FvH4_2g03650

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007574
Physical Location & Seq
Reverse (-)
2946477 .. 2952181
5705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03650.t4

Sequence Viewer

Length: 1581 bp
ATGGCGACACAAAAAGCCGATGACTTTCAGCCACATCCGGTGAAGGAGCAGCTTCCCGGCGTCGACTTCTGCATGACCTCTTCTCCTCCTTGGCCTGAAGCCATAATTCTGGGATTTCAGCACTTTCTGGTTATGTTGGGCACCACTGTGTTCATTCCCATCTTGCTTGTCCCTATAATGGGTGGTGGTGATGTAGAGAAGGCAGAAGTGATTGATACTGTGCTCTTTGTCGCCGGCATTAACACACTGTTACAGACGTGGTTTGGGACTCGTCTTCCTGTGGTGATGGGGGCTTCATATGCTTTCATCGTCCCTGCTCTCTCCATAGCTTATTCCAGGAGGTTCAGTGTATTCATAGACCCCCACCAGAGGTTCAGAGAAACTATGGCAGCAATACAAGGGGCACTCATTATTGCTTCATTCTTTCAAATGATCCTTGGCTTTTTGGGGTTTGTCAGAATTTTTGGGAGGTATCTTAGTCCTCTCTCGTCTGTTCCTCTAGTGACTCTTACTGGACTGGGGTTCTTTGTACTTGGTTTTCCTCTGCTGGCAAATTGTATTGAAGTTGGATTACCGGCCATACTTATACTGCTTCTTCTATCACAGTATGCCTCCACAATGAAGTTAAAGATACCAATATTTGAACGATTTGCGGTACTATTCTCTGTTGCAATTGTATGGGTGTATGCAGAAATTCTGACTGCAGGTGGTGCATATAATCATAAATCCCCTAGAACTCAAACTAGCTGCCGCACTGATCGTTCTGGGCTTGTCCGGGCTGCTCCTTGGGTAAGGGTTCCCTATCCATTCCAATGGGGGCGGCCGTCTTTTAATGCTGGAGATACTTTTGCGATTATGGCTGCTGCTTTTGTATCCATCATTGAGTCCATAGGTGTATTCATTGCAGCATCACGATACGGGAGTGCCACCCCTCCACCACCTTCTGTTCTGAGCCGAGGTATAGGCTGGCAGGGCATAAGCACTCTTCTAAATGGCATCTTTGGCTCATTAACCGGCTCAACTGCATCAGTTGAAAATGCAGGTTTGCTGGGATTGACACGTGTTGGAAGTCGAAGAGTAATTCAAATATCAGCAGGCTTTATGTTTTTCTTCTCCATATTAGGAAAGTTTGGTGCTATCCTTGCATCTATACCACTTCCAATTGTGGCAGCTTTGTATTGTGTTCTCTATGCCTATGTTGCTTCCGCTGGTCTAGGTTTGTTGCAGTTCTGCAACCTTAACAGCTTTAGGTCAAAGTTCATAATTGGTTTTTCTCTCTTCATGGGTCTTTCTGTGCCTCAGTACTTCCATGACTACCTCTTAACTTCTGGTCATGGCCCTCTTCACACACATCAAATCTGGTTCAACAACATTGTGCAAGTAATTTTCTCATCTGCTGCAACTGTAGCAATTATAGTTGCTCTCTTCTGCGACCTCACCATGGGCTGTGGACACAGTTCTACAAGACGGGACAGTGGCCGACACTGGTGGGGAAAGTTCAGAAAATTTGACACTGATACAAGGAGTGAAGAGTTCTACTCGCTTCCATACAACCTTAATAGGCATTTCCCTTCGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

527

Amino Acids

57.62

Weight (kDa)

