RLG00000015078

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007574
Physical Location & Seq
Forward (+)
61425438 .. 61430430
4993 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015078

Sequence Viewer

Length: 1581 bp
ATGGCGGCACAAAAAGCCGATGACTTCCAGCCACATCCGGTGAAGGAGCAGCTTCCCGGCGTCGACTTCTGCATGACCTCCTCTCCTCCTTGGCCTGAAGCCATAATTCTGGGATTTCAGCACTTTCTTGTTATGTTGGGCACCACTGTGTTCATCCCCACCGTGCTTGTCCCTATAATGGGTGGTGGTGATGTAGAGAAGGCAGAAGTGATTGATACTGTGCTCTTTGTCGCTGGCATTAATACACTGTTACAGACTTGGTTTGGGACTCGTATCCCTGTGGTGATGGGGGCTTCATACGCTTTCATCATCCCTGCTCTCTCCATTGCTTATTCCAGGAGGTTCAGTGCATTCATAGAACCCCACCAGAGGTTCAGAGAAACTATGAAAGCAATACAAGGAGCACTCATAATTGCATCATTCTTGCAAATGATCCTTGGCTTTTTGGGATTTGTGAGAATTTTTGGGAGGTATCTTAGTCCTCTCTCTTCTGTTCCTCTAGTGACTCTTACTGGACTGGGGTTCTTTGTACTTGGTTTTCCTTTGTTGGCAAATTGTGTTGAAGTTGGATTACCAGCCTTAGTTATATTGCTTCTTCTATCACAGTATGCCTCCACAATGAAGTTAAAGATACCAATATTTGATCGATTTGCGGTACTATTCACTGTTGCAATAGTATGGGTGTATGCAGTAATTTTGACTGCAGCTGGTGCTTATGATCATAGATCCCCTAGAACTCAAACTAGCTGCCGCACTGATCGTTCTGGGCTTGTCAGGGCTGCTCCTTGGGTAAGGGTTCCCTATCCATTCCAATGGGGGCGGCCGGATTTTAATGCTGGATATACTCTTGCAATTATGGCTGCTGCTTTTGTTGCCATAATTGAGTCCATAGGTGTATTCATTGCTGCATCAAGATATGGGAGTGCCACCCCTCCACCACCTTCTGTTCTGAGCCGAGGTATAGGCTGGCAGGGCATAAGCACTCTTCTGAATGGTATCTTTGGCTCATTAACTGGCTCAACTGCATCAGTTGAAAATGCAGGTTTGTTGGGATTGACACGTGTTGGAAGTCGAAGAGTGATTCAAATATCAGCAGGCTTTATGTTTTTCTTCTCTGTATTAGGAAAGTTTGGGGCTATTCTTGCATCTATACCACTTCCAATTGTGGCAGCTCTGTATTGTGTTCTCTATGCCTATGTTGTTTCTGCTGGTCTTGGTTTATTGCAGTTCTGCAACCTTAACAGCTTTAGGTCAAAGTTCATCATTGGTTTTTCTCTCTTCATGGGTCTTTCTGTGCCTCAGTACTTTCATGACTACATCTTAACTTCTGGTCATGGCCCTCTTCACACACATCAAATCTGGTTCAACAACATTGTGCAAGTAATTTTCTCTTCTGCTGCAACTGTAGCAATCATAGTTGCTCTCTTCTTTGACCTCACCATTGGCCGTGGACACAGTTCTACTAGGCGGGACAGTGGCCGACACTGGTGGGGAAAGTTCAGAAAATTTGACACAGATACCAGGAGCGAAGAGTTCTACTCACTTCCATACAACCTTAATAGGCATTTCCCTTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

527

Amino Acids

57.69

Weight (kDa)

