MD05G1113500.v1.1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014651
Physical Location & Seq
Forward (+)
23236666 .. 23236950
285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1113500.v1.1.491

Sequence Viewer

Length: 285 bp
ATGAGCTTGATGTTGATCATCCGGCGATCTCTCTTGATTGCTAAGCAATCGAGTATGACCACAAAGAATGTCCCAAAAGGCGACTTTGCTGTTTATGTAGGAGAGGAACAGAAGAAGAAACTTGTAGTTTCTATGTCATACTTGAACCACCAATGGTTCCAAGACTTGCTAAGCTGTGAAGAGAAGTTCGGATTCACTCATCGGAAGGGTGGCATCACCATTCCATGCATTGAAGAGGCCTTCATTGGTCTCAGTTCTTGTTTGCATGCCTTGTATCTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

95

Amino Acids

10.7

Weight (kDa)

8.49

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 84 2e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 145, 233
AluBI AGCT 2 cut(s) 6, 174
AluI AGCT 2 cut(s) 6, 174
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 208
BclI TGATCA 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 254
BlpI GCTNAGC 2 cut(s) 42, 170
BmiI GGNNCC 1 cut(s) 158
BmsI GCATC 1 cut(s) 222
Bpu1102I GCTNAGC 2 cut(s) 42, 170
BsaBI GATNNNNATC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 254
Bse8I GATNNNNATC 1 cut(s) 14
BseGI GGATG 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 14
BseMII CTCAG 1 cut(s) 265
BshFI GGCC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 15, 26
Bsp1720I GCTNAGC 2 cut(s) 42, 170
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 254
BssMI GATC 2 cut(s) 15, 26
Bst6I CTCTTC 2 cut(s) 174, 228
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 42, 170, 251
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 2 cut(s) 18, 29
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 2 cut(s) 15, 26
BstNSI RCATGY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 267
CviAII CATG 2 cut(s) 225, 266
CviJI RGCY 3 cut(s) 6, 174, 239
CviKI_1 RGCY 3 cut(s) 6, 174, 239
DdeI CTNAG 3 cut(s) 42, 170, 251
DpnI GATC 2 cut(s) 17, 28
DpnII GATC 2 cut(s) 15, 26
Eam1104I CTCTTC 2 cut(s) 174, 228
EarI CTCTTC 2 cut(s) 174, 228
Eco147I AGGCCT 1 cut(s) 239
Eco31I GGTCTC 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 230
FaeI CATG 2 cut(s) 228, 269
FaiI YATR 6 cut(s) 56, 96, 134, 139, 226, 267
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 224, 265
FbaI TGATCA 1 cut(s) 15
FokI GGATG 1 cut(s) 5
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 22
Hin1II CATG 2 cut(s) 228, 269
HinfI GANTC 1 cut(s) 192
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 191, 204
Hpy188III TCNNGA 2 cut(s) 34, 278
HpyAV CCTTC 2 cut(s) 199, 250
HpyCH4V TGCA 2 cut(s) 228, 265
HpyF3I CTNAG 3 cut(s) 42, 170, 251
Hsp92II CATG 2 cut(s) 228, 269
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 2 cut(s) 15, 26
LpnPI CCDG 1 cut(s) 35
LweI GCATC 1 cut(s) 222
MalI GATC 2 cut(s) 17, 28
MboI GATC 2 cut(s) 15, 26
MboII GAAGA 4 cut(s) 124, 127, 191, 245
MnlI CCTC 2 cut(s) 97, 229
Mph1103I ATGCAT 1 cut(s) 230
MspI CCGG 1 cut(s) 22
NdeII GATC 2 cut(s) 15, 26
NlaIII CATG 2 cut(s) 228, 269
NlaIV GGNNCC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 230
NspI RCATGY 1 cut(s) 269
PaeI GCATGC 1 cut(s) 269
PceI AGGCCT 1 cut(s) 239
PfeI GAWTC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 158
Sau3AI GATC 2 cut(s) 15, 26
SetI ASST 2 cut(s) 8, 176
SfaNI GCATC 1 cut(s) 222
SphI GCATGC 1 cut(s) 269
SseBI AGGCCT 1 cut(s) 239
StuI AGGCCT 1 cut(s) 239
TaqI TCGA 2 cut(s) 50, 279
TfiI GAWTC 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 232
XceI RCATGY 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.