MD05G1113400.v1.1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014651
Physical Location & Seq
Forward (+)
23191697 .. 23191981
285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1113400.v1.1.491

Sequence Viewer

Length: 285 bp
ATGGGTCTGAGCTTGCTATCGATCATCCGGCGATCTATCTTGACGTCTAAGCAATCGAGCATGGCTTCAACGAATGTCCCAAAAGGCCACTTTGCTGTTTATGTCGGAGAGGAACAGAAAAGGAGACTTGTAGTTCCTATATCATACTTGAACCACCAGTGGTTCCAAGACTTGTTAAGTTGCAGTGAGGAAAAGTTTGGATTCACTCATCCAATGGGCGGCATCACCATTCCATGCACCGAAGAGACCTTCACATGTCACATTTGTTGTTTACAATCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

95

Amino Acids

10.61

Weight (kDa)

7.68

Isoelectric Point (pI)

84.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 91 1.2e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 47
AciI CCGC 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 2 cut(s) 69, 151
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw26I GTCTC 2 cut(s) 118, 239
AoxI GGCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 118, 239
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 164
BmsI GCATC 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 20
BseGI GGATG 2 cut(s) 24, 208
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 157
BshFI GGCC 1 cut(s) 87
BshVI ATCGAT 1 cut(s) 20
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 118, 239
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 21, 32
BspACI CCGC 1 cut(s) 219
BspANI GGCC 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 157
BssMI GATC 2 cut(s) 21, 32
BssNI GRCGYC 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 2 cut(s) 8, 48
BstF5I GGATG 2 cut(s) 24, 208
BstKTI GATC 2 cut(s) 24, 35
BstMAI GTCTC 2 cut(s) 118, 239
BstMBI GATC 2 cut(s) 21, 32
BstNSI RCATGY 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 20
BsuRI GGCC 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 20
BtsCI GGATG 2 cut(s) 24, 208
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 164, 190
Cac8I GCNNGC 1 cut(s) 14
ClaI ATCGAT 1 cut(s) 20
CviAII CATG 3 cut(s) 61, 234, 255
CviJI RGCY 3 cut(s) 12, 65, 87
CviKI_1 RGCY 3 cut(s) 12, 65, 87
DdeI CTNAG 2 cut(s) 8, 48
DpnI GATC 2 cut(s) 23, 34
DpnII GATC 2 cut(s) 21, 32
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 239
FaeI CATG 3 cut(s) 64, 237, 258
FaiI YATR 6 cut(s) 62, 102, 140, 145, 235, 256
FaqI GGGAC 1 cut(s) 62
FatI CATG 3 cut(s) 60, 233, 254
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 2 cut(s) 11, 195
Fsp4HI GCNGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 1 cut(s) 87
HapII CCGG 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 3 cut(s) 64, 237, 258
HinfI GANTC 1 cut(s) 201
HpaII CCGG 1 cut(s) 28
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 9, 107
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 183, 237
HpyF3I CTNAG 2 cut(s) 8, 48
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 3 cut(s) 64, 237, 258
Kzo9I GATC 2 cut(s) 21, 32
LpnPI CCDG 2 cut(s) 41, 170
LweI GCATC 1 cut(s) 231
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 257
MalI GATC 2 cut(s) 23, 34
MboI GATC 2 cut(s) 21, 32
MboII GAAGA 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 2 cut(s) 103, 181
MseI TTAA 1 cut(s) 176
MspI CCGG 1 cut(s) 28
NdeII GATC 2 cut(s) 21, 32
NlaIII CATG 3 cut(s) 64, 237, 258
NlaIV GGNNCC 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 257
NspI RCATGY 1 cut(s) 258
PciI ACATGT 1 cut(s) 254
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 221
PscI ACATGT 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 2 cut(s) 21, 32
SetI ASST 3 cut(s) 14, 47, 251
SfaNI GCATC 1 cut(s) 231
SsiI CCGC 1 cut(s) 219
TaiI ACGT 1 cut(s) 47
TaqI TCGA 2 cut(s) 20, 56
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 164, 190
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspRI CASTG 2 cut(s) 164, 190
XceI RCATGY 1 cut(s) 258
ZraI GACGTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.