9.63

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 33 - 436 1.8e-65 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1031
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 63
AciI CCGC 5 cut(s) 5, 653, 751, 820, 1468
AclWI GGATC 2 cut(s) 427, 720
AcoI YGGCCR 3 cut(s) 821, 1444, 1477
AcsI RAATTY 2 cut(s) 459, 1505
AcuI CTGAAG 2 cut(s) 117, 1557
AcvI CACGTG 1 cut(s) 1061
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 3 cut(s) 531, 657, 1304
AfiI CCNNNNNNNGG 3 cut(s) 178, 179, 369
AflIII ACRYGT 2 cut(s) 1058, 1060
AgsI TTSAA 4 cut(s) 563, 1034, 1085, 1366
AjnI CCWGG 2 cut(s) 335, 1520
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 5 cut(s) 52, 707, 747, 1172, 1245
AluI AGCT 5 cut(s) 52, 707, 747, 1172, 1245
Alw21I GWGCWC 2 cut(s) 225, 406
AlwI GGATC 2 cut(s) 427, 720
AoxI GGCC 5 cut(s) 92, 821, 1336, 1444, 1477
ApeKI GCWGC 9 cut(s) 49, 704, 747, 779, 860, 863, 905, 1169, 1397
ApoI RAATTY 2 cut(s) 459, 1505
AseI ATTAAT 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 1337
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 4 cut(s) 52, 200, 295, 1429
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 140
BarI GAAGNNNNNNTAC 2 cut(s) 555, 587
BbrPI CACGTG 1 cut(s) 1061
Bbv12I GWGCWC 2 cut(s) 225, 406
BbvI GCAGC 9 cut(s) 61, 716, 734, 766, 847, 850, 892, 1181, 1384
BccI CCATC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 1431
BciT130I CCWGG 2 cut(s) 337, 1522
BciVI GTATCC 1 cut(s) 284
BclI TGATCA 1 cut(s) 718
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 4 cut(s) 500, 732, 744, 1464
BfmI CTRYAG 2 cut(s) 702, 1404
BfuAI ACCTGC 1 cut(s) 1031
BfuI GTATCC 1 cut(s) 284
BmcAI AGTACT 1 cut(s) 1304
Bme1390I CCNGG 3 cut(s) 57, 337, 1522
BmgT120I GGNCC 1 cut(s) 1337
BmiI GGNNCC 2 cut(s) 142, 798
BmrFI CCNGG 3 cut(s) 57, 337, 1522
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 4 cut(s) 425, 917, 1034, 1154
BmuI ACTGGG 1 cut(s) 527
BplI GAGNNNNNCTC 2 cut(s) 1523, 1555
BpuMI CCSGG 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 646
BsaAI YACGTR 1 cut(s) 1061
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 5 cut(s) 89, 436, 785, 955, 1447
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 4 cut(s) 67, 97, 331, 361
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 179, 369
Bse1I ACTGG 4 cut(s) 517, 522, 1018, 1490
Bse3DI GCAATG 2 cut(s) 324, 900
BseBI CCWGG 2 cut(s) 337, 1522
BseCI ATCGAT 1 cut(s) 646
BseDI CCNNGG 5 cut(s) 89, 436, 785, 955, 1447
BseGI GGATG 3 cut(s) 34, 153, 309
BseLI CCNNNNNNNGG 3 cut(s) 178, 179, 369
BseMI GCAATG 2 cut(s) 324, 900
BseMII CTCAG 2 cut(s) 941, 1313
BseNI ACTGG 4 cut(s) 517, 522, 1018, 1490
BseRI GAGGAG 2 cut(s) 70, 75
BseSI GKGCMC 1 cut(s) 143
BseX3I CGGCCG 1 cut(s) 821
BseXI GCAGC 9 cut(s) 61, 716, 734, 766, 847, 850, 892, 1181, 1384
Bsh1285I CGRYCG 1 cut(s) 824
BshFI GGCC 5 cut(s) 94, 823, 1338, 1446, 1479
BshNI GGYRCC 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 646
BsiEI CGRYCG 1 cut(s) 824
BsiHKAI GWGCWC 2 cut(s) 225, 406
BsiSI CCGG 3 cut(s) 38, 57, 824
BslFI GGGAC 3 cut(s) 155, 280, 1484
BslI CCNNNNNNNGG 3 cut(s) 178, 179, 369
BsmFI GGGAC 3 cut(s) 155, 280, 1484
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 5 cut(s) 94, 823, 1338, 1446, 1479
Bsp1286I GDGCHC 3 cut(s) 143, 225, 406
Bsp143I GATC 5 cut(s) 432, 643, 718, 725, 757
BspACI CCGC 5 cut(s) 5, 653, 751, 820, 1468
BspANI GGCC 5 cut(s) 94, 823, 1338, 1446, 1479
BspCNI CTCAG 2 cut(s) 942, 1312
