Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014651

Physical Location & Seq

Genomic Coordinates Forward (+)

23165138 .. 23165296

Gene Structure 159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1113200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGGTTTGAGCTTGCTATCAATCATCCGGCGATCTTTCTTGACGGGTAAGCAATCGAGGATAAGTACAGCGAATGTCCCAAAAGGCCACTTTGCTGTATATGTAGGAGAGGAGCAGAAGAAGAGACTTGTAGTACCAATATCATACTTGATCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

53

Amino Acids

5.84

Weight (kDa)

10.62

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	17 - 52	6.4e-08	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014651)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02310 FvH4_2g02320
malus_domestica	MD05G1113200.v1.1 MD05G1113400.v1.1 MD05G1113500.v1.1
prunus_persica	Prupe.8G157800_v2.0.a1 Prupe.8G157900_v2.0.a1
pyrus_communis	pycom05g10840 pycom10g10020
rosa_chinensis	RchiOBHm_Chr6g0246061 RchiOBHm_Chr6g0246071
rosa_multiflora	Rmu_sc0004042.1_g000008
rosa_roxburghii	Rroxscaffold_7G00214980
rosa_rugosa	Rorug05G0518700.1 Rorug05G0518800 Rorug05G0518900
rosa_wichuraiana	Rw6G002690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	145
AfaI	GTAC	2 cut(s)	67, 135
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	32, 150
BspANI	GGCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	145
BssMI	GATC	2 cut(s)	32, 150
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	2 cut(s)	35, 153
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	2 cut(s)	32, 150
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	66, 134
CviJI	RGCY	2 cut(s)	12, 87
CviKI_1	RGCY	2 cut(s)	12, 87
CviQI	GTAC	2 cut(s)	66, 134
DpnI	GATC	2 cut(s)	34, 152
DpnII	GATC	2 cut(s)	32, 150
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
FaiI	YATR	3 cut(s)	100, 102, 145
FaqI	GGGAC	1 cut(s)	62
FokI	GGATG	1 cut(s)	11
FspBI	CTAG	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	28
HpaII	CCGG	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	32, 150
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	1 cut(s)	41
MaeI	CTAG	1 cut(s)	157
MalI	GATC	2 cut(s)	34, 152
MboI	GATC	2 cut(s)	32, 150
MboII	GAAGA	2 cut(s)	130, 133
MnlI	CCTC	2 cut(s)	51, 103
MspI	CCGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	32, 150
RsaI	GTAC	2 cut(s)	67, 135
RsaNI	GTAC	2 cut(s)	66, 134
Sau3AI	GATC	2 cut(s)	32, 150
SetI	ASST	1 cut(s)	14
SgeI	CNNG	6 cut(s)	25, 40, 52, 57, 69, 140
SspMI	CTAG	1 cut(s)	157
TaqI	TCGA	1 cut(s)	56
TatI	WGTACW	1 cut(s)	65
XspI	CTAG	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.