9.39

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 1 - 392 6.5e-59 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 695
Acc36I ACCTGC 2 cut(s) 695, 1031
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 63
AciI CCGC 4 cut(s) 653, 751, 820, 1206
AclWI GGATC 1 cut(s) 427
AcoI YGGCCR 3 cut(s) 576, 821, 1477
AcsI RAATTY 3 cut(s) 459, 693, 1505
AcuI CTGAAG 1 cut(s) 117
AcvI CACGTG 1 cut(s) 1061
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 3 cut(s) 531, 657, 1304
AfiI CCNNNNNNNGG 4 cut(s) 178, 179, 369, 1441
AflIII ACRYGT 2 cut(s) 1058, 1060
AgsI TTSAA 6 cut(s) 428, 563, 644, 1034, 1085, 1366
AjiI CACGTC 1 cut(s) 258
AjnI CCWGG 1 cut(s) 335
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 5 cut(s) 52, 329, 747, 1172, 1245
AluI AGCT 5 cut(s) 52, 329, 747, 1172, 1245
Alw21I GWGCWC 1 cut(s) 225
AlwI GGATC 1 cut(s) 427
AoxI GGCC 5 cut(s) 92, 576, 821, 1336, 1477
ApeKI GCWGC 9 cut(s) 49, 389, 747, 779, 860, 863, 905, 1169, 1397
ApoI RAATTY 3 cut(s) 459, 693, 1505
AspS9I GGNCC 1 cut(s) 1337
AsuC2I CCSGG 2 cut(s) 57, 776
AsuHPI GGTGA 4 cut(s) 52, 200, 295, 1429
BaeGI GKGCMC 2 cut(s) 143, 406
BaeI ACNNNNGTAYC 2 cut(s) 907, 940
BanI GGYRCC 1 cut(s) 140
BarI GAAGNNNNNNTAC 2 cut(s) 555, 587
BbrPI CACGTG 1 cut(s) 1061
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 9 cut(s) 61, 401, 734, 766, 847, 850, 917, 1181, 1384
BccI CCATC 3 cut(s) 167, 280, 884
BceAI ACGGC 1 cut(s) 808
BciT130I CCWGG 1 cut(s) 337
BciVI GTATCC 1 cut(s) 883
BcnI CCSGG 2 cut(s) 57, 776
BfaI CTAG 4 cut(s) 500, 732, 744, 1214
BfmI CTRYAG 2 cut(s) 702, 1404
BfuAI ACCTGC 2 cut(s) 695, 1031
BfuI GTATCC 1 cut(s) 883
BmcAI AGTACT 1 cut(s) 1304
Bme1390I CCNGG 3 cut(s) 57, 337, 776
BmgBI CACGTC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 1337
BmiI GGNNCC 2 cut(s) 142, 798
BmrFI CCNGG 3 cut(s) 57, 337, 776
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 4 cut(s) 917, 1005, 1034, 1154
BmuI ACTGGG 1 cut(s) 527
BpiI GAAGAC 1 cut(s) 266
BplI GAGNNNNNCTC 2 cut(s) 1523, 1555
BpmI CTGGAG 1 cut(s) 858
BpuMI CCSGG 2 cut(s) 57, 776
BsaAI YACGTR 1 cut(s) 1061
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 5 cut(s) 89, 436, 785, 955, 1440
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 4 cut(s) 67, 97, 331, 361
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 179, 369, 1441
Bse118I RCCGGY 3 cut(s) 233, 574, 1013
Bse1I ACTGG 3 cut(s) 517, 522, 1490
Bse3DI GCAATG 1 cut(s) 900
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 5 cut(s) 89, 436, 785, 955, 1440
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 4 cut(s) 178, 179, 369, 1441
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 2 cut(s) 941, 1313
BseNI ACTGG 3 cut(s) 517, 522, 1490
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 2 cut(s) 143, 406
BseX3I CGGCCG 1 cut(s) 821
BseXI GCAGC 9 cut(s) 61, 401, 734, 766, 847, 850, 917, 1181, 1384
BseYI CCCAGC 1 cut(s) 1048
Bsh1285I CGRYCG 1 cut(s) 824
BshFI GGCC 5 cut(s) 94, 578, 823, 1338, 1479
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 6 cut(s) 38, 57, 234, 575, 775, 1014
BslFI GGGAC 4 cut(s) 155, 280, 296, 1484
BslI CCNNNNNNNGG 4 cut(s) 178, 179, 369, 1441
BsmFI GGGAC 4 cut(s) 155, 280, 296, 1484
BsnI GGCC 5 cut(s) 94, 578, 823, 1338, 1479
Bsp1286I GDGCHC 3 cut(s) 143, 225, 406
Bsp143I GATC 2 cut(s) 432, 757
Bsp19I CCATGG 1 cut(s) 1440
BspACI CCGC 4 cut(s) 653, 751, 820, 1206