BspDI ATCGAT 1 cut(s) 646
BspHI TCATGA 1 cut(s) 1309
BspLI GGNNCC 2 cut(s) 142, 798
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 1031
BspPI GGATC 2 cut(s) 427, 720
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 2 cut(s) 324, 900
BsrI ACTGG 4 cut(s) 517, 522, 1018, 1490
BssECI CCNNGG 5 cut(s) 89, 436, 785, 955, 1447
BssMI GATC 5 cut(s) 432, 643, 718, 725, 757
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 3 cut(s) 89, 436, 785
Bst2UI CCWGG 2 cut(s) 337, 1522
Bst4CI ACNGT 9 cut(s) 148, 163, 220, 249, 606, 667, 1405, 1457, 1475
Bst6I CTCTTC 8 cut(s) 493, 990, 1069, 1283, 1347, 1396, 1430, 1524
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 1061
BstC8I GCNNGC 3 cut(s) 235, 968, 1096
BstDEI CTNAG 4 cut(s) 476, 580, 950, 1299
BstDSI CCRYGG 1 cut(s) 1447
BstF5I GGATG 3 cut(s) 34, 153, 309
BstKTI GATC 5 cut(s) 435, 646, 721, 728, 760
BstMBI GATC 5 cut(s) 432, 643, 718, 725, 757
BstMCI CGRYCG 1 cut(s) 824
BstMWI GCNNNNNNNGC 8 cut(s) 14, 299, 710, 857, 872, 972, 1142, 1406
BstNI CCWGG 2 cut(s) 337, 1522
BstSCI CCNGG 3 cut(s) 55, 335, 1520
BstSFI CTRYAG 2 cut(s) 702, 1404
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 9 cut(s) 61, 716, 734, 766, 847, 850, 892, 1181, 1384
BstX2I RGATCY 1 cut(s) 725
BstXI CCANNNNNNTGG 2 cut(s) 109, 813
BstYI RGATCY 1 cut(s) 725
BstZI CGGCCG 1 cut(s) 821
Bsu15I ATCGAT 1 cut(s) 646
BsuI GTATCC 1 cut(s) 284
BsuRI GGCC 5 cut(s) 94, 823, 1338, 1446, 1479
BsuTUI ATCGAT 1 cut(s) 646
BtgI CCRYGG 1 cut(s) 1447
BtsCI GGATG 3 cut(s) 34, 153, 309
BtsIMutI CAGTG 7 cut(s) 144, 245, 352, 663, 753, 1480, 1483
BveI ACCTGC 1 cut(s) 1031
Cac8I GCNNGC 3 cut(s) 235, 968, 1096
CciI TCATGA 1 cut(s) 1309
Cfr13I GGNCC 1 cut(s) 1337
ClaI ATCGAT 1 cut(s) 646
CseI GACGC 1 cut(s) 49
Csp6I GTAC 3 cut(s) 530, 656, 1303
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 4 cut(s) 73, 1282, 1310, 1334
CviQI GTAC 3 cut(s) 530, 656, 1303
DdeI CTNAG 4 cut(s) 476, 580, 950, 1299
DpnI GATC 5 cut(s) 434, 645, 720, 727, 759
DpnII GATC 5 cut(s) 432, 643, 718, 725, 757
EaeI YGGCCR 3 cut(s) 821, 1444, 1477
EagI CGGCCG 1 cut(s) 821
Eam1104I CTCTTC 8 cut(s) 493, 990, 1069, 1283, 1347, 1396, 1430, 1524
EarI CTCTTC 8 cut(s) 493, 990, 1069, 1283, 1347, 1396, 1430, 1524
EclXI CGGCCG 1 cut(s) 821
Eco130I CCWWGG 3 cut(s) 89, 436, 785
Eco52I CGGCCG 1 cut(s) 821
Eco57I CTGAAG 2 cut(s) 117, 1557
Eco72I CACGTG 1 cut(s) 1061
EcoRII CCWGG 2 cut(s) 335, 1520
EcoT14I CCWWGG 3 cut(s) 89, 436, 785
ErhI CCWWGG 3 cut(s) 89, 436, 785
FaeI CATG 4 cut(s) 76, 1285, 1313, 1337
FaqI GGGAC 3 cut(s) 155, 280, 1484
FatI CATG 4 cut(s) 72, 1281, 1309, 1333
FauI CCCGC 1 cut(s) 1461
FbaI TGATCA 1 cut(s) 718
FblI GTMKAC 1 cut(s) 63
FokI GGATG 3 cut(s) 21, 140, 296
FspBI CTAG 4 cut(s) 500, 732, 744, 1464
HaeIII GGCC 5 cut(s) 94, 823, 1338, 1446, 1479
HapII CCGG 3 cut(s) 38, 57, 824
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 4 cut(s) 76, 1285, 1313, 1337
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 4 cut(s) 268, 505, 884, 1081
HpaII CCGG 3 cut(s) 38, 57, 824
HphI GGTGA 4 cut(s) 52, 200, 295, 1429
Hpy166II GTNNAC 2 cut(s) 64, 1451
Hpy188I TCNGA 5 cut(s) 377, 951, 990, 1502, 1580
Hpy188III TCNNGA 2 cut(s) 912, 1310
Hpy8I GTNNAC 2 cut(s) 64, 1451
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 4 cut(s) 37, 193, 951, 1581
HpyCH4III ACNGT 9 cut(s) 148, 163, 220, 249, 606, 667, 1405, 1457, 1475
HpyCH4IV ACGT 1 cut(s) 1060
