Prupe.8G157800_v2.0.a1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014651
Physical Location & Seq
Forward (+)
16794545 .. 16795015
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G157800.1

Sequence Viewer

Length: 285 bp
ATGGGTATTAGTTTGATATCGATCATCCGACGATCTCTCGCGATGTCTAAGCAATTGAGTATGGCTACGACGAATGTCCCGAAGGGCCACTTTGCTGTTTATGTAGGAGAGGAGCAGAAAAAGAGGCTTGTGGTACCAATATCATACTTGAACCACCAGTGGTTCAAAGACTTGCTAAGTTGCAGTGAAGAAAAGTTTGGGTTCACTCATCCAATGGGTGGCATCACAATTCCATGCACTGAAGAGGCCTTCATTGGTCTCAGTTCTTGTTTGCATTCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

95

Amino Acids

10.49

Weight (kDa)

8.54

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 133
AccB7I CCANNNNNTGG 1 cut(s) 218
AccII CGCG 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 2 cut(s) 151, 166
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 2 cut(s) 85, 246
Asp718I GGTACC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 231
BoxI GACNNNNGTC 1 cut(s) 74
Bsa29I ATCGAT 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 20
BseGI GGATG 2 cut(s) 24, 208
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 87, 248
BshNI GGYRCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 20
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 2 cut(s) 87, 248
Bso31I GGTCTC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 21, 32
Bsp68I TCGCGA 1 cut(s) 41
BspANI GGCC 2 cut(s) 87, 248
BspCNI CTCAG 1 cut(s) 273
BspDI ATCGAT 1 cut(s) 20
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 157
BssMI GATC 2 cut(s) 21, 32
Bst6I CTCTTC 1 cut(s) 237
BstDEI CTNAG 3 cut(s) 48, 176, 260
BstF5I GGATG 2 cut(s) 24, 208
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 2 cut(s) 24, 35
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 2 cut(s) 21, 32
BstPAI GACNNNNGTC 1 cut(s) 74
BstUI CGCG 1 cut(s) 41
Bsu15I ATCGAT 1 cut(s) 20
BsuRI GGCC 2 cut(s) 87, 248
BsuTUI ATCGAT 1 cut(s) 20
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 24, 208
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 3 cut(s) 164, 190, 237
BtuMI TCGCGA 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 20
Csp6I GTAC 1 cut(s) 134
CviAII CATG 1 cut(s) 234
CviJI RGCY 4 cut(s) 65, 87, 127, 248
CviKI_1 RGCY 4 cut(s) 65, 87, 127, 248
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 3 cut(s) 48, 176, 260
DpnI GATC 2 cut(s) 23, 34
DpnII GATC 2 cut(s) 21, 32
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 263
Eco32I GATATC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 261
EcoRV GATATC 1 cut(s) 18
FaeI CATG 1 cut(s) 237
FaiI YATR 4 cut(s) 62, 102, 145, 235
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 1 cut(s) 62
FatI CATG 1 cut(s) 233
FokI GGATG 2 cut(s) 11, 195
HaeIII GGCC 2 cut(s) 87, 248
Hin1II CATG 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 40, 79
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 2 cut(s) 33, 73
HpyAV CCTTC 2 cut(s) 76, 259
HpyCH4V TGCA 3 cut(s) 183, 237, 274
HpyF3I CTNAG 3 cut(s) 48, 176, 260
Hsp92II CATG 1 cut(s) 237
KpnI GGTACC 1 cut(s) 137
Kzo9I GATC 2 cut(s) 21, 32
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 1 cut(s) 170
LweI GCATC 1 cut(s) 231
MalI GATC 2 cut(s) 23, 34
MboI GATC 2 cut(s) 21, 32
MboII GAAGA 2 cut(s) 200, 254
MfeI CAATTG 1 cut(s) 53
MluCI AATT 2 cut(s) 53, 228
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 103, 117, 238
MseI TTAA 1 cut(s) 283
MunI CAATTG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 274
MvnI CGCG 1 cut(s) 41
NdeII GATC 2 cut(s) 21, 32
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 1 cut(s) 135
NruI TCGCGA 1 cut(s) 41
PceI AGGCCT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 1 cut(s) 274
PflMI CCANNNNNTGG 1 cut(s) 218
PshAI GACNNNNGTC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 85
RruI TCGCGA 1 cut(s) 41
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 283
Sau3AI GATC 2 cut(s) 21, 32
Sau96I GGNCC 1 cut(s) 85
SfaNI GCATC 1 cut(s) 231
SgeI CNNG 9 cut(s) 50, 52, 91, 140, 160, 169, 184, 246, 279
Sse9I AATT 2 cut(s) 53, 228
SseBI AGGCCT 1 cut(s) 248
StuI AGGCCT 1 cut(s) 248
TaqI TCGA 1 cut(s) 20
TasI AATT 2 cut(s) 53, 228
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TscAI CASTG 3 cut(s) 164, 190, 244
TspDTI ATGAA 1 cut(s) 241
TspRI CASTG 3 cut(s) 164, 190, 244
Van91I CCANNNNNTGG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.