s) 329, 339
BseNI ACTGG 2 cut(s) 146, 299
BseRI GAGGAG 1 cut(s) 104
BshFI GGCC 2 cut(s) 249, 410
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 2 cut(s) 249, 410
Bsp143I GATC 1 cut(s) 194
Bsp1720I GCTNAGC 1 cut(s) 210
BspANI GGCC 2 cut(s) 249, 410
BspCNI CTCAG 2 cut(s) 330, 340
BspMI ACCTGC 1 cut(s) 342
BsrI ACTGG 2 cut(s) 146, 299
BssMI GATC 1 cut(s) 194
BssNAI GTATAC 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 399
BstDEI CTNAG 5 cut(s) 107, 210, 243, 338, 348
BstF5I GGATG 2 cut(s) 102, 370
BstKTI GATC 1 cut(s) 197
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 231
BstZ17I GTATAC 1 cut(s) 54
Bsu36I CCTNAGG 1 cut(s) 243
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 2 cut(s) 249, 410
BtsCI GGATG 2 cut(s) 102, 370
BtsIMutI CAGTG 1 cut(s) 399
BveI ACCTGC 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 247
CviAII CATG 1 cut(s) 396
CviJI RGCY 8 cut(s) 5, 19, 129, 185, 209, 227, 249, 410
CviKI_1 RGCY 8 cut(s) 5, 19, 129, 185, 209, 227, 249, 410
DdeI CTNAG 5 cut(s) 107, 210, 243, 338, 348
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 423
Eco81I CCTNAGG 1 cut(s) 243
FaeI CATG 1 cut(s) 399
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 1 cut(s) 395
FauNDI CATATG 2 cut(s) 22, 204
FblI GTMKAC 1 cut(s) 53
FokI GGATG 2 cut(s) 89, 357
HaeIII GGCC 2 cut(s) 249, 410
Hin1II CATG 1 cut(s) 399
HinfI GANTC 2 cut(s) 288, 363
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 349
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 399
HpyF3I CTNAG 5 cut(s) 107, 210, 243, 338, 348
Hsp92II CATG 1 cut(s) 399
Kzo9I GATC 1 cut(s) 194
LpnPI CCDG 5 cut(s) 58, 159, 312, 329, 347
LweI GCATC 2 cut(s) 111, 393
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 2 cut(s) 125, 416
MluCI AATT 1 cut(s) 173
MnlI CCTC 4 cut(s) 125, 265, 343, 400
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 1 cut(s) 15
NdeI CATATG 2 cut(s) 22, 204
NdeII GATC 1 cut(s) 194
NlaIII CATG 1 cut(s) 399
PceI AGGCCT 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 2 cut(s) 288, 363
PflMI CCANNNNNTGG 1 cut(s) 380
PsiI TTATAA 1 cut(s) 123
PspPI GGNCC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 247
SetI ASST 2 cut(s) 131, 336
SfaNI GCATC 2 cut(s) 111, 393
SfcI CTRYAG 1 cut(s) 231
SgeI CNNG 8 cut(s) 85, 158, 231, 311, 322, 328, 346, 408
Sse9I AATT 1 cut(s) 173
SseBI AGGCCT 1 cut(s) 410
StuI AGGCCT 1 cut(s) 410
TaaI ACNGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 190, 218
TasI AATT 1 cut(s) 173
TfiI GAWTC 2 cut(s) 288, 363
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 280, 403
TspRI CASTG 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.