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 299, 710, 857, 872, 972, 1142, 1406
HpyF3I CTNAG 4 cut(s) 476, 580, 950, 1299
HpySE526I ACGT 1 cut(s) 1060
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 4 cut(s) 76, 1285, 1313, 1337
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 5 cut(s) 432, 643, 718, 725, 757
LmnI GCTCC 4 cut(s) 46, 401, 787, 1524
Lsp1109I GCAGC 9 cut(s) 61, 716, 734, 766, 847, 850, 892, 1181, 1384
LweI GCATC 4 cut(s) 425, 917, 1034, 1154
MaeI CTAG 4 cut(s) 500, 732, 744, 1464
MaeII ACGT 1 cut(s) 1060
MaeIII GTNAC 2 cut(s) 249, 502
MalI GATC 5 cut(s) 434, 645, 720, 727, 759
MboI GATC 5 cut(s) 432, 643, 718, 725, 757
MfeI CAATTG 1 cut(s) 1161
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 3 cut(s) 143, 225, 406
MlyI GAGTC 3 cut(s) 262, 499, 893
MmeI TCCRAC 2 cut(s) 547, 1045
MseI TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
MslI CAYNNNNRTG 2 cut(s) 146, 811
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 3 cut(s) 38, 57, 824
MspR9I CCNGG 3 cut(s) 57, 337, 1522
MunI CAATTG 1 cut(s) 1161
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 2 cut(s) 337, 1522
MwoI GCNNNNNNNGC 8 cut(s) 14, 299, 710, 857, 872, 972, 1142, 1406
NciI CCSGG 1 cut(s) 57
NdeII GATC 5 cut(s) 432, 643, 718, 725, 757
NlaIII CATG 4 cut(s) 76, 1285, 1313, 1337
NlaIV GGNNCC 2 cut(s) 142, 798
NmeAIII GCCGAG 1 cut(s) 980
NmuCI GTSAC 1 cut(s) 502
OliI CACNNNNGTG 1 cut(s) 146
PagI TCATGA 1 cut(s) 1309
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 1081
PfoI TCCNGGA 1 cut(s) 335
PleI GAGTC 3 cut(s) 262, 499, 892
PmaCI CACGTG 1 cut(s) 1061
PmlI CACGTG 1 cut(s) 1061
PpsI GAGTC 3 cut(s) 262, 499, 892
Ppu21I YACGTR 1 cut(s) 1061
PshBI ATTAAT 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 335, 1520
PspCI CACGTG 1 cut(s) 1061
PspGI CCWGG 2 cut(s) 335, 1520
PspN4I GGNNCC 2 cut(s) 142, 798
PspPI GGNCC 1 cut(s) 1337
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 1 cut(s) 725
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 3 cut(s) 531, 657, 1304
RsaNI GTAC 3 cut(s) 530, 656, 1303
RseI CAYNNNNRTG 2 cut(s) 146, 811
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
Sau3AI GATC 5 cut(s) 432, 643, 718, 725, 757
Sau96I GGNCC 1 cut(s) 1337
ScaI AGTACT 1 cut(s) 1304
SchI GAGTC 3 cut(s) 262, 499, 893
ScrFI CCNGG 3 cut(s) 57, 337, 1522
SduI GDGCHC 3 cut(s) 143, 225, 406
SfaNI GCATC 4 cut(s) 425, 917, 1034, 1154
SfcI CTRYAG 2 cut(s) 702, 1404
SmiMI CAYNNNNRTG 2 cut(s) 146, 811
SsiI CCGC 5 cut(s) 5, 653, 751, 820, 1468
SspI AATATT 1 cut(s) 639
SspMI CTAG 4 cut(s) 500, 732, 744, 1464
StyD4I CCNGG 3 cut(s) 55, 335, 1520
StyI CCWWGG 3 cut(s) 89, 436, 785
TaaI ACNGT 9 cut(s) 148, 163, 220, 249, 606, 667, 1405, 1457, 1475
TaiI ACGT 1 cut(s) 1063
TaqI TCGA 3 cut(s) 63, 646, 1072
TatI WGTACW 2 cut(s) 529, 1302
TauI GCSGC 3 cut(s) 8, 753, 823
TfiI GAWTC 1 cut(s) 1081
Tru1I TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
Tru9I TTAA 7 cut(s) 240, 626, 831, 1010, 1239, 1322, 1557
TscAI CASTG 7 cut(s) 151, 252, 352, 670, 760, 1480, 1490
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 9 cut(s) 49, 704, 747, 779, 860, 863, 905, 1169, 1397
Tsp45I GTSAC 1 cut(s) 502
TspRI CASTG 7 cut(s) 151, 252, 352, 670, 760, 1480, 1490
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 2 cut(s) 459, 1505
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 4 cut(s) 500, 732, 744, 1464
ZrmI AGTACT 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.