FvH4_2g02320

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014651
Physical Location & Seq
Reverse (-)
1914341 .. 1915026
686 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02320.t1

Sequence Viewer

Length: 387 bp
ATGGGTATCAAATTGTTATCAACCATCCGGCGATCTCTTATGAGGTCTAAGTTTTCAAGTTTGGCTACTACGAATGTCCCAAAGGGCCACTTTGCTGTTTATGTAGGGGAAGAACAGACAAAGAGATTCATAATACCAAAATCATACTTGAACCTACAGTGGTTCAGAGACGTGCTAAGTAATTCAAGTTCGTTTCCAATATCTGTTTCACCTGCAAGAGCTGATCTAGTACTACTTATCCTGGATGTTGAAATTGTTTGGTTCTTCAAAATCATTTTCCATTACGATTTCCAACTTAAGTTCCTAGTGTTCTTAAGGTCAGGTCCTTTTGCAGAGACACCCAAAAAACCAATGTGCAAGAAAAGACTACAATCACCTGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

129

Amino Acids

14.77

Weight (kDa)

10.12

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 63 3.8e-10 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
Acc36I ACCTGC 1 cut(s) 220
AfaI GTAC 1 cut(s) 231
AflII CTTAAG 2 cut(s) 296, 313
AgsI TTSAA 5 cut(s) 57, 151, 186, 251, 268
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 240
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 162, 329
AoxI GGCC 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 85, 323
AsuHPI GGTGA 2 cut(s) 201, 366
AvaII GGWCC 1 cut(s) 323
BccI CCATC 2 cut(s) 32, 374
BciT130I CCWGG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 162, 329
BfaI CTAG 2 cut(s) 227, 305
BfmI CTRYAG 1 cut(s) 155
BfrI CTTAAG 2 cut(s) 296, 313
BfuAI ACCTGC 1 cut(s) 220
BmcAI AGTACT 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 85, 323
BmrFI CCNGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 24, 250
BshFI GGCC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 62
BsmAI GTCTC 2 cut(s) 162, 329
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 32, 223
BspANI GGCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 220
BspTI CTTAAG 2 cut(s) 296, 313
BssMI GATC 2 cut(s) 32, 223
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 159
BstAFI CTTAAG 2 cut(s) 296, 313
BstDEI CTNAG 2 cut(s) 48, 176
BstF5I GGATG 2 cut(s) 24, 250
BstKTI GATC 2 cut(s) 35, 226
BstMAI GTCTC 2 cut(s) 162, 329
BstMBI GATC 2 cut(s) 32, 223
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 87
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 24, 250
BtsIMutI CAGTG 1 cut(s) 164
BveI ACCTGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 85, 323
Csp6I GTAC 1 cut(s) 230
CviJI RGCY 3 cut(s) 65, 87, 221
CviKI_1 RGCY 3 cut(s) 65, 87, 221
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 2 cut(s) 48, 176
DpnI GATC 2 cut(s) 34, 225
DpnII GATC 2 cut(s) 32, 223
Eco47I GGWCC 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 162
FaiI YATR 4 cut(s) 41, 102, 131, 145
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 1 cut(s) 62
FokI GGATG 2 cut(s) 11, 257
FspBI CTAG 2 cut(s) 227, 305
HaeIII GGCC 1 cut(s) 87
HapII CCGG 1 cut(s) 28
HinfI GANTC 1 cut(s) 126
HpaII CCGG 1 cut(s) 28
HphI GGTGA 2 cut(s) 201, 366
Hpy188I TCNGA 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 215, 332, 357
HpyF3I CTNAG 2 cut(s) 48, 176
HpySE526I ACGT 1 cut(s) 171
Kzo9I GATC 2 cut(s) 32, 223
LpnPI CCDG 5 cut(s) 41, 225, 227, 254, 306
MaeI CTAG 2 cut(s) 227, 305
MaeII ACGT 1 cut(s) 171
MalI GATC 2 cut(s) 34, 225
MboI GATC 2 cut(s) 32, 223
MboII GAAGA 2 cut(s) 122, 256
MluCI AATT 3 cut(s) 11, 181, 252
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 1 cut(s) 36
MseI TTAA 3 cut(s) 297, 314, 385
MspCI CTTAAG 2 cut(s) 296, 313
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
NdeII GATC 2 cut(s) 32, 223
PaqCI CACCTGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 240
PpuMI RGGWCCY 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspPI GGNCC 2 cut(s) 85, 323
PspPPI RGGWCCY 1 cut(s) 323
PsrI GAACNNNNNNTAC 2 cut(s) 172, 204
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 297, 314, 385
Sau3AI GATC 2 cut(s) 32, 223
Sau96I GGNCC 2 cut(s) 85, 323
ScaI AGTACT 1 cut(s) 231
ScrFI CCNGG 1 cut(s) 242
SetI ASST 8 cut(s) 47, 156, 174, 214, 223, 320, 325, 379
SfcI CTRYAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 323
SmlI CTYRAG 2 cut(s) 296, 313
SmoI CTYRAG 2 cut(s) 296, 313
Sse9I AATT 3 cut(s) 11, 181, 252
SspMI CTAG 2 cut(s) 227, 305
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 174
TasI AATT 3 cut(s) 11, 181, 252
TatI WGTACW 1 cut(s) 229
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 3 cut(s) 297, 314, 385
Tru9I TTAA 3 cut(s) 297, 314, 385
TscAI CASTG 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 1 cut(s) 164
Vha464I CTTAAG 2 cut(s) 296, 313
VpaK11BI GGWCC 1 cut(s) 323
XspI CTAG 2 cut(s) 227, 305
ZrmI AGTACT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.