BspANI GGCC 5 cut(s) 94, 578, 823, 1338, 1479
BspCNI CTCAG 2 cut(s) 942, 1312
BspLI GGNNCC 2 cut(s) 142, 798
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 2 cut(s) 695, 1031
BspPI GGATC 1 cut(s) 427
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 900
BsrFI RCCGGY 3 cut(s) 233, 574, 1013
BsrI ACTGG 3 cut(s) 517, 522, 1490
BssAI RCCGGY 3 cut(s) 233, 574, 1013
BssECI CCNNGG 5 cut(s) 89, 436, 785, 955, 1440
BssMI GATC 2 cut(s) 432, 757
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 4 cut(s) 89, 436, 785, 1440
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 7 cut(s) 148, 220, 249, 606, 1405, 1457, 1475
Bst6I CTCTTC 7 cut(s) 85, 990, 1069, 1283, 1347, 1430, 1524
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 1061
BstC8I GCNNGC 4 cut(s) 235, 549, 968, 1096
BstDEI CTNAG 3 cut(s) 476, 950, 1299
BstDSI CCRYGG 1 cut(s) 1440
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 2 cut(s) 435, 760
BstMBI GATC 2 cut(s) 432, 757
BstMCI CGRYCG 1 cut(s) 824
BstMWI GCNNNNNNNGC 8 cut(s) 299, 710, 857, 972, 1002, 1142, 1199, 1406
BstNI CCWGG 1 cut(s) 337
BstSCI CCNGG 3 cut(s) 55, 335, 774
BstSFI CTRYAG 2 cut(s) 702, 1404
BstSLI GKGCMC 2 cut(s) 143, 406
BstV1I GCAGC 9 cut(s) 61, 401, 734, 766, 847, 850, 917, 1181, 1384
BstV2I GAAGAC 1 cut(s) 266
BstXI CCANNNNNNTGG 2 cut(s) 109, 813
BstZI CGGCCG 1 cut(s) 821
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 5 cut(s) 94, 578, 823, 1338, 1479
BtgI CCRYGG 1 cut(s) 1440
BtrI CACGTC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 7 cut(s) 144, 245, 352, 753, 1480, 1483, 1512
BveI ACCTGC 2 cut(s) 695, 1031
Cac8I GCNNGC 4 cut(s) 235, 549, 968, 1096
Cfr10I RCCGGY 3 cut(s) 233, 574, 1013
Cfr13I GGNCC 1 cut(s) 1337
CseI GACGC 1 cut(s) 49
Csp6I GTAC 3 cut(s) 530, 656, 1303
CviAII CATG 5 cut(s) 73, 1282, 1310, 1334, 1441
CviQI GTAC 3 cut(s) 530, 656, 1303
DdeI CTNAG 3 cut(s) 476, 950, 1299
DpnI GATC 2 cut(s) 434, 759
DpnII GATC 2 cut(s) 432, 757
EaeI YGGCCR 3 cut(s) 576, 821, 1477
EagI CGGCCG 1 cut(s) 821
Eam1104I CTCTTC 7 cut(s) 85, 990, 1069, 1283, 1347, 1430, 1524
EarI CTCTTC 7 cut(s) 85, 990, 1069, 1283, 1347, 1430, 1524
EclXI CGGCCG 1 cut(s) 821
Eco130I CCWWGG 4 cut(s) 89, 436, 785, 1440
Eco52I CGGCCG 1 cut(s) 821
Eco57I CTGAAG 1 cut(s) 117
Eco72I CACGTG 1 cut(s) 1061
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 4 cut(s) 89, 436, 785, 1440
ErhI CCWWGG 4 cut(s) 89, 436, 785, 1440
FaeI CATG 5 cut(s) 76, 1285, 1313, 1337, 1444
FaqI GGGAC 4 cut(s) 155, 280, 296, 1484
FatI CATG 5 cut(s) 72, 1281, 1309, 1333, 1440
FauNDI CATATG 1 cut(s) 298
FblI GTMKAC 1 cut(s) 63
FokI GGATG 1 cut(s) 21
FspBI CTAG 4 cut(s) 500, 732, 744, 1214
GsaI CCCAGC 1 cut(s) 1052
GsuI CTGGAG 1 cut(s) 858
HaeIII GGCC 5 cut(s) 94, 578, 823, 1338, 1479
HapII CCGG 6 cut(s) 38, 57, 234, 575, 775, 1014
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 5 cut(s) 76, 1285, 1313, 1337, 1444
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 3 cut(s) 268, 505, 884
HpaII CCGG 6 cut(s) 38, 57, 234, 575, 775, 1014
HphI GGTGA 4 cut(s) 52, 200, 295, 1429
Hpy166II GTNNAC 2 cut(s) 64, 1451
Hpy188I TCNGA 5 cut(s) 377, 458, 699, 951, 1502
Hpy188III TCNNGA 1 cut(s) 912
Hpy8I GTNNAC 2 cut(s) 64, 1451
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 4 cut(s) 37, 193, 951, 1581
HpyCH4III ACNGT 7 cut(s) 148, 220, 249, 606, 1405, 1457, 1475
HpyCH4IV ACGT 2 cut(s) 257, 1060
HpyF10VI GCNNNNNNNGC 8 cut(s) 299, 710, 857, 972, 1002, 1142, 1199, 1406
HpyF3I CTNAG 3 cut(s) 476, 950, 1299
HpySE526I ACGT 2 cut(s) 257, 1060
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 5 cut(s) 76, 1285, 1313, 1337, 1444
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Kzo9I GATC 2 cut(s) 432, 757
LmnI GCTCC 2 cut(s) 46, 787
Lsp1109I GCAGC 9 cut(s) 61, 401, 734, 766, 847, 850, 917, 1181, 1384
LweI GCATC 4 cut(s) 917, 1005, 1034, 1154
MaeI CTAG 4 cut(s) 500, 732, 744, 1214
MaeII ACGT 2 cut(s) 257, 1060
MaeIII GTNAC 2 cut(s) 249, 502
MalI GATC 2 cut(s) 434, 759
MboI GATC 2 cut(s) 432, 757
MfeI CAATTG 2 cut(s) 672, 1161
MhlI GDGCHC 3 cut(s) 143, 225, 406
MlyI GAGTC 3 cut(s) 262, 499, 893
MmeI TCCRAC 2 cut(s) 547, 1045
MroNI GCCGGC 1 cut(s) 233
MseI TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
MslI CAYNNNNRTG 2 cut(s) 146, 811
MspA1I CMGCKG 1 cut(s) 1208
MspI CCGG 6 cut(s) 38, 57, 234, 575, 775, 1014
MspR9I CCNGG 3 cut(s) 57, 337, 776
MunI CAATTG 2 cut(s) 672, 1161
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 8 cut(s) 299, 710, 857, 972, 1002, 1142, 1199, 1406
NaeI GCCGGC 1 cut(s) 235
NciI CCSGG 2 cut(s) 57, 776
NcoI CCATGG 1 cut(s) 1440
NdeI CATATG 1 cut(s) 298
NdeII GATC 2 cut(s) 432, 757
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 5 cut(s) 76, 1285, 1313, 1337, 1444
NlaIV GGNNCC 2 cut(s) 142, 798
NmeAIII GCCGAG 1 cut(s) 980
NmuCI GTSAC 1 cut(s) 502
OliI CACNNNNGTG 1 cut(s) 146
PaqCI CACCTGC 1 cut(s) 695
PdiI GCCGGC 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 335
PleI GAGTC 3 cut(s) 262, 499, 892
PmaCI CACGTG 1 cut(s) 1061
PmlI CACGTG 1 cut(s) 1061
PpsI GAGTC 3 cut(s) 262, 499, 892
Ppu21I YACGTR 1 cut(s) 1061
Psp6I CCWGG 1 cut(s) 335
PspCI CACGTG 1 cut(s) 1061
PspFI CCCAGC 1 cut(s) 1048
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 2 cut(s) 142, 798
PspPI GGNCC 1 cut(s) 1337
PstI CTGCAG 1 cut(s) 706
RsaI GTAC 3 cut(s) 531, 657, 1304
RsaNI GTAC 3 cut(s) 530, 656, 1303
RseI CAYNNNNRTG 2 cut(s) 146, 811
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
Sau3AI GATC 2 cut(s) 432, 757
Sau96I GGNCC 1 cut(s) 1337
ScaI AGTACT 1 cut(s) 1304
SchI GAGTC 3 cut(s) 262, 499, 893
ScrFI CCNGG 3 cut(s) 57, 337, 776
SduI GDGCHC 3 cut(s) 143, 225, 406
SfaNI GCATC 4 cut(s) 917, 1005, 1034, 1154
SfcI CTRYAG 2 cut(s) 702, 1404
SmiMI CAYNNNNRTG 2 cut(s) 146, 811
SsiI CCGC 4 cut(s) 653, 751, 820, 1206
SspI AATATT 1 cut(s) 639
SspMI CTAG 4 cut(s) 500, 732, 744, 1214
StyD4I CCNGG 3 cut(s) 55, 335, 774
StyI CCWWGG 4 cut(s) 89, 436, 785, 1440
TaaI ACNGT 7 cut(s) 148, 220, 249, 606, 1405, 1457, 1475
TaiI ACGT 2 cut(s) 260, 1063
TaqI TCGA 2 cut(s) 63, 1072
TatI WGTACW 2 cut(s) 529, 1302
TauI GCSGC 2 cut(s) 753, 823
Tru1I TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
Tru9I TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
TscAI CASTG 7 cut(s) 151, 252, 352, 760, 1480, 1490, 1519
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 9 cut(s) 49, 389, 747, 779, 860, 863, 905, 1169, 1397
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 9 cut(s) 142, 285, 295, 343, 408, 635, 889, 1249, 1270
TspRI CASTG 7 cut(s) 151, 252, 352, 760, 1480, 1490, 1519
XapI RAATTY 3 cut(s) 459, 693, 1505
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 4 cut(s) 500, 732, 744, 1214
ZrmI AGTACT 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.